• 원예과학기술지
• /
• 제34권3호
• /
• pp.453-460
• /
• 2016

The parentage of the horticulturally important pear cultivar 'Niitaka' was confirmed by determining its S-genotypes based on the S-RNase and $PpSFBB^{-{\gamma}}$ genes, and genotyping using simple sequence repeat (SSR) markers. Previous reports suggested that the cultivars 'Amanogawa' and 'Imamuraaki' were the parents of 'Niitaka', although the cultivars 'Chojuro' and 'Shinchu' were also examined as candidate parents, along with two other cultivars. In the present study, the S-genotype of 'Niitaka' was determined to be $S^3S^9$. The $S^9$-RNase of 'Niitaka' was found to be likely inherited from the parent 'Amanogawa' ($S^1S^9$) and the $S^3$-RNase from 'Chojuro' ($S^3S^5$) or 'Shinchu' ($S^3S^5$). Based on the S-genotypes, the cultivar 'Imamuraaki' ($S^1S^6$) had no contribution to the parentage of 'Niitaka' ($S^3S^9$). A total of 67 polymorphic SSR markers were used to further confirm the parentage of 'Niitaka'. Discrepancies were found at several SSR loci between 'Niitaka' and the cultivars 'Imamuraaki' and 'Shinchu', whereas 'Niitaka' inherited alleles from 'Amanogawa' and 'Chojuro' at all SSR loci. Therefore, our findings established that 'Amanogawa' and 'Chojuro' are the parents of pear cultivar 'Niitaka', and not 'Imamuraaki' as previously reported.

• Animal cells and systems
• /
• 제5권3호
• /
• pp.195-198
• /
• 2001

Hepatitis B virus (HBV) polymerase, which possesses the activities of terminal binding, DNA polymerase, reverse transcriptase and RNaseH, has been shown to accomplish viral DNA replication through a pregenomic intermediate. Because the HBV polymerase has not been purified, the expression of HBV polymerase was examined in an E. coli expression system that is under the regulation of arabinose operon. The expressed individual domain containing terminal binding protein, polymerase, or RNaseH turned out to be insoluble. The activities of those domains were not able to be recovered by denaturation and renaturation using urea or guanidine-HCI. The expressed reverse transcriptase containing the polymerase and RNaseH domains became extensively degraded, whereas the proteolysis was reduced in a Ion- mutant. These results indicate that Lon protease proteolyzes the HBV reverse transcriptase expressed in E. coli.

• 대한미생물학회지
• /
• 제35권5_6호
• /
• pp.352-352
• /
• 2000

• Journal of Microbiology and Biotechnology
• /
• 제13권2호
• /
• pp.191-195
• /
• 2003

The in vitro glycosylation of pentapeptide (Arg-Lys-Asp-Val-Tyr; RKDVY) and RNase A was carried out using PNGase F (peptide-N-glycosidase F), and the results were analyzed using MALDI-TOF-MS. Aminated N,N-diretyl chitobiose was used as the sugar in the glycosylation reaction, and the amination yield of N,N'-diacetyl chitobiose was about $60\%$. To reduce the water activity and shift the reaction equilibrium to a reverse reaction, 1,4-dioxane or ethylene glycol was used as the organic solvent in the enzymatic glycosylation. A certain extent of nonenzymatic glycosylaton, known as the Maillard reaction, was also observed, which occurs on an arginine or lysine residue when the length of tie sugar residue is one or two. However, the extent of glycosylation was much higher in the enzymatic reaction, indicating that PNGase F can be effectively used to produce glycopeptides and glycoproteins in vitro.

