• Bioinformatics and Biosystems
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• 제1권1호
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• pp.82-87
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• 2006

현재 가장 많이 사용되는 단백질 구조 예측 방법은 비교 모델링 (comparative modeling) 방법이다. 비교 모델링 방법에서의 정확도를 높이기 위해서는 alignment의 정확도 역시 매우 필수적으로 필요하다. 비교 모델링 과정 중의 fold-recognition 단계에서 alignment의 정확도에 의해 template을 고르는 방법은 단지 가장 비슷한 template을 선택하는 방법에 비해 주목을 받지 못하고 있다. 최근에는 두 가지의 alignment에 사이의 shift 정보를 바탕으로 한 shift score라는 수치가 alignment의 성능을 표현하기 위해서 개발되었다. 우리는 더 정확한 구조 예측의 첫걸음이 될 수 있는 shift score를 예측하는 방법을 개발하였다. Shift score를 예측하기 위해 support vector regression (SVR)이 사용되었다. 사전에 구축된 라이브러리 안의 길이가 n 인 template과 구조를 알고 싶은 query 단백질 사이의 alignment는 n+2 차원의 input 벡터로 변환된다. Structural alignment가 가장 좋은 alignment로 가정되었고 SVR은 query 단백질과 template 단백질의 structural alignment과 profile-profile alignment 사이의 shift score를 예측하도록 training 되었다. 예측 정확도는 Pearson 상관계수로 측정되었다. Training 된 SVR은 실제의 shift score와 예측된 shift score 사이에 0.80의 Pearson 상관계수를 갖는 정도로 예측하였다.

• 한국수산과학회지
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• 제47권3호
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• pp.211-219
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• 2014

To confirm the food quality and storage stability of commercial Korean kamaboko, we experimented with the composition and textural properties using various surimis and kamaboko products. We also investigated changes in protein digestibility and lipid oxidation of vacuum packed products under chilled storage at $4{\pm}1^{\circ}C$. Among the fish meatbased surimi, vegetable mixed surimi had the lowest protein content (23.73 %), as compared to other surimi (51.9-73.6%). Siginificant (P<0.05) differences in protein, lipid content and degree of fat oxidation were noted between the fried kamaboko products of three companies. Adhesiveness, springiness, cohesiveness, gumminess, chewiness and resilience were similar in all samples, but there were notable differences in hardness and fractuability between samples. In vitro protein digestibility and trypsin indigestible substrate (TIS) were not inversely proportional in fried kamaboko products. The protein digestibility (80.30%) of steamed vegetable mixed fried kamaboko was lower than that of other fried samples (84.9-86.2%). Computed protein efficiency ratio (C-PER) of companies A and C's fried kamaboko was 2.6 but company B's was 1.9. There was no noticeable change in thiobarbituric acid reactive substances (TBARs) or protein digestibility for any of the vacuum packed fried kamaboko during 30 days of chilled storage.

• Asian-Australasian Journal of Animal Sciences
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• 제23권5호
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• pp.598-606
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• 2010

This study investigated the nutritional quality of soybean meal (SBM) fermented by Aspergillus ($FSBM_A$) and/or followed by Lactobacillus fermentation ($FSBM_{A+L}$). Both fermented products significantly improved protein utilization of SBM with higher trichloroacetic acid (TCA) soluble true protein content, in vitro protein digestibility and available lysine content, especially in $FSBM_{A+L}$. Moreover, $FSBM_{A+L}$ produced a huge amount of lactic acid resulting in lower pH as compared to the unfermented SBM or soybean protein concentrate (SPC) (p<0.05). $FSBM_A$ and $FSBM_{A+L}$ raised 4.14% and 9.04% of essential amino acids and 5.38% and 9.37% of non-essential amino acids content, respectively. The ${\alpha}$-galactoside linkage oligosaccharides such as raffinose and stachyose content in $FSBM_A$ and $FSBM_{A+L}$ decreased significantly. The results of soluble protein fractions and distribution showed that the ratio of small protein fractions (<16 kDa) were 42.6% and 63.5% for $FSBM_A$ and $FSBM_{A+L}$, respectively, as compared to 7.2% for SBM, where the ratio of large size fractions (>55 kDa, mainly ${\beta}$-conglycinin) decreased to 9.4%, 5.4% and increased to 38.8%, respectively. There were no significant differences in ileal protein digestibility regardless of treatment groups. SPC inclusion in the diet showed a better protein digestibility than the SBM diet. In summary, soybean meal fermented by Aspergillus, especially through the consequent Lactobacillus fermentation, could increase the nutritional value as compared with unfermented SBM and is compatible with SPC.

