• 제목/요약/키워드: Phytophthora infestans

검색결과 120건 처리시간 0.025초

Selection of RAPD Markers for Phytophthora infestans and PCR Detection of Phytophthora infestans from Potatoes

  • Kim, Kyung-Su;Lee, Youn-Su
    • Journal of Microbiology
    • /
    • 제39권2호
    • /
    • pp.126-132
    • /
    • 2001
  • For rapid and secure differentiation of P. infestans from other Phytophthora species, two fragments obtained from randomly amplified polymorphic DNA (RAPD) profiles were selected as markers. Also, primers for in polymerase chain reaction (PCR) to detect P. infestans specifically were developed by analyzing the sequences of ITSII regions in rDNA of Phytophthora species. The primers, PISP-1 and ITS3 amplified a single. Fragment 450 bp of about in P. infestans, but not in other fungal or bacterial isolates. Annealing temperatures and template DNA quantities were varied for the optimization of PCR conditions. From the result of the PCR detection study, species-specific primers were selected under annealing temperatures ranging from 55$^{\circ}C$ to 61$^{\circ}C$, and template DNA levels ranging from 10 pg to 100 ng.

  • PDF

감자역병균(Phytophthora infestans De Bary)의 약제저항성 및 교배형 (Fungicide-Resistance and Mating Type of Phytophthora infestans Causing Potato Late Blight)

  • 이왕휴;소만서;최인영
    • 한국식물병리학회지
    • /
    • 제10권3호
    • /
    • pp.192-196
    • /
    • 1994
  • Two hundred and fourty-seven isolates of Phytophthora infestans obtained from infested potato leaves from the spring of 1991 to the fall of 1993 from potato fields in various regions of Korea were tested for their fungicides resistances. A total of 20.9% isolates were not suppressed at 50 ppm of metalaxyl in 1991, but isolates from 1993 were suppressed at 50 ppm of metalaxyl. Ten resistant isolates and 10 susceptible isolates to metalaxyl were selected and tested against oxadixyl, fosetyl-Al, and phosphorous acid. Effectiveness of these chemicals were no better than that of metalaxyl. Dimethomorph suppressed all isolates at 1 $\mu\textrm{g}$/ml suggesting that it might be a potential chemical to control Phytophthora infestans. Mating types of all isolates from diseased leaves in 1993 turned out to be A2 type.

  • PDF

Genetic DNA Marker for A2 mating type in Phytophthora infestans

  • Kim, Kwon-Jong;Lee, Youn-Su
    • Journal of Microbiology
    • /
    • 제40권4호
    • /
    • pp.254-259
    • /
    • 2002
  • The Phytophthora infestans requires two mating types for sexual reproduction. Amplified fragment length polymorphism (AFLP) was used to specifically detect different mating types of P. infestans. The AFLP primers E+AA (5'-GACTGCGTACCAATTCAA-3') and M+CAA (5'-GATGAGTCCTGAG-TAAC AA-3') detected a fragment that is specific in the A2 mating type of P. infestans. This fragment was cloned and sequenced. Based on the sequence data, PHYB-1 and PHYB-2 primer were designed to detect the A2 mating type of P. infestans. A single 347 bp segment was observed in the A2 mating type of P. infestans, but not in the A1 mating type of P. infestans or other Phytophthora spp. Identification of mating type was performed with phenotype (sexual reproduction) and genotype (CAPs marker) methods. Two factors, the annealing temperature and template DNA quantity, were investigated to determine the optimal conditions. Using mating type-specific primers, a unique band was obtained within annealing temperatures of 57$^{\circ}C$-62$^{\circ}C$ and DNA levels of 10pg-100 ng (data not shown).

Rapid and Accurate Species-Specific Detection of Phytophthora infestans Through Analysis of ITS Regions in Its rDNA

  • Kim, Kyoung-Su;Lee, Youn-Su
    • Journal of Microbiology and Biotechnology
    • /
    • 제10권5호
    • /
    • pp.651-655
    • /
    • 2000
  • Polymerase chain reaction (PCR) was used to specifically detect Phytophthora infestans by analyzing the sequences of the ribosomal internal transcribed spacer regions (ITS) in the rDNA of the Phytophthora species. Based on the sequence data, PISP-1 together with the ITS3 primer were used to detect p. infestans. A single ca. 450 bp segment was observed in P. infestans, but not in the other fungal or bacterial isolates. Two factors, the annealing temperature and template DNA quantity, were investigated to determine the optimal conditions. Using these species-specific primers, a unique band was obtained within annealing temperatures of $55^{\circ}C$-$61^{\circ}C$ and template DNA levels of 10 pg-100 ng.