• International Journal of Industrial Entomology and Biomaterials
• /
• 제37권1호
• /
• pp.15-20
• /
• 2018

Most proteins produced in the endoplasmic reticulum (ER) of eukaryotic cells fold via disulfide formation (oxidative folding). Oxidative folding is catalyzed by protein disulfide isomerase (PDI) and PDI-related ER protein thiol disulfide oxidoreductases (ER oxidoreductases). In yeast and mammals, ER oxidoreductin-1s (ERO1s) supply oxidizing equivalent to the active centers of PDI. We previously identified and characterized the ERO1 of Bombyx mori (bERO1) as a thioredoxin-like protein that shares primary sequence homology with other ERO1s. Here we compare the reactivation of inactivated rRNase and sRNase by bERO1, and show that bERO1 and bPDI cooperatively refold denatured RNase A. This is the first result suggesting that bERO1 plays an essential role in ER quality control through the combined activities of bERO1 and bPDI as a catalyst of protein folding in the ER and sustaining cellular redox homeostasis.

• Animal cells and systems
• /
• 제1권2호
• /
• pp.363-370
• /
• 1997

RNase MRP is a ribonucleoprotein complex with a site-specific endonuclease activity. Its original substrate for cleavage is the small mitochondrial RNA near the mitochondrial DNA replication origin, thus it was proposed to generate the primer for mtDNA replication. Recently, it has been shown to have another substrate in the nucleus, such as pre-S.8S ribosomal RNA in nucleolus. The gene for the RNA component of RNase MRP (MRP RNA) was found to be encoded by the nucleus genome, suggesting an interesting intracellular trafficking of MRP RNA to both mitochondria and nucleolus after transcription in nucleus. In this study, genomic DNA encoding MRP RNA was microinjected into the nucleus of Xenopus oocytes, to analyze promoter regions involved in the transcription. It showed that the proximal sequence element and TATA box are important for basal level transcription; octamer motif and Sp1 binding sites are for elevated level transcription. Most of Xenopus MRP RNA was exported out to the cytoplasm following transcription in the nucleus. Utilizing various hybrid constructs, export of MRP RNA was found to be regulated by the promoter and the 5' half of the coding region of the gene. Interestingly, the transcription in nucleus seems to be coupled to the export of MRP RNA to cytoplasm. Intracellular transport of injected MRP RNA can be easily visualized by whole-mount in situ hybridization following microinjection; it also shows possible intra-nuclear sites for transcription and export of MRP RNA.

• 한국안광학회지
• /
• 제18권3호
• /
• pp.253-260
• /
• 2013

목적: 본 연구에서는 안구 내에 존재하는 효소들의 변성을 차단할 수 있는 안경렌즈의 UV-B 차단율을 밝히고자 하였다. 방법: RNase A와 catalase, superoxide dismutase(SOD)를 1, 3, 6, 24, 96시간 동안 312 nm의 UV-B에 노출시킨 후 아크릴아미드 겔 전기영동법으로 손상 정도를 확인하였다. 또한, 50%, 80%, 95%, 99%의 UV-B 차단율을 가진 안경렌즈의 효소 손상 억제 효과를 알아보았다. 결과: RNase A는 1시간 동안 UV-B의 노출에서 손상이 유발되었으며 1시간 이상 6시간 이하의 노출에 의한 효소의 손상을 막기 위해서는 95%, 24시간 이상 96시간 이하의 노출에는 99% UV-B 차단 렌즈가 효소의 손상을 완벽하게 억제하였다. Catalase는 UV-B에 대한 1시간 이하의 노출에는 영향을 받지 않아 아무런 변성이 발생하지 않았고, 3시간 이상 6시간 이하의 단시간 노출에서는 50% 이상의 UV-B 차단 렌즈, 24시간 이상 96시간 이하의 장시간 노출에는 95% 이상 UV-B 차단 렌즈로 효소의 변성을 완벽하게 억제할 수 있었다. SOD는 6시간 이하의 노출에는 손상되지 않았고, 24시간 정도의 노출에서도 50% 차단 렌즈로 효소 손상을 억제할 수 있었다. 그러나 96시간 UV-B에 노출될 경우는 95% 이상의 차단율을 가진 안경렌즈에 의해 SOD의 손상이 완벽하게 억제되었다. 결론: 본 연구에서는 UV-B 노출에 의한 효소의 변성을 억제하기에 적절한 안경렌즈 차단율은 각 효소마다 상이하였으며 일정 수준 이상의 UV-B 차단율을 가진 경우에만 효과가 있음을 밝혔다.