• 한국작물학회지
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• 제39권3호
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• pp.278-284
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• 1994

콩단백질의 황 아미노산함량은 가축 영양학상 중요한 위치를 차지하기 때문에 신계통이 가져야만 할 필수조건일지도 모른다. 콩 계통간에 저장단백질의 유전적변이가 존재한다면 이는 기존의 육종방법을 통하여 콩의 종자단백질 구성성분을 유전적으로 변경하여 품질을 개량할 수 있는 가능성을 시사하고 있다. 본 연구는 여러 문헌에 보고된 콩종자 저장단백질의 돌연변이 계통들을 선별하여 콩단백질의 품질을 향상시키기 위한 육종 재료로서의 가능성을 평가하기 위하여 실행되었다. 수집된 돌연변이 계통들은 저장단백질의 또 다른 특성을 나타내었다. 그 돌연변이 계통들 중에서 Keburi(P.I.417016), Keburi(P.I.506817), P.I.154608-1 등은 황 아미노산 함량이 상대적으로 다른 돌연변이 계통보다 높은 1.9, 2.1, 1.8%를 나타내었으며, 이는 7S 단백질인 ${\alpha}$ ', ${\alpha}$ , ${\beta}$단백질 함량이 상대적으로 낮기 때문인 것으로 나타났다. 그러므로 그 돌연변이 계통들 중에서 Keburi(P.I.417016), Keburi(P.I.506817), P.I.54608-1 등은 황 아미노산 함량을 향상시키기 위한 중요한 육종재료로, 그 외 돌연변이 계통들은 다른 용도의 육종 재료로 이용할 수 있을 것으로 추측된다.

• 한국환경과학회지
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• 제5권5호
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• pp.643-656
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• 1996

백색광 및 여러 파장의 광선 (적색, 청색, 그리고 녹색광)이 녹화중인 귀리 유식물의 엽록소 함량 변화 및 엽록소-단백질 복합체 형성에 미치는 효과를 조사하였다. 높은 광도의 백색광은 낮은 광도의 백색광에 비하여 귀리 유식물의 전체 엽록소 함량 및 엽록소 a/b 비율의 증가에 효과적이었다. 또한 엽록소-단백질 복합체의 형성에 있어서 높은 광도의 백색광은 낮은 광도의 백색광에 비하여 PSI, CCI, 및 CCII의 형성을 효과적으로 촉진하였다. 한편, 여러 파장의 광선하에서 생장한 귀리 유식물은 유사한 광도를 가진 백색 광하에서 생장한 유식물에 비하여 엽록소의 축적 및 엽록소 a/b 비율에 큰 영향을 받지 않았다. 적색광은 귀리 유식물의 엽록소-단백질 복합체의 형성에 있어서 백색광에 비하여 LHCII trimer형성에 효과적이지 못하였으나, 청색광은 백색광과 유사한 효과를 나타내었다. 청색광과 적색광을 비교하였을 때, 청색광은 적색광보다 LHCII monomer의 형성에 효과적이었다. 이와 같은 결과에서 엽록체의 발달과정동안 광도의 효과가 광질의 효과보다 엽록소 축적 및 엽록소 a/b비율의 증가에 중요한 인자로 작용하며, 여러 파장의 광선은 엽록체-단백질 복합체의 조성을 조절하는데 중요한 인자인 것으로 사료된다.

