• Title/Summary/Keyword: Plot

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Applications of Parallel Coordinate Plots for Visualizing Gene Expression Data (평행좌표 플롯을 활용한 유전자발현 자료의 시각화)

  • Park, Mi-Ra;Kwak, Il-Youp;Huh, Myung-Hoe
    • The Korean Journal of Applied Statistics
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    • v.21 no.6
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    • pp.911-921
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    • 2008
  • Visualization of the gene expression data on a low-dimensional graph is helpful in uncovering biological information contained in the data. In this study, we focus on two modified versions of the parallel coordinate plot. First one is the ePCP(enhanced parallel coordinate plot) which shows "near smooth" connecting curves between axes spaced proportionately to the proximity of re-ordered variables. Second one is APCP(Andrews' type parallel coordinate plot) which is obtained by rotating Andrews' plot that has a form of the parallel coordinate plot. Visualization procdures using ePCP and APCP are given for the lymphoma data case.

Assessment of Drainage Discharge and Nitrate-Nitrogen Loads According to Subsurface Drainage Design in Corn Cultivated Agricultural Land in Illinois, USA (미국 일리노이주 옥수수 재배 농경지 내 암거배수 시설 설계에 따른 배수량 및 질산성질소 배출 평가)

  • Hwang, Soonho;Jeong, Hanseok;Bhattarai, Rabin
    • Journal of The Korean Society of Agricultural Engineers
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    • v.66 no.3
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    • pp.15-23
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    • 2024
  • Subsurface drainage improves crop productivity in poorly drained soils but may also substantially contribute impairment of surface water quality due to excess leaching losses of nutrients like Nitrate-Nitrogen (NO3-N). This research presents preliminary findings from a 3-years tile depth and spacing study in Illinois state that includes three drain spacings implemented in 2 plots. We found that the plot with the narrower subsurface drainage (Case 1) exported more drainage water compared to the plot with the narrower subsurface drainage system (Case 2). The total drainage water from Case 1 plot showed 57% more compared to Case 2 plot. Whereas we observed that the plot with narrower drain spacing (Case 1) exported only 9% more NO3-N leaching losses compared to the wider plot (Case 2). The average corn yield was observed higher in plot Case 1 compared to Case 2. Especially, we observed about 7% higher corn yield in plot Case 1 compared to Case 2 plot in the relatively dried year (2022). The preliminary findings for this study suggest that subsurface drainage systems can be optimized to reduce nutrient losses while improving the crop productivity.

Changes of soil characteristics, rice growth and lodging traits by different fertilization and drainage system in paddy soil (논 토양에서 배수 및 시비조건에 따른 토양특성, 생육 및 도복 관련 형질의 변화)

  • Jeon, Weon-Tai;Park, Chang-Young;Park, Ki-Do;Cho, Young-Son;Lee, Jeom-Sig;Lee, Dong-Chang
    • Korean Journal of Soil Science and Fertilizer
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    • v.35 no.3
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    • pp.153-161
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    • 2002
  • The installation of subsurface drainage equipment is required for generalized use of paddy field and to improve soil productivity. The internal drainage of paddy field has improved root condition from the increasing of oxygen supply and removing noxious elements. This experiment was carried out to determine the effects of fertilization and drainage system on soil characteristic, growth and lodging trait of rice in paddy soil. A subsurface drainage system was installed a depth of 0.8m. Three fertilizer treatments were applied : 1) Conventional fertilized plot, 2) Controlled-release fertilized plot, 3) No-fertilized plot. In conventional plot, 110 kg N (as urea 46%), 45 kg P (as fused phosphate 20%) and 57 kg K (as potassium chloride 60%) per hectare fertilizers were applied. Controlled-release fertilizer was applied by 70% of N compared to the conventional plot. During the rice cropping, the water depth decrease was two times higher in subsurface drainage(SD) plot than non-drained(ND) plot. After harvesting of rice, the bulk density of sub-soil(10-20cm depth) was lower in SD plot than ND plot. After the experiment, the surface soil pH was high at SD plot but sub-soil was high at ND plot. Organic matter content was higher in all soil layer for SD plot than fro ND plot. Available $P_2O_5$ was not different between SD and ND plot for surface soil, but was high for SD plot for sub soil. The $NH_4{^+}-N$ content of soil, shoot dry matter, total nitrogen and $K_2O$ of rice plant were greater after panicle formation stage in SD plot. Total nitrogen content, $P_2O_5$ and $K_2O$ of rice root were high in SD plot after heading. Though the gravity center and 3rd internode length were greater, pulling force of rice root was higher in SD plot than ND plot. Rice yield in SD plot were low at conventional and controlled-release fertilized plot because of the greater field lodging, but yield in SD plot was high at no-fertilized plot. This study indicates that the fertilization level should be decrease on subsurface drainage system for rice cropping.

