• IEMEK Journal of Embedded Systems and Applications
• /
• v.18 no.6
• /
• pp.267-275
• /
• 2023

This paper presents the development of specialized software for annotating volume-of-interest on ¹⁸F-FDG PET/CT images with the goal of facilitating the studies and diagnosis of head and neck cancer (HNC). To achieve an efficient annotation process, we employed the SE-Norm-Residual Layer-based U-Net model. This model exhibited outstanding proficiency to segment cancerous regions within ¹⁸F-FDG PET/CT scans of HNC cases. Manual annotation function was also integrated, allowing researchers and clinicians to validate and refine annotations based on dataset characteristics. Workspace has a display with fusion of both PET and CT images, providing enhance user convenience through simultaneous visualization. The performance of deeplearning model was validated using a Hecktor 2021 dataset, and subsequently developed semi-automatic annotation functionalities. We began by performing image preprocessing including resampling, normalization, and co-registration, followed by an evaluation of the deep learning model performance. This model was integrated into the software, serving as an initial automatic segmentation step. Users can manually refine pre-segmented regions to correct false positives and false negatives. Annotation images are subsequently saved along with their corresponding ¹⁸F-FDG PET/CT fusion images, enabling their application across various domains. In this study, we developed a semi-automatic annotation software designed for efficiently generating annotated lesion images, with applications in HNC research and diagnosis. The findings indicated that this software surpasses conventional tools, particularly in the context of HNC-specific annotation with ¹⁸F-FDG PET/CT data. Consequently, developed software offers a robust solution for producing annotated datasets, driving advances in the studies and diagnosis of HNC.

• KIPS Transactions on Software and Data Engineering
• /
• v.11 no.10
• /
• pp.409-418
• /
• 2022

In this paper, we propose SAAnnot-C3Pap, a semi-automatic annotation method for obtaining ground truth of a player's posture. In order to obtain ground truth about the two-dimensional joint position in the existing music domain, openpose, a two-dimensional posture estimation method, was used or manually labeled. However, automatic annotation methods such as the existing openpose have the disadvantages of showing inaccurate results even though they are fast. Therefore, this paper proposes SAAnnot-C3Pap, a semi-automated annotation method that is a compromise between the two. The proposed approach consists of three main steps: extracting postures using openpose, correcting the parts with errors among the extracted parts using supervisely, and then analyzing the results of openpose and supervisely. Perform the synchronization process. Through the proposed method, it was possible to correct the incorrect 2D joint position detection result that occurred in the openpose, solve the problem of detecting two or more people, and obtain the ground truth in the playing posture. In the experiment, we compare and analyze the results of the semi-automated annotation method openpose and the SAAnnot-C3Pap proposed in this paper. As a result of comparison, the proposed method showed improvement of posture information incorrectly collected through openpose.

• Genomics & Informatics
• /
• v.18 no.3
• /
• pp.26.1-26.6
• /
• 2020

Single-cell RNA sequencing (scRNA-seq) has been widely applied to provide insights into the cell-by-cell expression difference in a given bulk sample. Accordingly, numerous analysis methods have been developed. As it involves simultaneous analyses of many cell and genes, efficiency of the methods is crucial. The conventional cell type annotation method is laborious and subjective. Here we propose a semi-automatic method that calculates a normalized score for each cell type based on user-supplied cell type-specific marker gene list. The method was applied to a publicly available scRNA-seq data of mouse cardiac non-myocyte cell pool. Annotating the 35 t-stochastic neighbor embedding clusters into 12 cell types was straightforward, and its accuracy was evaluated by constructing co-expression network for each cell type. Gene Ontology analysis was congruent with the annotated cell type and the corollary regulatory network analysis showed upstream transcription factors that have well supported literature evidences. The source code is available as an R script upon request.

• Journal of KIISE:Software and Applications
• /
• v.37 no.7
• /
• pp.548-557
• /
• 2010

In this paper, we propose a semi-automatic modeling approach of ontology to annotate VOD to realize the IPTV's intelligent searching. The ontology is made by combining partial tree that extracts hypernym, hyponym, and synonym of keywords related to a service domain from WordNet. Further, we add to the partial tree new keywords that are undefined in WordNet, such as foreign words and words written in Chinese characters. The ontology consists of two parts: generic hierarchy and specific hierarchy. The former is the semantic model of vocabularies such as keywords and contents of keywords. They are defined as classes including property restrictions in the ontology. The latter is generated using the reasoning technique by inferring contents of keywords based on the generic hierarchy. An annotation generates metadata (i.e., contents and genre) of VOD based on the specific hierarchy. The generic hierarchy can be applied to other domains, and the specific hierarchy helps modeling the ontology to fit the service domain. This approach is proved as good to generate metadata independent of any specific domain. As a result, the proposed method produced around 82% precision with 2,400 VOD annotation test data.

• Proceedings of the Korean Society for Language and Information Conference
• /
• 2007.11a
• /
• pp.385-393
• /
• 2007

Corpora annotated with lots of linguistic information are required to develop robust and statistical natural language processing systems. Building such corpora, however, is an expensive, labor-intensive, and time-consuming work. To help the work, we design and implement an annotation tool for establishing a Korean dependency tree-tagged corpus. Compared with other annotation tools, our tool is characterized by the following features: independence of applications, localization of errors, powerful error checking, instant annotated information sharing, user-friendly. Using our tool, we have annotated 100,904 Korean sentences with dependency structures. The number of annotators is 33, the average annotation time is about 4 minutes per sentence, and the total period of the annotation is 5 months. We are confident that we can have accurate and consistent annotations as well as reduced labor and time.

