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Trametes villosa Lignin Peroxidase (TvLiP): Genetic and Molecular Characterization

  • Carneiro, Rita Terezinha de Oliveira;Lopes, Maiza Alves;Silva, Marilia Lordelo Cardoso;Santos, Veronica da Silva;Souza, Volnei Brito de;Sousa, Aurizangela Oliveira de;Pirovani, Carlos Priminho;Koblitz, Maria Gabriela Bello;Benevides, Raquel Guimaraes;Goes-Neto, Aristoteles
    • Journal of Microbiology and Biotechnology
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    • v.27 no.1
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    • pp.179-188
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    • 2017
  • White-rot basidiomycetes are the organisms that decompose lignin most efficiently, and Trametes villosa is a promising species for ligninolytic enzyme production. There are several publications on T. villosa applications for lignin degradation regarding the expression and secretion of laccase and manganese peroxidase (MnP) but no reports on the identification and characterization of lignin peroxidase (LiP), a relevant enzyme for the efficient breakdown of lignin. The object of this study was to identify and partially characterize, for the first time, gDNA, mRNA, and the corresponding lignin peroxidase (TvLiP) protein from T. villosa strain CCMB561 from the Brazilian semiarid region. The presence of ligninolytic enzymes produced by this strain grown in inducer media was qualitatively and quantitatively analyzed by spectrophotometry, qPCR, and dye fading using Remazol Brilliant Blue R. The spectrophotometric analysis showed that LiP activity was higher than that of MnP. The greatest LiP expression as measured by qPCR occurred on the $7^{th}$ day, and the ABSA medium (agar, sugarcane bagasse, and ammonium sulfate) was the best that favored LiP expression. The amplification of the TvLiP gene median region covering approximately 50% of the T. versicolor LPGIV gene (87% identity); the presence of Trp199, Leu115, Asp193, Trp199, and Ala203 in the translated amplicon of the T. villosa mRNA; and the close phylogenetic relationship between TvLiP and T. versicolor LiP all indicate that the target enzyme is a lignin peroxidase. Therefore, T. villosa CCMB561 has great potential for use as a LiP, MnP, and Lac producer for industrial applications.

Purification, and Biochemical and Biophysical Characterization of Cellobiohydrolase I from Trichoderma harzianum IOC 3844

  • Colussi, Francieli;Serpa, Viviane;Da Silva Delabona, Priscila;Manzine, Livia Regina;Voltatodio, Maria Luiza;Alves, Renata;Mello, Bruno Luan;Nei, Pereira Jr.;Farinas, Cristiane Sanches;Golubev, Alexander M.;Santos, Maria Auxiliadora Morim;Polikarpov, Igor
    • Journal of Microbiology and Biotechnology
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    • v.21 no.8
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    • pp.808-817
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    • 2011
  • Because of its elevated cellulolytic activity, the filamentous fungus Trichoderma harzianum has a considerable potential in biomass hydrolysis applications. Trichoderma harzianum cellobiohydrolase I (ThCBHI), an exoglucanase, is an important enzyme in the process of cellulose degradation. Here, we report an easy single-step ion-exchange chromatographic method for purification of ThCBHI and its initial biophysical and biochemical characterization. The ThCBHI produced by induction with microcrystalline cellulose under submerged fermentation was purified on DEAE-Sephadex A-50 media and its identity was confirmed by mass spectrometry. The ThCBHI biochemical characterization showed that the protein has a molecular mass of 66 kDa and pI of 5.23. As confirmed by smallangle X-ray scattering (SAXS), both full-length ThCBHI and its catalytic core domain (CCD) obtained by digestion with papain are monomeric in solution. Secondary structure analysis of ThCBHI by circular dichroism revealed ${\alpha}$- helices and ${\beta}$-strands contents in the 28% and 38% range, respectively. The intrinsic fluorescence emission maximum of 337 nm was accounted for as different degrees of exposure of ThCBHI tryptophan residues to water. Moreover, ThCBHI displayed maximum activity at pH 5.0 and temperature of $50^{\circ}C$ with specific activities against Avicel and p-nitrophenyl-${\beta}$-D-cellobioside of 1.25 U/mg and 1.53 U/mg, respectively.