Studies on the Effects of Variation Methods of Rotation Irrigation Systems Affecting on the Growth, Yield of Rice Plant and its Optimum Facilities (윤환관개의 방법의 차이가 수도생육 및 수량에 미치는 영향과 그 적정시설에 관한 연구)

  • 이창구
    • Journal of the Korean Professional Engineers Association
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    • v.2 no.5
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    • pp.4-18
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    • 1969
  • This experiment was conducted, making use of the "NONG-RlM 6", a recommended variety of rice for year of 1968. Main purposes of the experiment are to explore possibilities of: a) ways and means of saving irrigation water and, b) overcoming drought at the same time so that an increased yield in rice could be resulted in. Specifically, it was tried to determine the effects of the circulation irrigation method combined with differentiated thickness of lining upon the growth and yield of rice. Some of the major findings are summarized in the following. 1) The different thicknesses show a significant relationship with the weight of 1,000 grains. In the case of 9cm-lined plot, the grain weight is 23.5 grams, the heaviest. Next in order are 3cm-lined plot, 6cm-lined plot, control plot, and wheat straw lined-plot. 2) In rice yield, it is found that there is a considerably moderate significant relationship with both the different thickness of lining and the number of irrigation, as shown in the table. 3) There is little or no difference among different plots in terms of a) physical and chemical properties of solid, b) quality of irrigation water, c) climatic conditions, and rainfalls. 4) It is found that there is a significant relationship between differences in the method of rotation irrigation and the number of ears per hill. The plot irrigated at an interval of 7 days shows 17.4 ears and the plot irrigated at an interval of 6 days, 16.3. 5) In vinyl-treated plots, it is shown that both yield and component element are greatest in the case of the plot with hole of 3$cm/m^2$. Next in order are; the plot with a hole of 2$cm/m^2$; the plot with a hole of 1$cm/m^2$. In the case of the plot with no hole, it is found that both yield and component elements are decreased as compared to the control plot. 6) The irrigation water requirement is measured for the actual irrigation days of 72 which are the number subtracted the days of rainfall of 30 from the total irrigation days of 102. It is found that the irrigation water requirement for the un control plot is 1,590 mm, as compared to 876 mm (44.9% saved) for the 9cm-lined plot, 959mm(39.7% saved) for the 6cm-lined plot, 1,010mm (36% saved) for the 3cm-lined plot, and 1,082mm (32% saved) for the wheat straw lined plot. In the case of the rotation irrigation method, it is found that the water requirement for the plot irrigated at an interval of 8 days is 538mm (65.3% saved), as compared to 617mm (61.1% saved) for the plot irrigated at an interval of 7 days, 672mm (57.7% saved) for the plot irrigated at an interval of 6 days, 746mm (53.0% saved) for the plot irrigated at an interval of 5 days, 890mm (44.0% saved) for to plot irrigated at an interval of 4 days, and 975mm (38.6% saved) for the plot irrigated at an interval of 3 days. 7) The rate of evapo-transpiration is found 2.8 around the end of the month of July, as compared to 2.6 at the begining of August, 3.4 around the end of August, and 2.6 at the begining of September. 8) It is found that the saturaton quantity of 30 mm per day is decreased to 20mm per day through the use of vinyl covering. 9) The husking rate shows 75 per cent which is considered better.

