• Title/Summary/Keyword: Selection and Elimination

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Quantitative Trait Loci for Stem Length in Soybean Using a Microsatellite Markers (콩에서 Microsatellite 마커를 이용한 양적형질 유전자의 분석)

  • Kim, Hyeun-Kyeung;Kang, Sung-Taeg;Kong, Hyeun-Jong;Park, In-Soo
    • Journal of Life Science
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    • v.14 no.2
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    • pp.339-344
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    • 2004
  • Identification of individual quantitative trait loci (QTL) is a prerequisite to application of marker-assisted selection for stern length. Two simple sequence repeat (SSR)-based linkage maps were constructed from recombination inbred line populations between cross of Keunolkong and Shinpaldalkong. Two parents used differed greatly in stem length, which were 30.57 cm and 49.75 cm in Keunolkong and Shinpaldalkong, respectively. Using the constructed maps, regression analysis and interval mapping were performed to identify QTLs conferring stem length. Four QTLs for stem length on linkage groups (LG) F, J, N and O were identified in the Keunolkong ${\times}$ Shinpaldalkong population and they totally explained 37.83% of variation for stem length. In the population, two major QTLs on LG J and O conditioning 14.25% and 10.68% of the phenotypic variation in stem length were determined and two QTLs with minor effect were detected on LG F and N. Identification of QTLs for stem length and mapping individual locus should facilitate to describe genetic mechanisms for stem length in different population. SSR markers tightly linked to QTLs for stem length allow to accelerate the elimination of deleterious genes and selection for desirable recombinants at early stage in crop breeding programs.

Genetic Diversity and Natural Selection in 42 kDa Region of Plasmodium vivax Merozoite Surface Protein-1 from China-Myanmar Endemic Border

  • Zhou, Xia;Tambo, Ernest;Su, Jing;Fang, Qiang;Ruan, Wei;Chen, Jun-Hu;Yin, Ming-Bo;Zhou, Xiao-Nong
    • Parasites, Hosts and Diseases
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    • v.55 no.5
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    • pp.473-480
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    • 2017
  • Plasmodium vivax merozoite surface protein-1 (PvMSP1) gene codes for a major malaria vaccine candidate antigen. However, its polymorphic nature represents an obstacle to the design of a protective vaccine. In this study, we analyzed the genetic polymorphism and natural selection of the C-terminal 42 kDa fragment within PvMSP1 gene ($PvMSP1_{42}$) from 77 P. vivax isolates, collected from imported cases of China-Myanmar border (CMB) areas in Yunnan province and the inland cases from Anhui, Yunnan, and Zhejiang province in China during 2009-2012. Totally, 41 haplotypes were identified and 30 of them were new haplotypes. The differences between the rates of non-synonymous and synonymous mutations suggest that $PvMSP1_{42}$ has evolved under natural selection, and a high selective pressure preferentially acted on regions identified of $PvMSP1_{33}$. Our results also demonstrated that $PvMSP1_{42}$ of P. vivax isolates collected on China-Myanmar border areas display higher genetic polymorphisms than those collected from inland of China. Such results have significant implications for understanding the dynamic of the P. vivax population and may be useful information towards China malaria elimination campaign strategies.

Fast Motion Estimation Algorithm using Selection of Candidates and Stability of Optimal Candidates (후보 선별과 최적후보 안정성을 이용한 고속 움직임 예측 알고리즘)

  • Kim, Jong Nam
    • Journal of Broadcast Engineering
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    • v.23 no.5
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    • pp.628-635
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    • 2018
  • In this paper, we propose a fast motion estimation algorithm which is important in video encoding. So many fast motion estimation algorithms have been published for improving prediction quality and computational reduction. In the paper, we propose an algorithm that reduces unnecessary computation, while almost keeping prediction quality compared with the full search algorithm. The proposed algorithm calculates the sum of partial block matching error for each candidate, selects the candidates for the next step, compares the stability of optimal candidates with minimum error, and finds optimal motion vectors by determining the progress of the next step. By doing that, we can find the minimum error point as soon as possible and obtain fast computational speed by reducing unnecessary computations. Additionally, the proposed algorithm can be used with conventional fast motion estimation algorithms and prove it in the experimental results.

Selective Word Embedding for Sentence Classification by Considering Information Gain and Word Similarity (문장 분류를 위한 정보 이득 및 유사도에 따른 단어 제거와 선택적 단어 임베딩 방안)