  • PDF

A Genetic Marker Associated with the A1 Mating Type Locus in Phytophthora infestans

  • KIM KWON-JONG;EOM SEUNG-HEE;LEE SANG-PYO;JUNG HEE-SUN;KAMOUN SOPHIEN;LEE YOUN SU
    • Journal of Microbiology and Biotechnology
    • /
    • 제15권3호
    • /
    • pp.502-509
    • /
    • 2005
  • Sexual reproduction plays an important role in the biology and epidemiology of oomycete plant pathogens such as the heterothallic species Phytophthora infestans. Recent worldwide dispersal of A2 mating type strains of P. infestans resulted in increased virulence, gene transfer, and genetic variation, creating new challenges for disease management. To develop a genetic assay for mating type identification in P. infestans, we used the Amplified Fragment Length Polymorphism (AFLP) technique. The primer combination E+AT/M+CTA detected a fragment specific to A1 mating type (Mat-A1) of P. infestans. This fragment was cloned and sequenced, and a pair of primers (INF-1, INF-2) were designed and used to differentiate P. infestans Mat-A1 from Mat-A2 strains. The Mat A1-specific fragment was detected using Southern blot analysis of PCR products amplified with primers INF-1 and INF-2 from genomic DNA of 14 P. infestans Mat-A1 strains, but not 13 P. infestans Mat-A2 strains or 8 other isolates representing several Phytophthora spp. Southern blot analysis of genomic DNAs of P. infestans isolates revealed a 1.6 kb restriction enzyme (EcoRI, BamHI, AvaI)-fragment only in Mat-A1 strains. The A1 mating type-specific primers amplified a unique band under stringent annealing temperatures of $63^{\circ}C-64^{\circ}C$, suggesting that this PCR assay could be developed into a useful method for mating type determination of P. infestans in field material.

Biological Control of Oomycete Soilborne Diseases Caused by Phytophthora capsici, Phytophthora infestans, and Phytophthora nicotianae in Solanaceous Crops

  • Elena Volynchikova;Ki Deok Kim
    • Mycobiology
    • /
    • 제50권5호
    • /
    • pp.269-293
    • /
    • 2022
  • Oomycete pathogens that belong to the genus Phytophthora cause devastating diseases in solanaceous crops such as pepper, potato, and tobacco, resulting in crop production losses worldwide. Although the application of fungicides efficiently controls these diseases, it has been shown to trigger negative side effects such as environmental pollution, phytotoxicity, and fungicide resistance in plant pathogens. Therefore, biological control of Phytophthora-induced diseases was proposed as an environmentally sound alternative to conventional chemical control. In this review, progress on biological control of the soilborne oomycete plant pathogens, Phytophthora capsici, Phytophthora infestans, and Phytophthora nicotianae, infecting pepper, potato, and tobacco is described. Bacterial (e.g., Acinetobacter, Bacillus, Chryseobacterium, Paenibacillus, Pseudomonas, and Streptomyces) and fungal (e.g., Trichoderma and arbuscular mycorrhizal fungi) agents, and yeasts (e.g., Aureobasidium, Curvibasidium, and Metschnikowia) have been reported as successful biocontrol agents of Phytophthora pathogens. These microorganisms antagonize Phytophthora spp. via antimicrobial compounds with inhibitory activities against mycelial growth, sporulation, and zoospore germination. They also trigger plant immunity-inducing systemic resistance via several pathways, resulting in enhanced defense responses in their hosts. Along with plant protection, some of the microorganisms promote plant growth, thereby enhancing their beneficial relations with host plants. Although the beneficial effects of the biocontrol microorganisms are acceptable, single applications of antagonistic microorganisms tend to lack consistent efficacy compared with chemical analogues. Therefore, strategies to improve the biocontrol performance of these prominent antagonists are also discussed in this review.

Anti-oomycete Activity of Furanocoumarins from Seeds of Psoralea corylifolia against Phytophthora infestans

  • Shim, Sang-Hee;Kim, Jin-Cheol;Jang, Kyoung-Soo;Choi, Gyung-Ja
    • The Plant Pathology Journal
    • /
    • 제25권1호
    • /
    • pp.103-107
    • /
    • 2009
  • In the course of a searching natural antifungal compounds from plant seeds, we found that the methanol extract of Psoralea corylifolia seeds showed potent control efficacy against tomato late blight caused by Phytophthora infestans and wheat leaf rust Puccinia recondita. Under bioassay-guided purification, we isolated two furanocoumarins, psoralen and isopsoralen, with anti-oomycete activity against P. infestans. By 1-day protective application, both compounds strongly reduced the disease development of P. infestans on tomato seedlings, but hardly controlled development of leaf rust on wheat seedlings. This is the first report on the anti-oomycete activity of P. corylifolia as well as that of psoralen and isopsoralen.

