• 제목/요약/키워드: SAM decarboxylase

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CoA Transferase and Malonyl-CoA Decarboxylase Activity of Malonate Decarboxylase from Acinetobacter calcoaceticus

  • Byun, Hye-Sin;Kim, Yu-Sam
    • BMB Reports
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    • 제30권4호
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    • pp.246-252
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    • 1997
  • Malonate decarboxylase from Acinetobacter calcoaceticus is shown to have malonyl-CoA: acetate CoA transferase. acetyl-CoA: malonate CoA transferase, and malonyl-CoA decarboxylase activity. These enzyme activities were elucidated by isotope exchange reactions. The enzyme modified by N-ethylmaleimide completely lost its malonate decarboxylase activity, whereas it still kept CoA transferases and malonyl-CoA decarboxylase activities. The existence of CoA transferases and malonyl-CoA decarboxylase activity is clear, but their physiological significance is obscure. The catalytic reactions for two eoA transfers and malonyl-CoA decarboxylation proceed via a cyclic mechanism, which is through two covalent intermediates, enzyme-Smalonyl and enzyme-S-acetyL proposed for malonate decarboxylation of the enzyme.

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Metabolic Routes of Malonate in Pseudomonas fluorescens and Acinetobacter calcoaceticus

  • Byun, Hye-Sin;Kim, Yu-Sam
    • BMB Reports
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    • 제28권2호
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    • pp.107-111
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    • 1995
  • In malonate grown Pseudomonas fluorescens, malonate decarboxylase and acetyl-CoA synthetase were induced, whereas in Acinetobacter calcoaceticus malonate decarboxylase, acetate kinase, and phosphate acetyltransferase were induced. In both bacteria malonate decarboxylase was the first, key enzyme catalyzing the decarboxylation of malonate to acetate, and it was localized in the periplasmic space. Acetate thus formed was metabolized to acetyl-CoA directly by acetyl-CoA synthetase in Pseudomonas, and to acetyl-CoA via acetyl phosphate by acetate kinase and phosphate acetyltransferase in Acinetobacter.

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Properties of Malonyl-CoA Decarboxylase from Rhizobium trifolii

  • An, Jae-Hyung;Lee, Gha-Young;Song, Jong-Hee;Lee, Dai-Woon;Kim, Yu-Sam
    • BMB Reports
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    • 제32권4호
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    • pp.414-418
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    • 1999
  • A novel gene for malonyl-CoA decarboxylase was discovered in the mat operon, which encodes a set of genes involved in the malonate metabolism of Rhizobium trifolii (An and Kim, 1998). The subunit mass determined by SDS-PAGE was 53 kDa, which correspond to the deduced mass from the sequence data. The molecular mass of the native enzyme determined by field flow fractionation was 208 kDa, indicating that R. trifolii malonyl-CoA decarboxylase is homotetrameric. R. trifolii malonyl-CoA decarboxylase converted malonyl-CoA to acetyl-CoA with a specific activity of 100 unit/mg protein. Methylmalonyl-CoA was decarboxylated with a specific activity of 0.1 unit/mg protein. p-Chloromercuribenzoate inhibited this enzyme activity, suggesting that thiol group(s) is(are) essential for this enzyme catalysis. Database analysis showed that malonyl-CoA decarboxylase from R. trifolii shared 32.7% and 28.1% identity in amino acid sequence with those from goose and human, respectively, and it would be located in the cytoplasm. However, there is no sequence homology between this enzyme and that from Saccharopolyspora erythreus, suggesting that malonyl-CoA decarboxylases from human, goose, and R. trifolii are in the same class, whereas that from S. erythreus is in a different class or even a different enzyme, methylmalonyl-CoA decarboxylase. According to the homology analysis, Cys-214 among three cysteine residues in the enzyme was found in the homologous region, suggesting that the cysteine was located at or near the active site and plays a critical role in catalysis.

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Rat Malonyl-CoA Decarboxylase; Cloning, Expression in E. coli and its Biochemical Characterization