  • Lee, Min Seok;Yang, Seok Woo;Lee, Hong Joo
    • Journal of Intelligence and Information Systems
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    • v.25 no.4
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    • pp.105-122
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    • 2019
  • Dimensionality reduction is one of the methods to handle big data in text mining. For dimensionality reduction, we should consider the density of data, which has a significant influence on the performance of sentence classification. It requires lots of computations for data of higher dimensions. Eventually, it can cause lots of computational cost and overfitting in the model. Thus, the dimension reduction process is necessary to improve the performance of the model. Diverse methods have been proposed from only lessening the noise of data like misspelling or informal text to including semantic and syntactic information. On top of it, the expression and selection of the text features have impacts on the performance of the classifier for sentence classification, which is one of the fields of Natural Language Processing. The common goal of dimension reduction is to find latent space that is representative of raw data from observation space. Existing methods utilize various algorithms for dimensionality reduction, such as feature extraction and feature selection. In addition to these algorithms, word embeddings, learning low-dimensional vector space representations of words, that can capture semantic and syntactic information from data are also utilized. For improving performance, recent studies have suggested methods that the word dictionary is modified according to the positive and negative score of pre-defined words. The basic idea of this study is that similar words have similar vector representations. Once the feature selection algorithm selects the words that are not important, we thought the words that are similar to the selected words also have no impacts on sentence classification. This study proposes two ways to achieve more accurate classification that conduct selective word elimination under specific regulations and construct word embedding based on Word2Vec embedding. To select words having low importance from the text, we use information gain algorithm to measure the importance and cosine similarity to search for similar words. First, we eliminate words that have comparatively low information gain values from the raw text and form word embedding. Second, we select words additionally that are similar to the words that have a low level of information gain values and make word embedding. In the end, these filtered text and word embedding apply to the deep learning models; Convolutional Neural Network and Attention-Based Bidirectional LSTM. This study uses customer reviews on Kindle in Amazon.com, IMDB, and Yelp as datasets, and classify each data using the deep learning models. The reviews got more than five helpful votes, and the ratio of helpful votes was over 70% classified as helpful reviews. Also, Yelp only shows the number of helpful votes. We extracted 100,000 reviews which got more than five helpful votes using a random sampling method among 750,000 reviews. The minimal preprocessing was executed to each dataset, such as removing numbers and special characters from text data. To evaluate the proposed methods, we compared the performances of Word2Vec and GloVe word embeddings, which used all the words. We showed that one of the proposed methods is better than the embeddings with all the words. By removing unimportant words, we can get better performance. However, if we removed too many words, it showed that the performance was lowered. For future research, it is required to consider diverse ways of preprocessing and the in-depth analysis for the co-occurrence of words to measure similarity values among words. Also, we only applied the proposed method with Word2Vec. Other embedding methods such as GloVe, fastText, ELMo can be applied with the proposed methods, and it is possible to identify the possible combinations between word embedding methods and elimination methods.

Temporal distritution analysis of design rainfall by significance test of regression coefficients (회귀계수의 유의성 검정방법에 따른 설계강우량 시간분포 분석)

  • Park, Jin Heea;Lee, Jae Joon
    • Journal of Korea Water Resources Association
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    • v.55 no.4
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    • pp.257-266
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    • 2022
  • Inundation damage is increasing every year due to localized heavy rain and an increase of rainfall exceeding the design frequency. Accordingly, the importance of hydraulic structures for flood control and defense is also increasing. The hydraulic structures are designed according to its purpose and performance, and the amount of flood is an important calculation factor. However, in Korea, design rainfall is used as input data for hydrological analysis for the design of hydraulic structures due to the lack of sufficient data and the lack of reliability of observation data. Accurate probability rainfall and its temporal distribution are important factors to estimate the design rainfall. In practice, the regression equation of temporal distribution for the design rainfall is calculated using the cumulative rainfall percentage of Huff's quartile method. In addition, the 6th order polynomial regression equation which shows high overall accuracy, is uniformly used. In this study, the optimized regression equation of temporal distribution is derived using the variable selection method according to the principle of parsimony in statistical modeling. The derived regression equation of temporal distribution is verified through the significance test. As a result of this study, it is most appropriate to derive the regression equation of temporal distribution using the stepwise selection method, which has the advantages of both forward selection and backward elimination.

Transformation of Dynamic Loads into Equivalent Static Loads by the Selection Scheme of Primary Degrees of Freedom (주자유도 선정 기법에 의한 동하중의 등가 정하중으로의 변환)

  • Kim, Hyun-Gi;Cho, Maeng-Hyo
    • Journal of the Computational Structural Engineering Institute of Korea
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    • v.20 no.1
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    • pp.57-63
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    • 2007
  • The systematic method to construct equivalent static load from a given dynamic load is proposed in the present study. Previously reported works to construct equivalent static load were based on ad hoc methods. Due to improper selection of loading position, they may results in unreliable structural design. The present study proposes the employment of primary degrees of freedom for imposing the equivalent static loads. The degrees of freedom are selected by two-level condensation scheme with reliability and efficiency. In several numerical examples, the efficiency and reliability of the proposed scheme is verified by comparison displacement for equivalent static loading and dynamic loading at the critical time.