Physiological Races of Phytophthora infestans in Korea

  • Zhang, Xuan-Zhe;Kim, Byung-Sup
    • The Plant Pathology Journal
    • /
    • 제23권3호
    • /
    • pp.219-222
    • /
    • 2007
  • A total of the 261 Phytophthora infestans isolates collected from 2003 to 2005 in Korea were investigated for their physiological race composition. Among the isolates, we detected 18 physiological races and the dominant races were R0.1.3.5.6.10.11 and R0.1.3.5.6.7.10.11 with frequencies of 18.4% and 11.4%, respectively. All of the P. infestans races carried multiple virulence genes and showed virulence to the potato resistance genes R1, R3, R5, R6, R7, R10 and R11, but not to R8 and R9. Therefore, it is likely that the physiological races of P. infestans were diverse in Korea.

SCAR Marker Linked with A1 Mating Type Locus in Phytophthora infestans

  • Zhang Xuan-Zhe;Seo Hyo-Won;Ahn Won-Gyeong;Kim Byung-Sup
    • Journal of Microbiology and Biotechnology
    • /
    • 제16권5호
    • /
    • pp.724-730
    • /
    • 2006
  • A sequence characterized amplified region (SCAR) marker, which was tightly linked with the A1 mating type locus in Phytophthora infestans, was developed. During the random amplified polymorphic DNA-based phylogenic studies of 33 isolates of P infestans collected from year 2002 to 2004, we found an A1 mating type-specific DNA fragment. This 573-bp DNA fragment was generated only in the genomic DNA of the A1 mating types, when OPC-5 primer was used. Based on the specific DNA sequence, we designed the primer sets for generating the A1 mating type-specific 569-bp DNA fragment. When 33 genomic DNAs of P. infestans were subjected to PCR amplification using different primer combinations, the A1 mating type-specific DNA was amplified, when LB-1F and LB-2R primers were used. The specific 569-bp DNA fragment was generated only from all 18 A1 strains, but not from 15 A2 mating type strains. These results corresponded to the mating type discriminating bioassay of 33 isolates of P. infestans. Therefore, the primer combination of LB-1F/LB2R was chosen as a SCAR marker. Overall, this study indicates that the SCAR marker could be developed into a useful tool for mating type determination of P. infestans.

Phytophthora species의 분자유전학적 분류 및 RAPD fingerprinting을 이용한 P. infestans-specific 분자마커의 선발 (Molecular Genetic Classification of Phytophthora Species and P. infestans-specific Marker Selection by RAPD Fingerprinting)

  • 김경수;신환성;김희종;우수진;함영일;신관용;이정운;김병섭;심재욱;이민웅;이윤수
    • 한국균학회지
    • /
    • 제27권6호
    • /
    • pp.394-398
    • /
    • 1999
  • 형태학적특징으로 분류된 6개의 그룹(GI, GII, GIII, GIV, GV, GVI)에 속하는 수종의 Phytophthora species 간의 RAPD fingerprinting 양상을 살펴보았다. Phytophthora의 일부 균주는 배양시 균사생장 형태가 매우 유사하며, 분리를 위한 여러 가지 특징이 중첩되기 때문에 정확한 동정이 난해하다. 본 실험결과 감자에서 분리한 균주 뿐만 아니라 토마토에서 분리한 P. infestans에서 RAED 분석을 통해서 동정이 가능함을 알 수 있었다. 증폭된 절편들은 $0.3{\sim}3.2\;kb$의 범위에 속했다. 전체 145개 밴드 중에서 109개의 polymorphic band를 얻었다. 7개의 P. infestans 간에는 최저 0.92에서 최고 0.99의 높은 유사성을 보였으며 감자를 기주로한 isolate 3 과는 $0.93{\sim}0.95$를 보였고, P. capsici 간에는 $0.77{\sim}0.86$의 유연성을 보였으며 약 80%의 수준에서 효과적으로 grouping 되었다. 특히 OPA-20를 사용하여 genus Phytophthora 내에 공통으로 존재하는 600 bp의 common band와 P. infestans에만 형성되는 680 bp의 specific band를 얻어 marker로서의 활용이 가능함을 알 수 있었다. 형태학적으로는 GVI 속하는 P. cinnamomi와 P. cryptogea간의 RAPD fingerprinting pattern에서 상이한 band 패턴을 나타냈다. 특히 OPA-04, OPA-17, OPA-18, OPA-19, OPB-12에서는 major band의 molecular weight와 생성밴드의 수에서 뚜렷한 차이를 보였다. 그리고 두 균주간의 유사성은 0.67로 나타났다. GV에 속하는 P. megasperma와 P. sojae의 경우, 유사성 정도가 0.65으로 나타났으며 이는 다른 균주와의 유사정도 보다 가장 높은 수준을 보였다. 또한 이들 균주는 OPA-08, OPA-17, OPA-19를 사용했을 때 단일 major band에서 큰 차이를 보였다.

  • PDF