• International Journal of Internet, Broadcasting and Communication
• /
• v.16 no.1
• /
• pp.124-131
• /
• 2024

Breast cancer classification using ultrasound, while widely employed, faces challenges due to its relatively low predictive value arising from significant overlap in characteristics between benign and malignant lesions, as well as operator-dependency. To alleviate these challenges and reduce dependency on radiologist interpretation, the implementation of automatic breast cancer classification in ultrasound image can be helpful. To deal with this problem, we propose a semi-supervised deep learning framework for breast cancer classification. In the proposed method, we could achieve reasonable performance utilizing less than 50% of the training data for supervised learning in comparison to when we utilized a 100% labeled dataset for training. Though it requires more modification, this methodology may be able to alleviate the time-consuming annotation burden on radiologists by reducing the number of annotation, contributing to a more efficient and effective breast cancer detection process in ultrasound images.

• Proceedings of the Korean Society of Broadcast Engineers Conference
• /
• 2019.11a
• /
• pp.69-70
• /
• 2019

본 논문에서는 토지 정보를 분류하는 연구를 수행하기 위한 이미지 데이터 셋을 개발하는데 필요한 반자동 annotation 도구를 제안한다. 논문에서 제안하는 도구는 합성개구레이더 영상을 입력으로 하고, 물/경작지/숲/건물을 구분하는 시스템을 개발하기 위해서 만들어진 것이나, 다른 목적을 가지는 토지 관련 이미지 분석 시스템의 개발에 사용될 수 있다. 제안하는 도구는 합성개구레이더 영상이 GPS 정보와 같이 입력되었을 때, GPS 정보에 기반하여 토지지목정보를 불러오고, 이를 재정리하여 1차 레이블링 결과를 자동적으로 생성한다. 국가에서 관리하는 토지지목정보는 개발하고자 하는 시스템의 분류 기준에 많은 부분 도움이 되긴 하지만, 일부분 차이점이 있기 때문에 이를 다시 수동으로 수정하는 도구을 동작하여 annotation이 완료된 이미지 데이터를 구축한다.

• The KIPS Transactions:PartB
• /
• v.13B no.1 s.104
• /
• pp.63-70
• /
• 2006

In general, a corpus contains lots of linguistic information and is widely used in the field of natural language processing and computational linguistics. The creation of such the corpus, however, is an expensive, labor-intensive and time-consuming work. To alleviate this problem, annotation tools to build corpora with much linguistic information is indispensable. In this paper, we design and implement an annotation tool for establishing a Korean dependency tree-tagged corpus. The most ideal way is to fully automatically create the corpus without annotators' interventions, but as a matter of fact, it is impossible. The proposed tool is semi-automatic like most other annotation tools and is designed to edit errors, which are generated by basic analyzers like part-of-speech tagger and (partial) parser. We also design it to avoid repetitive works while editing the errors and to use it easily and friendly. Using the proposed annotation tool, 10,000 Korean sentences containing over 20 words are annotated with dependency structures. For 2 months, eight annotators have worked every 4 hours a day. We are confident that we can have accurate and consistent annotations as well as reduced labor and time.

• International Journal of Computer Science & Network Security
• /
• v.22 no.6
• /
• pp.230-240
• /
• 2022

Sharing of online videos via internet is an emerging and important concept in different types of applications like surveillance and video mobile search in different web related applications. So there is need to manage personalized web video retrieval system necessary to explore relevant videos and it helps to peoples who are searching for efficient video relates to specific big data content. To evaluate this process, attributes/features with reduction of dimensionality are computed from videos to explore discriminative aspects of scene in video based on shape, histogram, and texture, annotation of object, co-ordination, color and contour data. Dimensionality reduction is mainly depends on extraction of feature and selection of feature in multi labeled data retrieval from multimedia related data. Many of the researchers are implemented different techniques/approaches to reduce dimensionality based on visual features of video data. But all the techniques have disadvantages and advantages in reduction of dimensionality with advanced features in video retrieval. In this research, we present a Novel Intent based Dimension Reduction Semi-Supervised Learning Approach (NIDRSLA) that examine the reduction of dimensionality with explore exact and fast video retrieval based on different visual features. For dimensionality reduction, NIDRSLA learns the matrix of projection by increasing the dependence between enlarged data and projected space features. Proposed approach also addressed the aforementioned issue (i.e. Segmentation of video with frame selection using low level features and high level features) with efficient object annotation for video representation. Experiments performed on synthetic data set, it demonstrate the efficiency of proposed approach with traditional state-of-the-art video retrieval methodologies.

• Genomics & Informatics
• /
• v.16 no.4
• /
• pp.40.1-40.3
• /
• 2018

There is a communal need for an annotated corpus consisting of the full texts of biomedical journal articles. In response to community needs, a prototype version of the full-text corpus of Genomics & Informatics, called GNI version 1.0, has recently been published, with 499 annotated full-text articles available as a corpus resource. However, GNI needs to be updated, as the texts were shallow-parsed and annotated with several existing parsers. I list issues associated with upgrading annotations and give an opinion on the methodology for developing the next version of the GNI corpus, based on a semi-automatic strategy for more linguistically rich corpus annotation.