• Proceedings of the National Institute of Ecology of the Republic of Korea
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• v.3 no.2
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• pp.84-96
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• 2022

Most of the islands of Korea are distributed in the South and West Sea, and it consists of independent small stream. As a result, the fish community that inhabits the island's stream is isolated from the mainland and other island. This study utilized a Self-Organizing Map (SOM) and a random forest model to analyze the relationship between environmental variables and fish communities inhabiting islands in South Korea. Through the SOM analysis, the fish communities were divided into three clusters, and there were differences in biotic and abiotic factors between these groups. Cluster I consisted of sites with relatively larger island areas and a higher number of species and population. It was found that 15 out of 16 indicator species were included. Meanwhile, the remaining clusters had fewer species and populations. Cluster II, especially, showed the lowest impact from physical variables such as water width and depth. As a result of predicting the species richness using the random forest model, physical variables in habitats, such as stream width and water depth, had a relatively higher importance on species richness. On the other hand, forest area was the most important variables for predicting Shannon diversity, followed by maximum water depth, and gravel. The results suggest that this study can be used as basic data for establishing a stream ecosystem management strategy in terms of conservation and protection of biological resources in streams of islands.

• The Korean Journal of Mycology
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• v.42 no.1
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• pp.34-39
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• 2014

In this study, the community structures of arbuscular mycorrhizal fungi (AMF) in rhizospheres of Camellia japonica and neighboring woody plants in Wando, Korea were investigated. Rhizospheres of C. japonica and other woody plants were dominated by the same species, Acaulospora mellea, but Shannon's index, species richness and total spore numbers of the AMF communities were higher in non-C. japonica than in neighboring plants. Regardless of host plant species, the frequency of A. mellea was significantly high comparing with other AMF species. The community similarity of AMF within C. japonica was significantly higher than between C. japonica and neighboring plants or neighboring plants (p<0.005). Results showed that AM fungal communities in rhizospheres of C. japonica have unique community structure and are different from that of neighboring host plants, suggesting that community structure of AMF could be influenced by host plant species.

• Korean Journal of Environment and Ecology
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• v.26 no.5
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• pp.758-769
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• 2012

This study is aimed at analyzing the structural characteristics of vegetation in the Sangwonsa(Temple) valley, Yongmunsan(Mt.), and to collect basic data for research of large mountains which are located in the temperate, central region. The research on the entire vegetation struc trees are distributed over a wide area, accounting for 75.0% of theture of Sangwonsa(Temple) valley observed that oak total vegetation in the area. We examined 17 plots(unit area: $400m^2$) in the deciduous forest, dividing the trees into 5 community types based on the average important value. The 5 community types are as follows: A mixed dominant group of Carpinus laxiflora and Quercus serrata, a mixed dominant group of Quercus serrata and Quercus variabilis, a mixed dominant group of Quercus mongolica and Quercus serrata, a dominant group of Quercus serrata, a dominant group of Acer pictum supsp. mono. It is expected that the oak trees competing with Carpinus laxiflora and Acer pictum supsp. mono would flourish in a deciduous forest. The Shannon's species diversity index(H') was 0.3708~1.3083.

• The Korean Journal of Mycology
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• v.40 no.1
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• pp.1-6
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• 2012

In this study, soil samples were collected from cultivated fields of 1-5 year old Korean ginseng in Geumsan, Korea. Spores of arbuscular mycorrhizal fungi were extracted from soils and identified using morphological characteristics and 18s rDNA sequences of the spores. Total 10 species of AMF were identified: Acaulospora longula, Archaeospora trappei, Glomus caledonium, Glomus etunicatum, Glomus intraradices, Glomus mosseae, Glomus sp., Paraglomus occultum, Paraglomus brasilianum, and Scutellospora heterogama. Relative abundance of spores of A. trappei were increased with increase of cultivation period of the ginseng. However, relative abundance of other species of AMF and Shannon diversity (H') of AMF were significantly decreased with the increase of cultivation periods of the ginseng.

