• 제목/요약/키워드: Sequence Search

검색결과 656건 처리시간 0.028초

Subband PRI 분석 알고리즘 (Subband PRI analysis algorithm)

  • 윤원식
    • 한국통신학회논문지
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    • 제21권6호
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    • pp.1425-1429
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    • 1996
  • 누락펄스가 발생할 시 PRI 분석을 위한 전형적인 sequence search 알고리즘은 harmonic 문제를 발생시킨다. 본 논문에서 이러한 harmonic 문제를 해결할 수 있는 PRI 분석 알고리즘을 제안한다. 분석해야 할 전체 PRI 범위를 harmonic이 없도록 subband 로 나눈 후, sequence search를 forward 및 backward로 행한다. 전형적인 sequence search 알고리즘에 비하여 제안한 알고리즘의 성능이 증대된다.

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Protein Sequence Search based on N-gram Indexing

  • Hwang, Mi-Nyeong;Kim, Jin-Suk
    • Bioinformatics and Biosystems
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    • 제1권1호
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    • pp.46-50
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    • 2006
  • According to the advancement of experimental techniques in molecular biology, genomic and protein sequence databases are increasing in size exponentially, and mean sequence lengths are also increasing. Because the sizes of these databases become larger, it is difficult to search similar sequences in biological databases with significant homologies to a query sequence. In this paper, we present the N-gram indexing method to retrieve similar sequences fast, precisely and comparably. This method regards a protein sequence as a text written in language of 20 amino acid codes, adapts N-gram tokens of fixed-length as its indexing scheme for sequence strings. After such tokens are indexed for all the sequences in the database, sequences can be searched with information retrieval algorithms. Using this new method, we have developed a protein sequence search system named as ProSeS (PROtein Sequence Search). ProSeS is a protein sequence analysis system which provides overall analysis results such as similar sequences with significant homologies, predicted subcellular locations of the query sequence, and major keywords extracted from annotations of similar sequences. We show experimentally that the N-gram indexing approach saves the retrieval time significantly, and that it is as accurate as current popular search tool BLAST.

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Partial Transmit Sequence Optimization Using Improved Harmony Search Algorithm for PAPR Reduction in OFDM

  • Singh, Mangal;Patra, Sarat Kumar
    • ETRI Journal
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    • 제39권6호
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    • pp.782-793
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    • 2017
  • This paper considers the use of the Partial Transmit Sequence (PTS) technique to reduce the Peak-to-Average Power Ratio (PAPR) of an Orthogonal Frequency Division Multiplexing signal in wireless communication systems. Search complexity is very high in the traditional PTS scheme because it involves an extensive random search over all combinations of allowed phase vectors, and it increases exponentially with the number of phase vectors. In this paper, a suboptimal metaheuristic algorithm for phase optimization based on an improved harmony search (IHS) is applied to explore the optimal combination of phase vectors that provides improved performance compared with existing evolutionary algorithms such as the harmony search algorithm and firefly algorithm. IHS enhances the accuracy and convergence rate of the conventional algorithms with very few parameters to adjust. Simulation results show that an improved harmony search-based PTS algorithm can achieve a significant reduction in PAPR using a simple network structure compared with conventional algorithms.

작업 투입시점과 순서 의존적인 작업준비시간이 존재하는 단일 기계 일정계획 수립을 위한 Tabu Search (A Tabu Search Algorithm for Single Machine Scheduling Problem with Job Release Times and Sequence - dependent Setup Times)

  • 신현준;김성식;고경석
    • 대한산업공학회지
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    • 제27권2호
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    • pp.158-168
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    • 2001
  • We present a tabu search (TS) algorithm to minimize maximum lateness on a single machine in the presence of sequence dependent setup times and dynamic job arrivals. The TS algorithm starts with a feasible schedule generated by a modified ATCS (Apparent Tardiness Cost with Setups) rule, then through a series of search steps it improves the initial schedule. Results of extensive computational experiments show that the TS algorithm significantly outperforms a well-known RHP heuristic by Ovacik and Uzsoy, both on the solutions quality and the computation time. The performance advantage is particularly pronounced when there is high competition among jobs for machine capacity.

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Fractal Depth Map Sequence Coding Algorithm with Motion-vector-field-based Motion Estimation

  • Zhu, Shiping;Zhao, Dongyu
    • KSII Transactions on Internet and Information Systems (TIIS)
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    • 제9권1호
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    • pp.242-259
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    • 2015
  • Three-dimensional video coding is one of the main challenges restricting the widespread applications of 3D video and free viewpoint video. In this paper, a novel fractal coding algorithm with motion-vector-field-based motion estimation for depth map sequence is proposed. We firstly add pre-search restriction to rule the improper domain blocks out of the matching search process so that the number of blocks involved in the search process can be restricted to a smaller size. Some improvements for motion estimation including initial search point prediction, threshold transition condition and early termination condition are made based on the feature of fractal coding. The motion-vector-field-based adaptive hexagon search algorithm on the basis of center-biased distribution characteristics of depth motion vector is proposed to accelerate the search. Experimental results show that the proposed algorithm can reach optimum levels of quality and save the coding time. The PSNR of synthesized view is increased by 0.56 dB with 36.97% bit rate decrease on average compared with H.264 Full Search. And the depth encoding time is saved by up to 66.47%. Moreover, the proposed fractal depth map sequence codec outperforms the recent alternative codecs by improving the H.264/AVC, especially in much bitrate saving and encoding time reduction.