Equalizer Mode Selection Method for Improving Bit Error Performance of Underwater Acoustic Communication Systems (수중음향통신 시스템의 비트 오류 성능 향상을 위한 등화 모드 선택 방법)

  • Kim, Hyeon-Su;Seo, Jong-Pil;Kim, Jae-Young;Kim, Seong-Il;Chung, Jae-Hak
    • The Journal of the Acoustical Society of Korea
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    • v.31 no.1
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    • pp.1-10
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    • 2012
  • The linear and decision-feedback equalization can mitigate time-varying intersymbol interference (ISI) caused by time-varying multipath propagation for underwater acoustic channels. The perfect elimination of interference components, however, is difficult using the linear equalization and the decision feedback equalizer has an error propagation problem. To overcome these shortcomings, this paper proposes an equalizer mode selection method using training sequences. The proposed method selects an equalization mode corresponding to the signal-to-noise ratio (SNR). If the SNR is low, the proposed system operates the linear equalizer for preventing the error propagation and if the SNR is high, the decision feedback equalizer for eliminating the residual ISI. Therefore, the proposed method can improve the error performance compared to the conventional equalizers. The computer simulation shows the proposed method improves the bit error performance using practical underwater channels responses acquired from the sea experiment.

Prediction of Customer Satisfaction Using RFE-SHAP Feature Selection Method (RFE-SHAP을 활용한 온라인 리뷰를 통한 고객 만족도 예측)

  • Olga Chernyaeva;Taeho Hong
    • Journal of Intelligence and Information Systems
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    • v.29 no.4
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    • pp.325-345
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    • 2023
  • In the rapidly evolving domain of e-commerce, our study presents a cohesive approach to enhance customer satisfaction prediction from online reviews, aligning methodological innovation with practical insights. We integrate the RFE-SHAP feature selection with LDA topic modeling to streamline predictive analytics in e-commerce. This integration facilitates the identification of key features-specifically, narrowing down from an initial set of 28 to an optimal subset of 14 features for the Random Forest algorithm. Our approach strategically mitigates the common issue of overfitting in models with an excess of features, leading to an improved accuracy rate of 84% in our Random Forest model. Central to our analysis is the understanding that certain aspects in review content, such as quality, fit, and durability, play a pivotal role in influencing customer satisfaction, especially in the clothing sector. We delve into explaining how each of these selected features impacts customer satisfaction, providing a comprehensive view of the elements most appreciated by customers. Our research makes significant contributions in two key areas. First, it enhances predictive modeling within the realm of e-commerce analytics by introducing a streamlined, feature-centric approach. This refinement in methodology not only bolsters the accuracy of customer satisfaction predictions but also sets a new standard for handling feature selection in predictive models. Second, the study provides actionable insights for e-commerce platforms, especially those in the clothing sector. By highlighting which aspects of customer reviews-like quality, fit, and durability-most influence satisfaction, we offer a strategic direction for businesses to tailor their products and services.

Current status of surgery first approach (part II): precautions and complications

  • Kwon, Tae-Geon;Han, Michael D.
    • Maxillofacial Plastic and Reconstructive Surgery
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    • v.41
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    • pp.23.1-23.10
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    • 2019
  • The choice of surgical technique in orthognathic surgery is based primarily on the surgical treatment objectives (STO), which is a fundamental component of the orthognathic treatment process. In the conventional orthodontics-first approach, presurgical planning can be performed twice, during the preorthodontic (initial STO) and presurgical phases (final STO). Recently, a surgery-first orthognathic approach (SFA) without presurgical orthodontic treatment has been introduced and combined initial and final STO at the same time. In contrast to the conventional surgical-orthodontic treatment protocol that includes preoperative orthodontics for dental decompensations to maximize stable postoperative occlusion, the SFA potentially shortens the treatment period and minimizes esthetic concerns during the decompensation period because skeletal problems are corrected from the beginning. The indications for the SFA have been proposed in the literature, but no consensus exists. Moreover, because dental occlusion of the pre-orthodontic arches cannot be used as a guide for establishing the surgical treatment plan, there are fundamental limitations in accurate prediction of postsurgical results in the SFA. Recently, the concepts of postsurgical orthodontic treatment are continuously changing and evolving to overcome this inherent limitation of the SFA. The elimination of presurgical orthodontics can change the paradigm of orthognathic surgery but still requires cautious case selection and thorough discussion and collaboration between orthodontists and surgeons regarding the goals and postoperative management of the orthognathic procedure.

Efficient Energy and Position Aware Routing Protocol for Wireless Sensor Networks

  • Shivalingagowda, Chaya;Jayasree, P.V.Y;Sah, Dinesh.K.
    • KSII Transactions on Internet and Information Systems (TIIS)
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    • v.14 no.5
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    • pp.1929-1950
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    • 2020
  • Reliable and secure data transmission in the application environment assisted by the wireless sensor network is one of the major challenges. Problem like blind forwarding and data inaccessibility affect the efficiency of overall infrastructure performance. This paper proposes routing protocol for forwarding and error recovery during packet loss. The same is achieved by energy and hops distance-based formulation of the routing mechanism. The reachability of the intermediate node to the source node is the major factor that helps in improving the lifetime of the network. On the other hand, intelligent hop selection increases the reliability over continuous data transmission. The number of hop count is factor of hop weight and available energy of the node. The comparison over the previous state of the art using QualNet-7.4 network simulator shows the effectiveness of proposed work in terms of overall energy conservation of network and reliable data delivery. The simulation results also show the elimination of blind forwarding and data inaccessibility.