The Structural Relationship among Physical Self-Efficacy, Depression and Ego Integrity (여가스포츠 참여노인의 신체적 자기효능감, 우울감 및 자아통합감의 구조적 관계)

  • Seo, Myung-Geun;Min, Wang-Sik;Kim, Woo-Jin
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.18 no.3
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    • pp.408-417
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    • 2017
  • The objective of this study is to examine the structural relations between physical self-efficacy, depression, and ego-integrity among the elderly (60 years and older) currently participating in leisure sports. In addition, since the variables affecting ego integrity are presented in a multidimensional manner, it is very important to examine the cause and effect of the variables from an integrated perspective. To achieve this objective, 427 senior citizens attending the leisure sports program of a seniors center were assigned as the research subjects. For the structural equation modeling performed in the study, confirmatory factor analysis and reliability analysis were conducted for each variable, and direct, indirect, and total effects were estimated. The model fit is based on TLI, CFI, and RMSEA, and both the fit of the measurement model and the fit of the research model satisfy the criterion. The results of the analysis are as follows. First, in the results of verifying the validity and reliability of the questionnaire, all the variables of physical self-efficacy, depression, and ego-integrity were suitable. Second, the perceived physical ability had positive effects on depression, current life satisfaction, wise life, and attitude toward life, whereas the physical self-expression confidence had positive effects on current life satisfaction and attitude toward life, but negative effects on acceptance of the past life. Lastly, depression had negative effects on current life satisfaction. The results showed that the elderly identified the integrated relationship of physical self - efficacy, depression, and self-integration.

Elementary School Students Who Give Up on Learning Mathematics: Correlations with Non-cognitive Learner Characteristics (초등학생의 수학학습 포기 인식과 정의적 요인 연관성 분석)

  • Ko, Ho Kyoung;Kim, Hyung Won;Kaji, Shizuo;Choi, Suyoung
    • Education of Primary School Mathematics
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    • v.20 no.2
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    • pp.143-151
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    • 2017
  • An increasing number of students are giving up on learning mathematics at all grade levels, including elementary school. The study in this paper considers seven non-cognitive student characteristics to identify which are strongly correlated with giving up on mathematics at the elementary school level. Data were collected with a survey on the non-cognitive domain of mathematics learning that was developed by the Korea Foundation for the Advancement of Science and Creativity in 2015. The data were collected from 3,636 elementary school students in Korea, and we analyzed the data using the statistical computing program R. Of the seven components, efficacy and interest have a strong correlation with students' tendency to profess that they have given up trying to learn mathematics. The findings of the study shed light on which non-cognitive domain areas mathematics teachers need to pay more attention to in order to make their teaching effective. This study further investigated the correlation between responses to each of the 24 survey items and students' claim that they have given up on mathematics. Using the 8 items with the highest correlations, we have developed a shorter, 8-item version of the survey, which will be useful for similar future studies.

Differences of Internode Brix Degree on Different Seeding Date in Sweet Sorghum (단수수의 파종기에 따른 절간별 당도차이)

  • 김상곤;박홍재;정동희;권병선
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.40 no.4
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    • pp.451-459
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    • 1995
  • In order to clarify the growth characteristic and Brix degree at different internodes, four varieties that are M81E 71-1, a Rio, a Sart and a Tamurama were seeded on, Apr. 5, Apr. 15, Apr. 25, May 5 and May 15, respectively. Delayed seeding increased plant hight and the growth pattern of the stem diameter and weight was tapesed off and lighted to upper location. Brix degree of internode was rapidly increased from just after heading date, and was slowly increased by rising upper side till before heading date. Brix degree of middle location(6th internode) was the highest of the stem in after heading date and interior side was the lowest. Brix percentage of 40∼45 days after heading had more than 15% in case of being seeded from Apr. 5 to May 5. Sweet sorghum that was seeded on May 15 was more than 17% in the Brix percentage of 35 days after heading and so the suitable seeding date in sourthern district was suggested on May 5. The plethora of soil moisture by rainfall was made decently lower Brix degree in 130∼140 days after seeding. Among the length and the diameter of internode, and Brix degree had negative correlation, between diameter and weight of internode were significantly positive correlation. But correlation coefficient had been a little bit different by varieties.