  • Lee, Gha-Young;Bahk, Young-Yil;Kim, Yu-Sam
    • BMB Reports
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    • 제35권2호
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    • pp.213-219
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    • 2002
  • Malonyl-CoA decarboxylase (E.C.4.1.1.9) catalyzes the conversion of malonyl-CoA to acetyl-CoA. Although the metabolic role of this enzyme has not been fully defined, it has been reported that its deficiency is associated with mild mental retardation, seizures, hypotonia, cadiomyopathy, developmental delay, vomiting, hypoglycemia, metabolic acidosis, and malonic aciduria. Here, we isolated a cDNA clone for malonyl CoA decarboxylase from a rat brain cDNA library, expressed it in E. coli, and characterized its biochemical properties. The full-length cDNA contained a single open-reading frame that encoded 491 amino acid residues with a calculated molecular weight of 54, 762 Da. Its deduced amino acid sequence revealed a 65.6% identity to that from the goose uropigial gland. The sequence of the first 38 amino acids represents a putative mitochondrial targeting sequence, and the last 3 amino acid sequences (SKL) represent peroxisomal targeting ones. The expression of malonyl CoA decarboxylase was observed over a wide range of tissues as a single transcript of 2.0 kb in size. The recombinant protein that was expressed in E. coli was used to characterize the biochemical properties, which showed a typical Michaelis-Menten substrate saturation pattern. The $K_m$ and $V_{max}$ were calculated to be $68\;{\mu}M$ and $42.6\;{\mu}mol/min/mg$, respectively.

Identification of Dopa decarboxylase associated protein from Bombyx mori

  • Hwang, Jae-Sam;Kim, Sung-Kuk;Kang, Seok-Woo;Goo, Tae-Won;Yun, Eun-Young;Park, Kwang-Ho;Chang, Jong-Soo
    • 한국잠사학회:학술대회논문집
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    • 한국잠사학회 2003년도 International Symposium of Silkworm/Insect Biotechnology and Annual Meeting of Korea Society of Sericultural Science
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    • pp.97-98
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    • 2003
  • Current study was aimed to understand an interaction between Dopa decarboxylase (DDC) and proteins that specifically binds to DDC in the silkworm, Bombyx mori. Materials and Methods: Materials-Animal: Bombyx mori Construction of GST fusion protein Preparation of lysates: Protein extracted from whole body of Bombyx mori Methods-In vitro binding assay with lysates, Peptide sequence and RACE-PCR (omitted)

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Diapause-associated transcription of Dopa decarboxylase in Bombyx mori and evolutionary relationship to other species

  • Hwang, Jae-Sam;Kang, Seok-Woo;Goo, Tae-Won;Yun, Eun-Young;Park, Kwang-Ho;Kim, Sung-Kuk
    • 한국잠사학회:학술대회논문집
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    • 한국잠사학회 2003년도 제46회 춘계 학술연구 발표회
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    • pp.49-49
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    • 2003
  • DOPA decarboxylase (DDC), which converts DOPA to dopamine, is important for many biological event such as cuticular melanization, sclerotization and neurotransmission in insects. Recently, it has been also shown that DDC activity is correlated with pupal diapause in M. brassicae. The silkworm, Bombyx mori is a typical insect diapausing at early embryonic stage. (omitted)

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Pseudomonas fluorescens에 있는 하나의 Plasmid가 말론산 대사에 관련된 유전자를 가지고 있다는 증거 (Evience that a Plasmid Endoces Genes for Metabolism of Malonte in Pseudomonas fluorescens)

  • 김유삼;김은주
    • 미생물학회지
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    • 제32권3호
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    • pp.192-197
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    • 1994
  • 말론산을 탄소원으로 하여 성장하는 Pseudomonas fluorescens에서 60 kb 정도의 plasmid를 발견하였다. 이 plasmid를 curing한 Pseudomonas는 malonate 배지에서 자라지 못하였고 plasmid도 소실되었다. 또한 이 plasmid를 transformation과 conjugation으로 각각 E. coli와 cured P. fluorescens로 이동시킨 결과 이 plasmid를 받은 transformed E. coli와 conjugant P. fluorescens는 malonate를 탄소원으로 하여 성장하였고 malonate 대사에 관련된 효소인 malonate decarboxylase와 acetyl-CoA synthetase의 활성이 측정되었다. Western blotting을 통하여 tansformed E. coli에서 P. fluorescens와 동일한 acetyl-CoA synthetase가 malonate에 의해 induction됨을 확인하였다.

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Molecular cloning and characterization of the dopa decarboxylase gene from Antheraea yamamai

  • Kim, Sung-Kuk;Hwang, Jae-Sam;Kang, Seok-Woo;Goo, Tae-Won;Yun, Eun-Young;Choi, Kwang-Ho;Chang, Jong-Soo
    • 한국잠사학회:학술대회논문집
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    • 한국잠사학회 2003년도 International Symposium of Silkworm/Insect Biotechnology and Annual Meeting of Korea Society of Sericultural Science
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    • pp.151-152
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    • 2003
  • To understand the relationship between DDC activity and diapause or other biological events in Antheraea yamamai, we have determined a complete cDNA sequence of DDC homologue from Antheraea yamamai and have examined expression patterns in various tissues by Northern blot analysis. (omitted)

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