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DNA Chip Database for the Korean Functional Genomics Project

  • Kim, Sang-Soo
    • Proceedings of the Korean Society for Bioinformatics Conference
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    • 2001.10a
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    • pp.11-28
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    • 2001
  • The Korean functional Genomics Project focuses on stomach and liver cancers. Specimens collected by six hospital teams are used in BNA microarray experiments. Experimental conditions, spot measurement data, and the associated clinical information are stored in a relational database. Microarray database schema was developed based on EBI's ArrayExpress. A diagrammatic representation of the schema is used to help navigate over marty tables in the database. Field description, table-to-table relationship, and other database features are also stored in the database and these are used by a PERL interface program to generate web-based input forms on the fly. As such, it is rather simple to modify the database definition and implement controlled vocabularies. This PERL program is a general-purpose utility which can be used for inputting and updating data in relational databases. It supports file upload and user-supplied filters of uploaded data. Joining related tables is implemented using JavaScripts, allowing this step to be deferred to a later stage. This feature alleviates the pain of inputting data into a multi-table database and promotes collaborative data input among several teams. Pathological finding, clinical laboratory parameters, demographical information, and environmental factors are also collected and stored in a separate database. The same PERL program facilitated developing this database and its user-interface.

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Application of Group Master Cache for the Integrated Environment of SAN and NAS (Group Master Cache를 활용한 SAN과 NAS의 통합 방안)

  • Lee, Won-Bok;Park, Jin-Won
    • Journal of the Korea Society for Simulation
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    • v.16 no.2
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    • pp.9-15
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    • 2007
  • As the Internet grows and the mass multimedia data become popular, the storage system migrates from DAS, where the storage and the server are directly connected, to SAN and NAS. SAN connects the storages with a separate network, and NAS provides only file services, connects the storages with IP network. However, SAN and NAS can not fulfill the needs for companies if used separately, thus are asked to be integrated. In this research, we propose an efficient data sharing method which employees the concept of GMC, Croup Master Cache for the integrated environment of SAN and NAS. GMC is based on MCI, Metadata server and Cluster system Integration, but tries to solve the high expansion cost problem with MCI. We introduce the basic concept of GMC, compare the performance of GMC with that of MCI using computer simulation.

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Data Security Technology for the Desktop Virtualization Environment using the Graphic Offloading (SW 분할 실행을 이용한 데스크탑 가상화 환경에서 데이터 보안 기술)

  • Chung, Moonyoung;Choi, Won-Hyuk;Jang, Su-Min;Yang, Kyung-Ah;Kim, Won-Young;Choi, Jihoon
    • KIISE Transactions on Computing Practices
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    • v.20 no.10
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    • pp.555-560
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    • 2014
  • This paper proposes the data security technology for the desktop virtualization environment using the separated software execution method. In the virtual environment where allocates separate VMs to the users, there is a benefit that the programs in one guest machine are isolated from the programs running in another guest machine, whereas in the separated execution environment that supports application virtualization, the isolation is not offered and it causes the data security problem because the applications are executed by the one root privilege in the server. To solve this problem, we provides the data security method using the server storage filter, the viewer filter, and the file mapping table in this paper.

A Vertex-Detecting of Hanguel Patterns Using Nested Contour Shape (중첩윤곽 형상에 의한 한글패턴의 정점검출)

  • Koh, Chan;Lee, Dai-Young
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.15 no.2
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    • pp.112-123
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    • 1990
  • This paper presents a vertex-detecting of Hanguel patterns using nested contour shape. Inputed binary character patterns are transformed by distance transformation method and make a new file of transferred data by analysis of charactersitcs. A new vertex-detecting algorithm for recognizing Hanguel patterns using the two data files is proposed. This algorithm is able to reduce the projecting parts of Hanguel pattern, separate the connecting parts between different strokes, set the code number by transformed value of coorked features. It makes the output of results in order to apply the Hanguel recognition.