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Effects of Slow-Release Nitrogen Fertilizers, Latex coated urea and Meister 10, on Direct Seeded Rice in Flood Soil (벼 담수직파재배시 완효성질소비료의 시용 효과)

  • Jang, Myung-Hwan;Back, Jun-Ho;Lee, Seung-Ho;Lee, Sang-Jo;Lim, Jun-Young;Kim, Bok-Jin
    • Korean Journal of Soil Science and Fertilizer
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    • v.34 no.6
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    • pp.401-406
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    • 2001
  • This study was conducted to find out the effect of slow-release nitrogen fertilizer, such as latex coated urea(LCU) and Meister10(MS10) on direct seeded rice in flooded soil(FS). Junghwabyeo, and early maturity rice cultivar grown on the plots which were treated with None-nitrogen, urea, LCU and MS10 plot. Growth characteristic, yield and yield components were investigated. Nitrogen uptake-efficiency and physico-chemical properties of soil before-after experiment were analyzed. Plant height and number of tillers $m^{-2}$ in LCU and MS10 plot at early grow stages were higher than those of Urea plot. MS10 and LCU plot showed similar tendency on the plant height but MS10 plot was higher than LCU plot on the number of tillers $m^{-2}$. The number of seedling $m^{-2}$ were no significant differences among None-N, urea, and MS10 plot. Heading date and leaf color were no significant differences among None-N, urea, and MS10 plot. Culm length in LCU and Ms10 plot were longer compared with urea plot, but panicle length were similar among with Urea, LCU and MS10 plot. Number of panicles $m^{-2}$ was highest in MS10 plot and it was similar between LCU and Urea plot. Yield were greater in order of Ms10 > LCU > Urea plot. Nitrogen uptake and nitrogen efficiency were greater in order of MS10 > LCU > urea plot. After the experiment, total content of nitrogen in soil was not changed at all treatments, but pH, P and K of soil were lower than that of before experiment at all treatments.

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Plot Size for Investigating Forest Community Structure(III) -Adequate Plot Area of Shrub Stratum in a Pinus densiflora Forest at Chuwangsan Area- (삼림군집구조 조사를 위한 조사구 크기에 관한 연구(III) -주왕산지역 소나무림의 관목층 적정 조사구 면적-)

  • 박인협;문광선
    • Korean Journal of Environment and Ecology
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    • v.8 no.2
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    • pp.150-153
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    • 1995
  • A Pinus densiflora forest in Chuwangsan was studied to determine the adequate plot area of shrub stratum for investigating forest community structure. Nineteen nested plots were set up in the studied forest, and species-area curve and performance curve were established. According to species-area curve, the minimum plot area where a given percentage increase in plot area produced less than the same percentage increase in number of species was 900$m^2$. The minimum plot area where a given percentage increase in plot area produced less than the half of the percent-age increase in number of species was 1,500$m^2$. According to performance curve of the importance values of the major species, the minimum plot area where the importance value of the major species was distinguished from each other was 1,400$m^2$. According to performance curve of species diversity, the minimum plot area was 750-1,500$m^2$. Similarity indices between plot area above 900$m^2$ and total plot area were more than 90% and similarity indices between plot area above 625$m^2$ and total plot area were more than 85%. It may be given as a conclusion that minimum plot area was about 1,500$m^2$ in case of requiring more accuracy.

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Study on the effects of crop-yields under subsurface drainage system in the water-logging paddy fields (저수지에 있어서 암거배수 방법이 작물수량에 미치는 효과에 관한 시험연구)

  • 서승덕;김조웅
    • Magazine of the Korean Society of Agricultural Engineers
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    • v.19 no.3
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    • pp.4449-4461
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    • 1977
  • Subsurface Drinage Problems arise from many causes. Flatland tends to be poorly drained, particularly where the subsoil permeability is low. There are many wet areas, however, where there is no evident connection between the area of seepage, or a high water table, and the topography of the site. High water tables may occur where the soil is either slowly or rapidly permeable, where the climate is either humid or arid, and where the land is either sloping or flat. This study is to bring light on subjects relating to increasing yield of crop and possibility of double crops a year in water logging paddy fields. Obtained results are briefly summarized as follows: 1. Effect of crop-yield in the plot A resulted 20.2 percent higher than the ordinary plot with yield of brown rice. 2. Possibility of double-crops a year is investigated. Effect of the barley production of the test plot resulted 168.2 percent higher than the other uplands near test plot with the yield of 1977 production and it is 3.8 percent higher compare with the yearly yields. 3. Decreasing depth of water level was measured 23.9mm per day and 14.3mm per day at the test plot and ordinary plot respectively and the amounts of subsurface drainage measured 30mm to 35mm per day. It is required that the relief well should be controled carefully and adequately. 4. Mean depth of ground water levl was measured 0.4∼0.5m regardless the width of corrugated pipe. It is significantly lowere than the ordinary plot(0.15∼0.20m) 5. The ground temperature of the test plot is higher 1 degree of centigarade or more than the ordinary plot and soil moisture content of the ordinary plot is higher 12.4∼27.8 percent than the plot reversely. There should be a relationship between rising of ground temperature and soil moisture.

