• Title/Summary/Keyword: Recursive Feature Elimination, RFE

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Gene Selection Based on Support Vector Machine using Bootstrap (붓스트랩 방법을 활용한 SVM 기반 유전자 선택 기법)

  • Song, Seuck-Heun;Kim, Kyoung-Hee;Park, Chang-Yi;Koo, Ja-Yong
    • The Korean Journal of Applied Statistics
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    • v.20 no.3
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    • pp.531-540
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    • 2007
  • The recursive feature elimination for support vector machine is known to be useful in selecting relevant genes. Since the criterion for choosing relevant genes is the absolute value of a coefficient, the recursive feature elimination may suffer from a scaling problem. We propose a modified version of the recursive feature elimination algorithm using bootstrap. In our method, the criterion for determining relevant genes is the absolute value of a coefficient divided by its standard error, which accounts for statistical variability of the coefficient. Through numerical examples, we illustrate that our method is effective in gene selection.

Variable Selection of Feature Pattern using SVM-based Criterion with Q-Learning in Reinforcement Learning (SVM-기반 제약 조건과 강화학습의 Q-learning을 이용한 변별력이 확실한 특징 패턴 선택)

  • Kim, Chayoung
    • Journal of Internet Computing and Services
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    • v.20 no.4
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    • pp.21-27
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    • 2019
  • Selection of feature pattern gathered from the observation of the RNA sequencing data (RNA-seq) are not all equally informative for identification of differential expressions: some of them may be noisy, correlated or irrelevant because of redundancy in Big-Data sets. Variable selection of feature pattern aims at differential expressed gene set that is significantly relevant for a special task. This issues are complex and important in many domains, for example. In terms of a computational research field of machine learning, selection of feature pattern has been studied such as Random Forest, K-Nearest and Support Vector Machine (SVM). One of most the well-known machine learning algorithms is SVM, which is classical as well as original. The one of a member of SVM-criterion is Support Vector Machine-Recursive Feature Elimination (SVM-RFE), which have been utilized in our research work. We propose a novel algorithm of the SVM-RFE with Q-learning in reinforcement learning for better variable selection of feature pattern. By comparing our proposed algorithm with the well-known SVM-RFE combining Welch' T in published data, our result can show that the criterion from weight vector of SVM-RFE enhanced by Q-learning has been improved by an off-policy by a more exploratory scheme of Q-learning.

Development of suspended solid concentration measurement technique based on multi-spectral satellite imagery in Nakdong River using machine learning model (기계학습모형을 이용한 다분광 위성 영상 기반 낙동강 부유 물질 농도 계측 기법 개발)

  • Kwon, Siyoon;Seo, Il Won;Beak, Donghae
    • Journal of Korea Water Resources Association
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    • v.54 no.2
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    • pp.121-133
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    • 2021
  • Suspended Solids (SS) generated in rivers are mainly introduced from non-point pollutants or appear naturally in the water body, and are an important water quality factor that may cause long-term water pollution by being deposited. However, the conventional method of measuring the concentration of suspended solids is labor-intensive, and it is difficult to obtain a vast amount of data via point measurement. Therefore, in this study, a model for measuring the concentration of suspended solids based on remote sensing in the Nakdong River was developed using Sentinel-2 data that provides high-resolution multi-spectral satellite images. The proposed model considers the spectral bands and band ratios of various wavelength bands using a machine learning model, Support Vector Regression (SVR), to overcome the limitation of the existing remote sensing-based regression equations. The optimal combination of variables was derived using the Recursive Feature Elimination (RFE) and weight coefficients for each variable of SVR. The results show that the 705nm band belonging to the red-edge wavelength band was estimated as the most important spectral band, and the proposed SVR model produced the most accurate measurement compared with the previous regression equations. By using the RFE, the SVR model developed in this study reduces the variable dependence compared to the existing regression equations based on the single spectral band or band ratio and provides more accurate prediction of spatial distribution of suspended solids concentration.

A MA-plot-based Feature Selection by MRMR in SVM-RFE in RNA-Sequencing Data

  • Kim, Chayoung
    • The Journal of Korean Institute of Information Technology
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    • v.16 no.12
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    • pp.25-30
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    • 2018
  • It is extremely lacking and urgently required that the method of constructing the Gene Regulatory Network (GRN) from RNA-Sequencing data (RNA-Seq) because of Big-Data and GRN in Big-Data has obtained substantial observation as the interactions among relevant featured genes and their regulations. We propose newly the computational comparative feature patterns selection method by implementing a minimum-redundancy maximum-relevancy (MRMR) filter the support vector machine-recursive feature elimination (SVM-RFE) with Intensity-dependent normalization (DEGSEQ) as a preprocessor for emphasizing equal preciseness in RNA-seq in Big-Data. We found out the proposed algorithm might be more scalable and convenient because of all libraries in R package and be more improved in terms of the time consuming in Big-Data and minimum-redundancy maximum-relevancy of a set of feature patterns at the same time.

