• Genomics & Informatics
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• v.18 no.3
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• pp.26.1-26.6
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• 2020

Single-cell RNA sequencing (scRNA-seq) has been widely applied to provide insights into the cell-by-cell expression difference in a given bulk sample. Accordingly, numerous analysis methods have been developed. As it involves simultaneous analyses of many cell and genes, efficiency of the methods is crucial. The conventional cell type annotation method is laborious and subjective. Here we propose a semi-automatic method that calculates a normalized score for each cell type based on user-supplied cell type-specific marker gene list. The method was applied to a publicly available scRNA-seq data of mouse cardiac non-myocyte cell pool. Annotating the 35 t-stochastic neighbor embedding clusters into 12 cell types was straightforward, and its accuracy was evaluated by constructing co-expression network for each cell type. Gene Ontology analysis was congruent with the annotated cell type and the corollary regulatory network analysis showed upstream transcription factors that have well supported literature evidences. The source code is available as an R script upon request.

• KIPS Transactions on Software and Data Engineering
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• v.11 no.10
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• pp.409-418
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• 2022

In this paper, we propose SAAnnot-C3Pap, a semi-automatic annotation method for obtaining ground truth of a player's posture. In order to obtain ground truth about the two-dimensional joint position in the existing music domain, openpose, a two-dimensional posture estimation method, was used or manually labeled. However, automatic annotation methods such as the existing openpose have the disadvantages of showing inaccurate results even though they are fast. Therefore, this paper proposes SAAnnot-C3Pap, a semi-automated annotation method that is a compromise between the two. The proposed approach consists of three main steps: extracting postures using openpose, correcting the parts with errors among the extracted parts using supervisely, and then analyzing the results of openpose and supervisely. Perform the synchronization process. Through the proposed method, it was possible to correct the incorrect 2D joint position detection result that occurred in the openpose, solve the problem of detecting two or more people, and obtain the ground truth in the playing posture. In the experiment, we compare and analyze the results of the semi-automated annotation method openpose and the SAAnnot-C3Pap proposed in this paper. As a result of comparison, the proposed method showed improvement of posture information incorrectly collected through openpose.

• International Journal of Internet, Broadcasting and Communication
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• v.16 no.1
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• pp.124-131
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• 2024

Breast cancer classification using ultrasound, while widely employed, faces challenges due to its relatively low predictive value arising from significant overlap in characteristics between benign and malignant lesions, as well as operator-dependency. To alleviate these challenges and reduce dependency on radiologist interpretation, the implementation of automatic breast cancer classification in ultrasound image can be helpful. To deal with this problem, we propose a semi-supervised deep learning framework for breast cancer classification. In the proposed method, we could achieve reasonable performance utilizing less than 50% of the training data for supervised learning in comparison to when we utilized a 100% labeled dataset for training. Though it requires more modification, this methodology may be able to alleviate the time-consuming annotation burden on radiologists by reducing the number of annotation, contributing to a more efficient and effective breast cancer detection process in ultrasound images.

• Journal of KIISE:Software and Applications
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• v.37 no.7
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• pp.548-557
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• 2010

In this paper, we propose a semi-automatic modeling approach of ontology to annotate VOD to realize the IPTV's intelligent searching. The ontology is made by combining partial tree that extracts hypernym, hyponym, and synonym of keywords related to a service domain from WordNet. Further, we add to the partial tree new keywords that are undefined in WordNet, such as foreign words and words written in Chinese characters. The ontology consists of two parts: generic hierarchy and specific hierarchy. The former is the semantic model of vocabularies such as keywords and contents of keywords. They are defined as classes including property restrictions in the ontology. The latter is generated using the reasoning technique by inferring contents of keywords based on the generic hierarchy. An annotation generates metadata (i.e., contents and genre) of VOD based on the specific hierarchy. The generic hierarchy can be applied to other domains, and the specific hierarchy helps modeling the ontology to fit the service domain. This approach is proved as good to generate metadata independent of any specific domain. As a result, the proposed method produced around 82% precision with 2,400 VOD annotation test data.

• Journal of KIISE
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• v.42 no.11
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• pp.1397-1403
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• 2015

A named entity(NE) dictionary is an important resource for the performance of NE recognition. However, it is not easy to construct a NE dictionary manually since human annotation is time consuming and labor-intensive. To save construction time and reduce human labor, we propose a semi-automatic system for the construction of a NE dictionary. The proposed system constructs a pseudo-document with Wiki-categories per NE class by using an active learning technique. Then, it calculates similarities between Wiki entries and pseudo-documents using the BM25 model, a well-known information retrieval model. Finally, it classifies each Wiki entry into NE classes based on similarities. In experiments with three different types of NE class sets, the proposed system showed high performance(macro-average F1-score of 0.9028 and micro-average F1-score 0.9554).