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SCANNING ELECTRON MICROSCOPIC STUDY ON THE EFFICACY OF ROOT CANAL WALL DEBRIDEMENT OF ROTARY NI-TI INSTRUMENTS WITH DIFFERENT CUTTING ANGLE (엔진 구동형 니켈-타이타늄 합금파일의 절삭각에 따른 근관성형 효과에 관한 전자현미경적 연구)

  • Jeon, In-Soo;Yoon, Tai-Cheol;Park, Seong-Ho;Kum, Kee-Yeon
    • Restorative Dentistry and Endodontics
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    • v.27 no.6
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    • pp.577-586
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    • 2002
  • The purpose of this in vitro study was to compare the effects of root canal cleanness following two Ni-Ti rotary instruments with different rake angle. Thirty-six sound, extracted human premolars with single root were randomly divided into three groups. The used rotary instruments were HEROShaper (Group 1, Micro-Mega, Besancon, France, n=12) and ProFile (Group 2, Maillefer, Ballaigues, Switzerland, n=12). Control group (n=12) was only extirpated with barbed broach (Mani, Matsutani Seisakusho Co., Japan) Group 1 & 2 teeth were prepared to a #40/.04 taper at the apex followed by 1 mm using crown-down technique. After canal preparation and frequent irrigation with 5.25% sodium hypochlorite, the roots split longitudinally into a bucco-lingual direction. Root halves were cross-sectioned in apical third portion again. All root specimens were processed for SEM investigation and photographed. Separate evaluations by one endodontist were undertaken for smear layer on prepared walls with a five score-index for each using reference photograph in root halves. The penetration depth of smear layer into dentinal tubules was also estimated in the other halves. Following results were obtained: 1. Smear layer was observed on all the prepared walls with two experimental groups except control group. 2. Smear layer characteristics in two experimental groups; 1) HEROShaper group showed snowy, dusty appearance and were shown open dentinal tubuli on the prepared walls of almost specimens, and the thickness of smear layer covering onto dentinal surfaces was within 1-2 ${\mu}m$ in a few specimens. 2) ProFile group showed shiny, burnished appearance and complete root canal wall covered by a homogenous smear layer with no open dentinal tubuli in all specimens. The penetration of smear layer into dentinal tubules was found in all specimens and the thickness was at 2-4 ${\mu}m$ in all specimens. These results demonstrated that a completely clean root canal could not be achieved regardless of positive or negative rake angle, which is in accordance with the majority of previous studies on root canal cleanliness In conclusion, through irrigation with antibacterial solutions or chelating agents is recommended to remove the smear layer on prepared canal wall in spite of Ni-Ti instrumentation.

Research of generate a test case to verify the possibility of external threat of the automotive ECU (차량 ECU의 외부 위협성 가능성을 검증하기 위한 테스트 케이스 생성 연구)

  • Lee, Hye-Ryun;Kim, Kyoung-Jin;Jung, Gi-Hyun;Choi, Kyung-Hee
    • Journal of the Korea Society of Computer and Information
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    • v.18 no.9
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    • pp.21-31
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    • 2013
  • ECU(Electric Control Unit) on the important features of the vehicle is equipped, ECU between sending and receiving messages is connected to one of the internal network(CAN BUS), but this network easily accessible from the outside and not intended to be able to receive attacks from an attacker, In this regard, the development of tools that can be used in order to verify the possibility of attacks on attacks from outside, However, the time costs incurred for developing tools and time to analyze from actual car for CAN messages to be used in the attack to find. In this paper, we want to solve it, propose a method to generate test cases required for the attack is publicly available tool called Sulley and it explains how to find the CAN messages to be used in the attack. Sulley add the CAN messages data generated library files in provided library file and than Sulley execute that make define and execute file conform to the CAN communication preferences and create message rules. Experiments performed by the proposed methodology is applied to the actual car and result, test cases generated by the CAN messages fuzzing through Sulley send in the car and as a result without a separate tool developed was operating the car.