• Asian-Australasian Journal of Animal Sciences
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• v.31 no.8
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• pp.1285-1290
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• 2018

Objective: This study shows the effects of dietary fiber levels on cecal microbiota composition in geese at day 70 according to pyrosequencing of the 16S ribosomal RNA gene. Methods: A total of 468 1-day-old healthy male Yangzhou goslings with similar body weight were randomly divided into 3 groups with 6 replicates per group and 26 geese per replicate. Geese were fed diets with fiber levels of 2.5% (low fiber level diet, Group I) and 6.1% (Group III) during days 1-70, respectively, or 4.3% for days 1-28 and 6.1% for days 29-70 (Group II). Results: Low fiber level diet decreased body weight, average daily gain during, increased lower feed conversation rate of geese during day 1 to 70 (p<0.05). Low fiber level diet decreased the total operational taxonomic units, Chao1 index and Shannon index, whereas increased the Simpson index of cecal microbiota in geese at day 70. Low fiber level diet decreased the relative abundance of Bacteroidetes, Firmicutes, Bacteroides, and Paraprevotella in cecum of geese at day 70. The similarity of cecal microbiota between low fiber level diet group and other groups was smaller. Conclusion: This study indicates that the low fiber level diet decreased diversity of microbiota, and relative abundance of some beneficial microbiota in cecum of geese at day 70, implying that the low fiber level diet has negative influence on performance by altering the diversity and population of cecal microbiota in geese.

• Journal of Life Science
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• v.17 no.1 s.81
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• pp.24-30
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• 2007

Inter simple sequence repeat (ISSR) markers were performed in order to analyse the genetic relation-ships of both taxa of Gardenia jasminoides var. radicans and G. jasminoides for. grandifora. Over the 88 fragments, only one locus (ISSR-11-05) was specific to G. jasminoides var. radicans and only one (ISSR-09-05) G. jasminoides for. grandiflora. Although G. jasminoides var. radicans showed low levels of alleles and Shannon's information index than G. jasminoides for. Grandiflora, however, there was not significant differences (p > 0.05). For both taxa the mean genetic diversity of natural populations was higher than that of cultivation populations. It was suggested that domestication processes via artificial selection do not have eroded the high levels of genetic diversity. ISSR markers were more effective in classifying natural populations of wild G. jasminoides in East Asia as well as cultivated G. jasminoides. The information about the phylogenetic relationship of G. jasminoides var. radicans and its closely related species is very valuable of the systematics of genus Gardenia, the origin of cultivated G. jasminoides, and future G. jasminoides breeding.

• Korean Journal of Environment and Ecology
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• v.11 no.4
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• pp.493-505
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• 1998

To study vegetation structure and distance between trees of Pinus densiflora forest in Chayang-chon area, Soraksan National Park, thirty-nine plots(10m$\times$10m) were established. They were classified into two communities by TWINSPAN and DCA technique. In the Community I, P. densiflora(DBH 35~75cm, height 9~16m, age 60~80) dominated in canopy and were predicted to be changed by deciduous broad-leaved trees also. In the Community II, P. densiflora(DBH 9~26.5cm, height 9~16m, age 30~50m) dominated in canopy. It seemed that the community II would maintain P. densiflora community for a long time since P. densiflora dominated in both canopy and understory. Shonnon's diversity index was higher in the community II(1.4247) than in the community I(1.2978). The distantes between canopy trees were 4.92$\pm $2.14m in the community I and 2.41$\pm $0.97m in the community II. The regression between DBH in canpy and ecological distance was Y(Distance) = 0.06355$\times $(DBH)+1.51613.