Combining Support Vector Machine Recursive Feature Elimination and Intensity-dependent Normalization for Gene Selection in RNAseq (RNAseq 빅데이터에서 유전자 선택을 위한 밀집도-의존 정규화 기반의 서포트-벡터 머신 병합법)

  • Kim, Chayoung
    • Journal of Internet Computing and Services
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    • v.18 no.5
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    • pp.47-53
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    • 2017
  • In past few years, high-throughput sequencing, big-data generation, cloud computing, and computational biology are revolutionary. RNA sequencing is emerging as an attractive alternative to DNA microarrays. And the methods for constructing Gene Regulatory Network (GRN) from RNA-Seq are extremely lacking and urgently required. Because GRN has obtained substantial observation from genomics and bioinformatics, an elementary requirement of the GRN has been to maximize distinguishable genes. Despite of RNA sequencing techniques to generate a big amount of data, there are few computational methods to exploit the huge amount of the big data. Therefore, we have suggested a novel gene selection algorithm combining Support Vector Machines and Intensity-dependent normalization, which uses log differential expression ratio in RNAseq. It is an extended variation of support vector machine recursive feature elimination (SVM-RFE) algorithm. This algorithm accomplishes minimum relevancy with subsets of Big-Data, such as NCBI-GEO. The proposed algorithm was compared to the existing one which uses gene expression profiling DNA microarrays. It finds that the proposed algorithm have provided as convenient and quick method than previous because it uses all functions in R package and have more improvement with regard to the classification accuracy based on gene ontology and time consuming in terms of Big-Data. The comparison was performed based on the number of genes selected in RNAseq Big-Data.

An Application of Support Vector Machines to Customer Loyalty Classification of Korean Retailing Company Using R Language

  • Nguyen, Phu-Thien;Lee, Young-Chan
    • The Journal of Information Systems
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    • v.26 no.4
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    • pp.17-37
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    • 2017
  • Purpose Customer Loyalty is the most important factor of customer relationship management (CRM). Especially in retailing industry, where customers have many options of where to spend their money. Classifying loyal customers through customers' data can help retailing companies build more efficient marketing strategies and gain competitive advantages. This study aims to construct classification models of distinguishing the loyal customers within a Korean retailing company using data mining techniques with R language. Design/methodology/approach In order to classify retailing customers, we used combination of support vector machines (SVMs) and other classification algorithms of machine learning (ML) with the support of recursive feature elimination (RFE). In particular, we first clean the dataset to remove outlier and impute the missing value. Then we used a RFE framework for electing most significant predictors. Finally, we construct models with classification algorithms, tune the best parameters and compare the performances among them. Findings The results reveal that ML classification techniques can work well with CRM data in Korean retailing industry. Moreover, customer loyalty is impacted by not only unique factor such as net promoter score but also other purchase habits such as expensive goods preferring or multi-branch visiting and so on. We also prove that with retailing customer's dataset the model constructed by SVMs algorithm has given better performance than others. We expect that the models in this study can be used by other retailing companies to classify their customers, then they can focus on giving services to these potential vip group. We also hope that the results of this ML algorithm using R language could be useful to other researchers for selecting appropriate ML algorithms.

Intelligent System for the Prediction of Heart Diseases Using Machine Learning Algorithms with Anew Mixed Feature Creation (MFC) technique

  • Rawia Elarabi;Abdelrahman Elsharif Karrar;Murtada El-mukashfi El-taher
    • International Journal of Computer Science & Network Security
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    • v.23 no.5
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    • pp.148-162
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    • 2023
  • Classification systems can significantly assist the medical sector by allowing for the precise and quick diagnosis of diseases. As a result, both doctors and patients will save time. A possible way for identifying risk variables is to use machine learning algorithms. Non-surgical technologies, such as machine learning, are trustworthy and effective in categorizing healthy and heart-disease patients, and they save time and effort. The goal of this study is to create a medical intelligent decision support system based on machine learning for the diagnosis of heart disease. We have used a mixed feature creation (MFC) technique to generate new features from the UCI Cleveland Cardiology dataset. We select the most suitable features by using Least Absolute Shrinkage and Selection Operator (LASSO), Recursive Feature Elimination with Random Forest feature selection (RFE-RF) and the best features of both LASSO RFE-RF (BLR) techniques. Cross-validated and grid-search methods are used to optimize the parameters of the estimator used in applying these algorithms. and classifier performance assessment metrics including classification accuracy, specificity, sensitivity, precision, and F1-Score, of each classification model, along with execution time and RMSE the results are presented independently for comparison. Our proposed work finds the best potential outcome across all available prediction models and improves the system's performance, allowing physicians to diagnose heart patients more accurately.