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Status and Prospect of Unmanned, Global Ocean Observations Network (글로벌 무인해양관측 네트워크 현황과 전망)

  • Nam, Sunghyun;Kim, Yun-Bae;Park, Jong Jin;Chang, Kyung-Il
    • The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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    • v.19 no.3
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    • pp.202-214
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    • 2014
  • We introduce status and prospect of increasingly utilizing, unmanned, global ocean observing systems, and the global network to integrate, coordinate, and manage the systems. Platforms of the ocean observing system are diversified in order to resolve/monitor the variability occurring at multiple scales in both three-dimensional space and time. Here purpose, development history, and current status of the systems in two kinds - mobile (surface drifter, subsurface float, underwater glider) and fixed platforms (surface and subsurface moorings, bottom mounts), are examined and the increased future uses to produce synergies are envisioned. Simultaneous use of various mobile and fixed platforms is suggested to more effectively design the observing system, with an example of the NSF-funded OOI (Ocean Observations Initiative) program. Efforts are suggested 1) to fill the data gap existing in the deep sea and the Southern Ocean, and toward 2) new global network for oceanic boundary currents, 3) new technologies for existing and new sensors including biogeochemical, acoustic, and optical sensors, 3) data standardization, and 4) sensor calibration and data quality control.

A Latent Class Analysis and Predictors of Chronic Diseases -Based on 2014 Korea National Health and Nutrition Examination Survey- (만성질환에 관한 잠재계층분석과 예측요인 -2014 국민건강영양조사를 중심으로-)

  • Kim, Woo-Jin;Lee, Song-Yi
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.19 no.6
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    • pp.324-333
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    • 2018
  • The aim of this study was to investigate the latent classes and predictors of chronic diseases such as hypertension, dyslipidemia, arthritis, thyroid disease, depression, atopy, allergy, and diabetes. The subjects of this study were Korean citizens who participated in the Korea National Health and Nutrition Examination Survey in 2014. Stratified cluster sampling method was used with a sample size of 7,550. Latent hierarchy analysis was applied to this data. Four classes were identified. Class 1 consisted of participants with hypertension and diabetes. Class 2 consisted of participants with atopy and allergies. Class 3 consisted of participants with dyslipidemia, arthritis, thyroid disease, and depression. Class 4 consisted of participants without any chronic diseases. In comparing Class 1 to Class 4, age, physical activity, self-management, obesity, and presence of high cholesterol were found to be significant. In comparing Class 2 to Class 4, gender, age, and education level were significant. When Class 3 was compared to Class 4, gender, age, pain and discomfort, as well as high cholesterol were found to be significant. Diabetes and hypertension should be treated as comorbid conditions, applying integrated treatments involving effective drug treatment, diet, and physical activity programs. Atopy was found to be strongly correlated with allergies. Thyroid disease was found to coexist with dyslipidemia and arthritis, along with having a strong correlation to depression. Age-appropriate preventive measures can help reduce the risk of chronic diseases.

Carcass characteristics of lambs fed spineless cactus as a replacement for sugarcane