• Preventive Nutrition and Food Science
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• 제3권3호
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• pp.241-247
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• 1998

Fish extracts were processed at high temperature (136.7 ~14$0^{\circ}C$) for possible use as functional food ingredients. Raw fish meats and those hydrothermal extracts were compared with respect to in vitro and in vivo protein qualities. 95% of fat inraw meats was reduced in extracts but there were not remarkable changes in other macronutrients in freeze-dried extracts. Most of essential amino acids were decreased significantly but two times more proline and glycine were detected in extracts. High temperature cooking resulted 2.1 ~3.7 times of higher total free amino acid content infish extracts compared iwth raw meat, and taurine and glutamic acid were increased especially. Severe protein damages were occurred when invitro protein quality indices such as availblae lysine, hydrophilic browing, trypsin inhibitor formation and in vitro protein digestibility were measured on fish extracts. In vivo protein qualities were also strongly influenced by high temperature ; however rat-body-weight gain was nearly zero during PER assay, and rat PER or NPR of fish extracts were significantly lower (p<0.001) than those of cotnrol (ANRC casein) and original raw fish meats.

• Asian-Australasian Journal of Animal Sciences
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• 제4권4호
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• pp.383-393
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• 1991

The present study was carried out to investigate the effect of cimaterol on growth performance, carcass quality and cellular functional activity of broilers as affected by the various protein and energy levels. In starter period (0-21 days) all chicks were fed the basal diet which contained approximately 23 % crude protein and 3200 kcal of metabolizable energy per kg of diet. The cimaterol was added during 22-49 days and during the period of 8th week the cimaterol was withdrawn. In finisher period (22-49 days), a $2{\times}2{\times}3$ factorial arrangement consisting of 2 levels of cimaterol (0 mg/kg, 0.25 mg/kg), 2 levels of protein (19%, 17%) and 3 levels of energy (3200, 2900, 2600 kcal/kg) was used. In the finisher period, the body weight gain and feed efficiency was improved by the supplementation of cimaterol. The high protein and high energy level with supplementation of cimaterol had showed the highest body weight gain and feed efficiency, without significant difference. The administration of cimaterol had no effects on percentage of abdominal fat content, giblet and neck. Eventhough the difference was not significant (p>0.05), carcass yield was improved slightly by the administration of cimaterol. The effect of cimaterol on carcass composition was clearly demonstrated that protein content of broilers was not increased (p>0.05) but fat content decreased significantly (p<0.05). The ultilization of nutrients in experimental diets was not significantly affected by feeding cimaterol compared to control group. The results of in vitro studies with liver and adipose tissue showed that cimaterol increased the lipolytic activities at 19% protein level whereas at 17% protein level this effect was variable. Lipogenic activities in liver and adipose tissue were not affected with the administration of cimaterol but the activities increased as energy decreased, particularly in liver tissue. In cell studies with acinar culture of liver tissues, cimaterol had no effect on protein synthetic activity but the parameter was increased at higher level of dietary protein and energy. Protein secretion in liver was increased by the supplementation of cimaterol. In addition, at high protein level the protein secretion was increased and has shown the highest values at medium energy level.

• Asian-Australasian Journal of Animal Sciences
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• 제15권2호
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• pp.254-265
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• 2002