Landslide susceptibility assessment using feature selection-based machine learning models

  • Liu, Lei-Lei;Yang, Can;Wang, Xiao-Mi
    • Geomechanics and Engineering
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    • v.25 no.1
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    • pp.1-16
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    • 2021
  • Machine learning models have been widely used for landslide susceptibility assessment (LSA) in recent years. The large number of inputs or conditioning factors for these models, however, can reduce the computation efficiency and increase the difficulty in collecting data. Feature selection is a good tool to address this problem by selecting the most important features among all factors to reduce the size of the input variables. However, two important questions need to be solved: (1) how do feature selection methods affect the performance of machine learning models? and (2) which feature selection method is the most suitable for a given machine learning model? This paper aims to address these two questions by comparing the predictive performance of 13 feature selection-based machine learning (FS-ML) models and 5 ordinary machine learning models on LSA. First, five commonly used machine learning models (i.e., logistic regression, support vector machine, artificial neural network, Gaussian process and random forest) and six typical feature selection methods in the literature are adopted to constitute the proposed models. Then, fifteen conditioning factors are chosen as input variables and 1,017 landslides are used as recorded data. Next, feature selection methods are used to obtain the importance of the conditioning factors to create feature subsets, based on which 13 FS-ML models are constructed. For each of the machine learning models, a best optimized FS-ML model is selected according to the area under curve value. Finally, five optimal FS-ML models are obtained and applied to the LSA of the studied area. The predictive abilities of the FS-ML models on LSA are verified and compared through the receive operating characteristic curve and statistical indicators such as sensitivity, specificity and accuracy. The results showed that different feature selection methods have different effects on the performance of LSA machine learning models. FS-ML models generally outperform the ordinary machine learning models. The best FS-ML model is the recursive feature elimination (RFE) optimized RF, and RFE is an optimal method for feature selection.

Prediction of Customer Satisfaction Using RFE-SHAP Feature Selection Method (RFE-SHAP을 활용한 온라인 리뷰를 통한 고객 만족도 예측)

  • Olga Chernyaeva;Taeho Hong
    • Journal of Intelligence and Information Systems
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    • v.29 no.4
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    • pp.325-345
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    • 2023
  • In the rapidly evolving domain of e-commerce, our study presents a cohesive approach to enhance customer satisfaction prediction from online reviews, aligning methodological innovation with practical insights. We integrate the RFE-SHAP feature selection with LDA topic modeling to streamline predictive analytics in e-commerce. This integration facilitates the identification of key features-specifically, narrowing down from an initial set of 28 to an optimal subset of 14 features for the Random Forest algorithm. Our approach strategically mitigates the common issue of overfitting in models with an excess of features, leading to an improved accuracy rate of 84% in our Random Forest model. Central to our analysis is the understanding that certain aspects in review content, such as quality, fit, and durability, play a pivotal role in influencing customer satisfaction, especially in the clothing sector. We delve into explaining how each of these selected features impacts customer satisfaction, providing a comprehensive view of the elements most appreciated by customers. Our research makes significant contributions in two key areas. First, it enhances predictive modeling within the realm of e-commerce analytics by introducing a streamlined, feature-centric approach. This refinement in methodology not only bolsters the accuracy of customer satisfaction predictions but also sets a new standard for handling feature selection in predictive models. Second, the study provides actionable insights for e-commerce platforms, especially those in the clothing sector. By highlighting which aspects of customer reviews-like quality, fit, and durability-most influence satisfaction, we offer a strategic direction for businesses to tailor their products and services.

Diagnosis of Alzheimer's Disease using Combined Feature Selection Method

  • Faisal, Fazal Ur Rehman;Khatri, Uttam;Kwon, Goo-Rak
    • Journal of Korea Multimedia Society
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    • v.24 no.5
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    • pp.667-675
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    • 2021
  • The treatments for symptoms of Alzheimer's disease are being provided and for the early diagnosis several researches are undergoing. In this regard, by using T1-weighted images several classification techniques had been proposed to distinguish among AD, MCI, and Healthy Control (HC) patients. In this paper, we also used some traditional Machine Learning (ML) approaches in order to diagnose the AD. This paper consists of an improvised feature selection method which is used to reduce the model complexity which accounted an issue while utilizing the ML approaches. In our presented work, combination of subcortical and cortical features of 308 subjects of ADNI dataset has been used to diagnose AD using structural magnetic resonance (sMRI) images. Three classification experiments were performed: binary classification. i.e., AD vs eMCI, AD vs lMCI, and AD vs HC. Proposed Feature Selection method consist of a combination of Principal Component Analysis and Recursive Feature Elimination method that has been used to reduce the dimension size and selection of best features simultaneously. Experiment on the dataset demonstrated that SVM is best suited for the AD vs lMCI, AD vs HC, and AD vs eMCI classification with the accuracy of 95.83%, 97.83%, and 97.87% respectively.