Input-feeding RNN Search 모델과 CopyNet을 이용한 한국어 의미역 결정 (Korean Semantic Role Labeling using Input-feeding RNN Search Model with CopyNet)

  • 배장성;이창기
    • 한국어정보학회:학술대회논문집
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    • 한국어정보학회 2016년도 제28회 한글및한국어정보처리학술대회
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    • pp.300-304
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    • 2016
  • 본 논문에서는 한국어 의미역 결정을 순차열 분류 문제(Sequence Labeling Problem)가 아닌 순차열 변환 문제(Sequence-to-Sequence Learning)로 접근하였고, 구문 분석 단계와 자질 설계가 필요 없는 End-to-end 방식으로 연구를 진행하였다. 음절 단위의 RNN Search 모델을 사용하여 음절 단위로 입력된 문장을 의미역이 달린 어절들로 변환하였다. 또한 순차열 변환 문제의 성능을 높이기 위해 연구된 인풋-피딩(Input-feeding) 기술과 카피넷(CopyNet) 기술을 한국어 의미역 결정에 적용하였다. 실험 결과, Korean PropBank 데이터에서 79.42%의 레이블 단위 f1-score, 71.58%의 어절 단위 f1-score를 보였다.

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보강된 복합재 패널의 최적설계를 위한 유전알고리듬의 연구 (Advanced Genetic Algrorithm Strategies in Optimal Design of Stiffened Composite Panels)

  • 이종수
    • 대한기계학회논문집A
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    • 제24권5호
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    • pp.1193-1202
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    • 2000
  • The paper describes the use of genetic algorithms (GA's) to the minimum weight design of stiffened composite panels for buckling constraints. The proposed design problem is characterized by mixture of continuous and discrete design variables corresponding to panel elements and stacking sequence of laminates, respectively. Design space is multimodal and non-convex, thereby introducing the need for global search strategies. Advanced strategies in GA's such as directed crossover, multistage search and separated crossover are adopted to improve search ability and to save computational resource requirements. The paper explores the effectiveness of genetic algorithms and their advanced strategies in designing stiffened composite panels under various uniaxial compressive load conditions and the linrlit on stacking sequence of laminates.

시퀀스 데이터베이스를 위한 타임 워핑 기반 유사 검색 (A Method for Time Warping Based Similarity Search in Sequence Databases)

  • 김상욱;박상현
    • 산업기술연구
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    • 제20권B호
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    • pp.219-226
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    • 2000
  • In this paper, we propose a new novel method for similarity search that supports time warping. Our primary goal is to innovate on search performance in large databases without false dismissal. To attain this goal, we devise a new distance function $D_{tw-lb}$ that consistently underestimates the time warping distance and also satisfies the triangular inequality. $D_{tw-lb}$ uses a 4-tuple feature vector extracted from each sequence and is invariant to time warping. For efficient processing, we employ a multidimensional index that uses the 4-tuple feature vector as indexing attributes and $D_{tw-lb}$ as a distance function. We prove that our method does not incur false dismissal. To verify the superiority of our method, we perform extensive experiments. The results reveal that our method achieves significant speedup up to 43 times with real-world S&P 500 stock data.

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Input-feeding RNN Search 모델과 CopyNet을 이용한 한국어 의미역 결정 (Korean Semantic Role Labeling using Input-feeding RNN Search Model with CopyNet)

  • 배장성;이창기
    • 한국정보과학회 언어공학연구회:학술대회논문집(한글 및 한국어 정보처리)
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    • 한국정보과학회언어공학연구회 2016년도 제28회 한글 및 한국어 정보처리 학술대회
    • /
    • pp.300-304
    • /
    • 2016
  • 본 논문에서는 한국어 의미역 결정을 순차열 분류 문제(Sequence Labeling Problem)가 아닌 순차열 변환 문제(Sequence-to-Sequence Learning)로 접근하였고, 구문 분석 단계와 자질 설계가 필요 없는 End-to-end 방식으로 연구를 진행하였다. 음절 단위의 RNN Search 모델을 사용하여 음절 단위로 입력된 문장을 의미역이 달린 어절들로 변환하였다. 또한 순차열 변환 문제의 성능을 높이기 위해 연구된 인풋-피딩(Input-feeding) 기술과 카피넷(CopyNet) 기술을 한국어 의미역 결정에 적용하였다. 실험 결과, Korean PropBank 데이터에서 79.42%의 레이블 단위 f1-score, 71.58%의 어절 단위 f1-score를 보였다.

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준비시간이 있는 혼합모델 조립라인의 제품투입순서 결정 : Tabu Search 기법 적용 (Sequencing in Mixed Model Assembly Lines with Setup Time : A Tabu Search Approach)

  • 김여근;현철주
    • 경영과학
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    • 제13권1호
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    • pp.13-27
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    • 1996
  • This paper considers the sequencing problem in mixed model assembly lines with hybrid workstation types and sequence-dependent setup times. Computation time is often a critical factor in choosing a method of determining the sequence. We develop a mathematical formulation of the problem to minimize the overall length of a line, and present a tabu search technique which can provide a near optimal solution in real time. The proposed technique is compared with a genetic algorithm and a branch-and-bound method. Experimental results are reported to demonstrate the efficiency of the technique.

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