Soybean meal (SBM) is a major protein source in poultry feeds and one of the best quality ingredients because of the relatively high protein content, good amino acid profile and bioavailability. But soybean meal quality is largely dependent on the processing technology and origins. In this experiment, effects of three different soybean meals were evaluated in layer (experiment 1) and broiler (experiment 2). Soybean meal sources used in the experiments were the US-originated dehulled soybean meal (USDHSBM), India-originated non-dehulled soybean meal (India SBM) and Brazil-originated non-dehulled soybean meal (Brazil SBM). Experiment 1 was conducted during growing and laying periods and evaluated the interactive effects of soybean meal sources according to feeding periods on growth performance and egg quality. Experiment 2 was conducted during growing period (day 1-35) and finishing period (day 35-42). The growth performance was measured for the same periods and any possible interaction between soybean meal origins and crude protein levels was also studied. In experiment 1, chicks fed India SBM utilized feed more efficiently (p<0.05) than those fed Brazil SBM from day 29 to day 42. The body weights of layers during the laying period had no relation to egg production. But egg weights were significantly heavier in all the USDHSBM fed groups than other groups (p<0.001) and depended on feed protein source during growing period (p<0.001). The average egg weight of the USDHSBM fed group scored the highest value (65.4 g), followed by the Brazil SBM fed group (62.1 g) and India SBM fed group (62.1 g). There was an effect of interaction between origins of soybean meal fed group in growing and laying period on eggshell color (p<0.01). Eggshell was significantly stronger in the USDHSBM fed (for growing period) groups than other groups (p<0.05) on $31^{st}$ week. Haugh's unit (HU), albumin index and yolk index of the USDHSBM fed group in growing stage were significantly superior (p<0.001) to other groups. In experiment 2, for the 7-week, chicks on the India SBM group gained less (p<0.001) weight than other groups. While daily gain of India SBM chicks was not affected by dietary crude protein level, those of the USDHSBM and Brazil SBM chicks were linearly increased as dietary crude protein level increased from 18% to 20%. The gain per feed ratio of the USDHSBM group was the highest (0.585), followed by the Brazil SBM group (0.568) and India SBM group (0.550) (p<0.01). Therefore, in this experiment, the use of USDHSBM with excellent protein quality and amino acid digestibility could be of advantage to the economic production of layer and broiler.

• Animal Bioscience
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• 제35권10호
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• pp.1556-1565
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• 2022

Objective: Tan lambs (n = 36, 3 mo old, 19.1±0.53 kg) were used to assess effects of dietary guanidinoacetic acid (GAA) and rumen-protected methionine (RPM) on growth performance, carcass traits, meat quality, and serum parameters. Methods: Lambs were randomly assigned to three treatment groups, with 6 pens per group and 2 lambs per pen. Dietary treatments were: basal diet alone (I); basal diet supplemented with 0.08% GAA+0.06% RPM (II); and basal diet supplemented with 0.08% GAA+0.08% RPM (III). Diets were provided three times a day for 90 d. Intake per pen was recorded daily and individual lamb body weight (BW) was measured monthly. Carcass traits were measured after slaughter and meat quality at the end of the experiment, blood samples were taken on a subgroup of lambs for analysis of indicators mostly related to protein metabolism. Results: Final BW and average daily gain for the first and second month, and for the entire experiment were greater in Treatment II compared to Treatment I (p<0.05), whereas feed to gain ratio was lower (p<0.05). Treatment II had the optimal dressing percentage and net meat weight proportion, as well as crude protein and intramuscular fat concentrations in muscles. Treatment II improved meat quality, as indicated by the greater water holding capacity, pH after 45 min and 48 h, and lower shear force and cooking loss. Dietary supplementation of GAA and RPM also increased the meat color a^* and b^* values at 24 h. Finally, Treatment II increased total protein, and serum concentrations of albumin and creatinine, but decreased serum urea nitrogen concentrations, indicating improved protein efficiency. Conclusion: In this study, 0.08% GAA+0.06% RPM supplementation improved growth performance and meat quality of Tan lambs.

• Food Science and Biotechnology
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• 제17권1호
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• pp.66-71
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• 2008

A total of 284 milled rice (MR) marketed in Korea were analyzed for grading characteristics (head rice, broken kernels, chalky kernels, and damaged kernels%), color characteristics (L-, a-, b-values, and whiteness), protein content (%), and the cooked rice (CR) sensory quality to investigate the key characteristics affecting the overall sensory quality of rice marketed in Korea. Relatively high correlation with the overall sensory quality of the CR was found in color characteristics such b-value of the CR (r=-0.779) and MR (r=-0.545), the a-value of the CR (r=0.513), and the whiteness (r=0.298) of the MR, compared to protein (r=-0.150), and the moisture (r=0.158) contents of the MR and the percentage of head rice (r=0.195). Partial least squares (PLS) regression of the CR b-value with various characteristics of the MR showed that CR b-value was increased with MR b-value effectively, followed by protein content, damaged kernels, chalky kernels, and colored kernels of MR while it was decreased with whiteness and moisture content for the MR.