• BMB Reports
• /
• 제30권2호
• /
• pp.162-165
• /
• 1997

RNA I. a negative controller of ColE1-type plasmid replication, is metabolized by several RNases in Escherichia coli. Two small derivatives of RNA I are accumulated at nonpermissive temperatures in an E. coli strain carrying the rnpA49 mutation, a thermosensitive mutation in the rnpA gene encoding the protein component of RNase P. A primer extension analysis was carried out to compare 5' processing of RNA I in the E. coli rnpA49 cells at both permissive and nonpermissive temperatures. Derivatives of RNA I having different 5' ends were observed in the cells grown at permissive and nonpermissive temperatures. Some of the derivatives may be generated by the cleavage of RNase P.

• BMB Reports
• /
• 제35권2호
• /
• pp.248-250
• /
• 2002

Discrimination between the amplification of mRNA and contaminating genomic DNA is a common problem when performing a reverse transcriptase-polymerase chain reaction (RT-PCR). Even after treatment of the samples with DNAse, it is possible that negative controls (samples in which no reverse transcriptase was added) will give positive results. This indicates that there was amplification of DNA, which was not generated during the reverse transcriptase step. The possibility exists that Taq DNA polymerase acts as a reverse transcriptase, generating cDNA from RNA during the PCR step. In order to test this hypothesis, we incubated samples with a DNAse-free RNAse after the cDNA synthesis. Comparison of the results that were obtained from these samples (incubated with or without DNAse-free RNAse) confirms that the reverse transcriptase activity of Taq DNA polymerase I is a possible source of false positive results when performing RT-PCR from intronless genes. Moreover, we describe here a simple and rapid method to overcome the false positive results that originate by this activity of Taq polymerase.

• 한국안광학회지
• /
• 제13권4호
• /
• pp.43-49
• /
• 2008

목적: 본 연구에서는 UV-A 차단 콘택트렌즈의 UV-A 차단효과를 일반 콘택트렌즈의 효과와 비교하여 보고자 하였다. 방법: RNase A, catalase 및 superoxide dismutase(SOD)를 일반 콘택트렌즈(UV-A 차단율 20%) 및 자외선 차단 콘택트렌즈(UV-A 차단율 85%)로 차단하였을 때의 UV-A에 의한 변성을 아크릴아미드 겔 전기영동법으로 확인하였다. 효소의 용액은 각각 1, 3, 6, 24 및 96시간 동안 365 nm의 UV-A에 노출시켰으며, 콘택트렌즈에 의한 UVA차단 범위는 전안구를 덮는 RGP 렌즈, 소프트 콘택트렌즈, 안경의 크기를 계산하여 각각 50%, 70% 및 100%로 변화를 주었다. 결과: RNase A, catalase 및 SOD의 변성은 UV-A에 노출된 시간이 길어질수록 심하여졌다. 자외선차단 콘택트렌즈의 자외선 차단 효과는 일반 콘택트렌즈와 비교하여 보았을 때 모든 효소에서 차단 효과가 있음을 확인하였다. 콘택트렌즈로 차단된 범위가 줄어들수록 또한 UV-A에 노출된 시간이 길어질수록 자외선 차단 콘택트렌즈의 차단 효과는 감소됨을 알 수 있었다. 결론: 이상의 결과로 미루어 UV-A에 장시간 노출되었을 경우 자외선 차단 콘택트렌즈는 안구 내의 존재하는 효소를 보호하는 효과가 미흡할 것으로 생각되며, 따라서 햇볕 아래에서의 장시간 콘택트렌즈 착용은 충분한 고려를 하여야 할 것으로 제안할 수 있다.