• Korean Journal of Environment and Ecology
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• v.29 no.2
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• pp.250-262
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• 2015

This study aims to investigate the characteristics of the vegetation structure in the sectin stretching between the Jilmoi wetlands and the Donghae Observatory and to set the criteria for the basic data for a management plan including restoration afterwards. 12 plots($10m{\times}40m$, $20m{\times}20m$) were set up to analyse the vegetation structure. The analysis of the classification by TWINSPAN and ordination by DCA, importance percentage and property, distribution of diameter of breast height, growth increments of major woody species, species diversity and the physicochemical properties of soil were all analyzed. Vegetation classes were divided into 3 communities, which are community I (Pinus densiflora community), community II (Quercus mongolica community) and community III (Quercus mongolica-Tilia amurensis community). The P. densiflora community declined when competing with Q. mongolica and Fraxinus rhynchophylla and Q. mongolica competed with T. amurensis on an understory layer in Q. mongolica community. Q. mongolica competed with T. amurensis on both canopy and understory layers in Q. mongolica-T. amurensis community. P. densiflora declined and it was assumed to succeed to F. rhynchophylla or T. amurensis through Q. mongolica based on the importance percentage and distribution of the diameter of the breast height of small and middle sized trees. The age of P. densiflora was between 47 to 51 years old and Q. mongolica was 61years old. T. amurensis was 61 years old and the growth of Q. mongolica slowed a little. As the result of Shannon's index of species diversity, community I ranged from 0.9578 to 1.1862, community II ranged from 0.7904 to 1.2286 and community III ranged from 0.8701 to 1.0323. The contents of organic matter and cation were low compared to uncultivated mountain soil and it were analysed to be inappropriate for tree growth.

• Mycobiology
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• v.48 no.5
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• pp.351-363
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• 2020

Here, we investigated fungal microbiota in the understory root layer of representative well-conserved geographically segregated natural wetlands in the Korean Peninsula. We obtained 574,143 quality fungal sequences in total from soil samples in three wetlands, which were classified into 563 operational taxonomic units (OTU), 5 phyla, 84 genera. Soil texture, total nitrogen, organic carbon, pH, and electrical conductivity of soil were variable between geographical sites. We found significant differences in fungal phyla distribution and ratio, as well as genera variation and richness between the wetlands. Diversity was greater in the Jangdo islands wetland than in the other sites (Chao richness/Shannon/Simpson's for wetland of the Jangdo islands: 283/6.45/0.97 > wetland of the Mt. Gariwang primeval forest: 169/1.17/0.22 > wetland of the Hanbando geology: 145/4.85/0.91), and this variance corresponded to the confirmed number of fungal genera or OTUs (wetlands of Jangdo islands: 42/283> of Mt. Gariwang primeval forest: 32/169> of the Hanbando geology: 25/145). To assess the uniqueness of the understory root layer fungus taxa, we analyzed fungal genera distribution. We found that the percentage of fungal genera common to two or three wetland sites was relatively low at 32.3%, while fungal genera unique to each wetland site was 67.7% of the total number of identified fungal species. The Jangdo island wetland had higher fungal diversity than did the other sites and showed the highest level of uniqueness among fungal genera (Is. Jangdo wetland: 34.5% > wetland of Mt. Gariwang primeval forest: 28.6% > wetland of the Hanbando geology: 16.7%).

• The Korean Journal of Mycology
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• v.47 no.3
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• pp.199-208
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• 2019

In this study, the community structures of the ectomycorrhizal (ECM) fungi in the roots of Abies koreana and Taxus cuspidata were investigated at different altitudes of Mt. Halla. We identified the collected ECM root tips based on morphological characteristics and phylogenetic analysis through sequencing of the rDNA ITS regions. From the roots of A. koreana and T. cuspidata, 11 species and 12 species were identified, respectively. The Shannon's index and species evenness and abundance of the ECM fungi were higher in the higher than lower regions, regardless of host plant species, however, the number of ECM root tips showed the opposite pattern. The community similarity among the ECM fungi in A. koreana was significantly higher than that among the ECM fungi in T. cuspidata or than that between A. koreana and T. cuspidata (p < 0.05). These results could be useful for the conservation and management of the habitat of A. koreana, which is threatened with extinction due to increasing ambient air temperature.