  • de Oliveira, Juliana Paula Felipe;Ferreira, Marcelo de Andrade;Alves, Adryanne Marjorie Souza Vitor;de Melo, Ana Caroline Cerqueira;de Andrade, Ida Barbosa;Urbano, Stela Antas;Suassuna, Juraci Marcos Alves;de Barros, Leonardo Jose Assis;Melo, Tobias Tobit de Barros
    • Asian-Australasian Journal of Animal Sciences
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    • v.31 no.4
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    • pp.529-536
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    • 2018
  • Objective: Fresh sugarcane has been a new roughage source for ruminant's in semiarid regions, a function of the decline of sugar and alcohol industry in recent years. However, there is little data published regarding lambs fed sugarcane associated with spineless cactus. This study evaluated the effect of sugarcane replacement with spineless cactus (0%, 33%, 66%, and 100%) in the diet of Santa $In\hat{e}s$ lambs on carcass characteristics. Methods: Thirty-six non-castrated Santa Ines lambs at four months of age and an initial body weight of $22{\pm}2.3kg$ were assigned in a randomized block design and slaughtered after 70 days of confinement. The effects of spineless cactus as a replacement for sugarcane in the diet of the lambs on the carcass characteristics, commercial cut weight and yield, leg tissue composition, and carcass measurements were studied. Results: The study revealed quadratic behavior in slaughter body weight, and hot and cold carcass weight, with maximum values of 38.60, 18.60, and 18.11 kg and replacement levels of 40.18%, 44.42%, and 43.14%, respectively. The cold carcass yield presented an increasing linear behavior. The compactness index of carcass and leg presented a quadratic effect, with estimated maximal values of 0.28 and 0.57 kg/cm and replacement levels of 43.37% and 45.5%, respectively. The weights of commercial cuts of leg, loin, shoulder, and breast showed quadratic behavior, with maximum values of 2.79, 0.852, 1.46, and 1.30 kg and replacement levels of 49.5, 45.32, 39.0, and 40.7, respectively. For tissue composition, quadratic behavior was verified for leg weight, subcutaneous fat, and total fat. Conclusion: The replacement of sugarcane by spineless cactus at level 44% is recommended for finishing lambs considering that this level improved most of the carcass characteristics, weights, and yields of commercial cuts and leg tissue composition.

An Overview of Operations and Applications of HF Ocean Radar Networks in the Korean Coast (한국연안 고주파 해양레이더망 운영과 활용 개관)

  • Kim, Ho-Kyun;Kim, Jung-Hoon;Son, Young-Tae;Lee, Sang-Ho
    • Korean Journal of Remote Sensing
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    • v.34 no.2_2
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    • pp.351-375
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    • 2018
  • This paper aims to i) introduce the characteristics of HF ocean radar and the major results and information produced by the radar networks in the Korean coasts to the readers, ii) make an up-to-date inventory of the existing radar systems, and iii) share the information related to the radar operating skill and the ocean current data application. The number of ocean radars has been showing a significant growth over the past 20 years, currently deploying more than 44 radars in the Korean coasts. Most of radars are in operation at the present time for the purposes related to the marine safety, tidal current forecast and understanding of ocean current dynamics, mainly depending on the mission of each organization operating radar network. We hope this overview paper may help expand the applicability of the ocean radar to fisheries, leisure activity on the sea, ocean resource management, oil spill response, coastal environment restoration, search and rescue, and vessel detection etc., beyond the level of understanding of tidal and ocean current dynamics. Additionally we hope this paper contributes further to the surveillance activity on our ocean territory by founding a national ocean radar network frame and to the domestic development of ocean radar system including signal processing technology.

The Present of Convention on Biological Diversity Maritime Agenda (해양관련 생물다양성협약 의제 소개)

  • Back, Jinwook;Lee, Kanghyun
    • Korean Journal of Environmental Biology
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    • v.32 no.4
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    • pp.397-402
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    • 2014
  • In June 1992, Convention on Biological Diversity (CBD) was concluded by 158 countries in Rio de Janeiro. And now, 194 member nations are participating in discussions for their own profit. Recently, Nagoya Protocol regarding Access to genetic resources and Benefit-Sharing (ABS) was approved and took effect from October $12^{th}$, 2014. Thus, it is important to understand the impact of CBD and ABS functioning on researchers studying marine biodiversity. Until now, in the previous Conference of the parties to the Convention on Biological Diversity, the interest towards researching marine and marine living resources was relatively low, and accordingly, the discussions regarding marine and marine living resources were delayed. However, in the $12^{th}$ Pyeongchang Conference of the Parties to the Convention on Biological Diversity, the arguments concerning Ecologically or Biologically Significant marine Areas (EBSA) and the other marine related issues were discussed. Although, South Korea has not yet officially joined Nagoya Protocol, however the consultations in regard to Prior and Informed Consent (PIC), Mutually Agreed Terms (MAT) and Global Multilateral Benefit-Sharing Mechanism (GMBSM) were discussed. We belive that as a possessing nation of biological resources, South Korean government authorities should revise their management systems protocol and regulations concerning domestic biological resources, in order to strengthen the information system and help academia and industry to utilize the biological resources abroad easily and effectively.