Performance Comparison of TCP and SCTP in Wired and Wireless Internet Environment (유무선 인터넷 환경에서 TCP와 SCTP의 성능 비교)

  • Sasikala, Sasikala;Seo, Tae-Jung;Lee, Yong-Jin
    • 대한공업교육학회지
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    • v.33 no.2
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    • pp.287-299
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    • 2008
  • HTTP is one of the most widely used protocols of the WWW. Currently it uses TCP as the transport layer protocol to provide reliability. The HTTP uses separate TCP connection for each file request and adds unnecessary head-of-line blocking overhead for the file retrieval. The web application is short sized and affected by the increased handover latency of TCP in wireless environment. SCTP has attractive features such as multi-streaming and multi-homing. SCTP's multi-streaming and multi-homing avoid head-of-line blocking problem of TCP and reduce handover latency of TCP in wired and wireless environment. Mean response time is the important measure in most web application. In this paper, we present the comparison of mean response time between HTTP over SCTP with that of HTTP over TCP in wired and wireless environments using NS-2 simulator. We measured mean response time for varying packet loss rate, bandwidth, RTT, and the number of web objects in wired environment and mean response time and packet loss rate for varying moving speed and region size in wireless environment. Our experimental result shows that SCTP reduces the mean response time of TCP based web traffic.

Building a Log Framework for Personalization Based on a Java Open Source (JAVA 오픈소스 기반의 개인화를 지원하는 Log Framework 구축)

  • Sin, Choongsub;Park, Seog
    • KIISE Transactions on Computing Practices
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    • v.21 no.8
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    • pp.524-530
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    • 2015
  • A log is for text monitoring and perceiving the issues of a system during the development and operation of a program. Based on the log, system developers and operators can trace the cause of an issue. In the development phase, it is relatively simple for a log to be traced while there are only a small number of personnel uses of a system such as developers and testers. However, it is the difficult to trace a log when many people can use the system in the operation phase. In major cases, because a log cannot be tracked, even tracing is dropped. This study proposed a simplified tracing of a log during the system operation. Thus, the purpose is to create a log on the run time based on an ID/IP, using features provided by the Logback. It saves an ID/IP of the tracking user on a DB, and loads the user's ID/IP onto the memory to trace once WAS starts running. Before the online service operates, an Interceptor is executed to decide whether to load a log file, and then it generates the service requested by a certain user in a separate log file. The load is insignificant since the arithmetic operation occurs in a JVM, although every service must pass through the Interceptor to be executed.

A Web-based Survey System for the School Operation (학교 운영을 위한 웹기반 설문 시스템)

  • Ahn, Deok-Soon;Park, Pan-U
    • Journal of The Korean Association of Information Education
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    • v.11 no.1
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    • pp.11-19
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    • 2007
  • The 7th education curriculum requires for the aggressive collection and reflection of demands of students, teachers, parents, and local community, necessary for the school operation. In this regard, this study attempts to design and establish the web questionnaire system for the effective school operation. Web-based Survey system, presented in this study, is designed by being divided into administrator(investigator) and respondents, and administrator can manage questionnaires and identify the results by just connecting Internet. In addition, it is designed to do question drawing and statistics in real time within the system without the separate program, by providing file database related to the questions. This system makes the questionnaire survey of school unit easy and fast by being used as a menu in the homepage of school and operated as a single system.

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Developing Standard Transmission System for Radiology Reporting Including Key Images (Key Image를 포함한 방사선과 판독결과지 표준전송시스템 개발)

  • Kim, Seon-Chil
    • Journal of radiological science and technology
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    • v.30 no.1
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    • pp.47-51
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    • 2007
  • Development of hospital information system and Picture Archiving Communication System is not new in the medical field, and the development of internet and information technology are also universal. In the course of such development, however, it is hard to share medical information without a refined standard format. Especially in the department of radiology, the role of PACS has become very important in interchanging information with other disparate hospital information systems. A specific system needs to be developed that radiological reports are archived into a database efficiently. This includes sharing of medical images. A model is suggested in this study in which an internal system is developed where radiologists store necessary images and transmit them in the standard international clinical format, Clinical Document Architecture, and share the information with hospitals. CDA document generator was made to generate a new file format and separate the existing storage system from the new system. This was to ensure the access to required data in XML documents. The model presented in this study added a process where crucial images in reading are inserted in the CDA radiological report generator. Therefore, this study suggests a storage and transmission model for CDA documents, which is different from the existing DICOM SR. Radiological reports could be better shared, when the application function for inserting images and the analysis of standard clinical terms are completed.

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