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A Study on the Dry Matter Production and Growth Analysis of Zoysia japonica (잔디의 물질생산과 성장해석에 관한 연구)

  • Jin, AHee Sung;Joon Huh
    • The Korean Journal of Ecology
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    • v.9 no.3
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    • pp.161-184
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    • 1986
  • An experiment was made in order to analyze the growth characteristics and productivity of Zoysia japonica under control, mowing and TIBA treatment conditions at the experimental farm of Kyung Hee univ. from May 26 to Oct. 1 in 1985. The field was planned by the randomized block design method and each treatment was given to three plots (2${\times}$2, 4${\times}$4 and 10${\times}$10 cm) and was replicated three times. Each plot was 1$m^2$ for Zoysia japonica. The sampling of each plot was taken once a week after sowing. In order to know the dry matter of total standing crops, kept 9$0^{\circ}C$ and weighted each organ of the plants. Total leaf area of a plant was measured by drawing method. The author adopted the growth analysis of English School. The increasing rates of numbers of leaf and stem were remarkably high in each plot between 10th and 12th weak after sowing and it was highest in TIBA treated plot. The increasin rate of leaf area in each plot was remarkably high beween 10th and 12th week and the maximum value of leaf area was 274.00c$m^2$ in TIBA treated plot of 100 plants/$m^2$. The increasing rate of standing crop was remarkably high between 10th and 12th week and the high increasing tendency in TIBA plot resulted from TIBA. The positive correlationship was founded between standing crop and leaf area. The evaporation rather than temperature acted as a main factor of negative correlation with standing crop during the experiment period. Solar radiation had a high positive correlation in the lower density of plot. C/F ratio was low, during the growth period, from 10th to 12th week after sowing and was low in the higher density under each treated plot. T/R ratio was not constant during the sampling period but was high in the lower density. The increasing rates of RGR and NAR were high between 11th and 12th week after sowing. Leaf area ratio was high in higher density in each plot and not constant in all treated plot.

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Development of a Post-Processing Program for Flow Analysis Based on the Object-Oriented Programming Concept (OOP 개념에 기초한 유동해석용 후처리 프로그램 개발)

  • Myong, Hyon-Kook;Ahn, Jong-Ki
    • Transactions of the Korean Society of Mechanical Engineers B
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    • v.32 no.1
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    • pp.62-69
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    • 2008
  • A post-processing program based on the OOP(Object-Oriented Programming) concept has been developed for flow visualization of the flow analysis code(PowerCFD) using unstructured cell-centered method. User-friendly GUI(GTaphic User Interface) has been built on the base of MFC(Microsoft Foundation Class). The program is organized as modules by classes including those based on VTK(Visualization ToolKit)-library, and these classes are made to function through inheritance and cooperation which is an important and valuable OOP concept. The major functions of this post-processor program are introduced and demonstrated, which include mesh plot, contour plot, vector plot, surface plots, cut plot, clip plot, xy-plot and streamline plot as well as view manipulation (translation, rotation, scaling etc).

Analysis of water balance for pending depth treatment in paddy fields (논 담수심 처리에 따른 관개용수량의 분석)

  • Park, Ki-Jung;Chung, Sang-Ok;Sohn, Seung-Ho
    • Journal of The Korean Society of Agricultural Engineers
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    • v.46 no.4
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    • pp.13-21
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    • 2004
  • The purpose of this study was to investigate tile effects of pending depth treatment on water balance in paddy fields. Field experiment was performed in an experimental farm in Taegu, southern part of Korea during the rice growing season In 2001, 2002 and 2003. Experimental plots were three 8m ${\times}$ 80m rectangular plots. Three pending depth treatments, very shallow, shallow, and deep were used. Daily values of water balance components were measured in the field. The irrigation amounts measured at the experimental plots showed that the very shallow and the shallow ponded plots required smaller amount than the deep ponded plot. The shallow ponded plot saved irrigation water about 17.7% compared with the traditional deep ponded plot in 2001 The very shallow ponded plot saved irrigation water about 25.7% compared with the traditional deep ponded Plot in 2002, The shallow ponded plot saved irrigation water about 18% compared with the deep ponded plot in 2003.