• 제목/요약/키워드: Pattern Diversity

검색결과 555건 처리시간 0.028초

Effects of Long-Term Fertilization on Microbial Diversity in Upland Soils Estimated by Biolog Ecoplate and DGGE

  • An, Nan-Hee;Lee, Sang-Min;Cho, Jung-Rai;Lee, Byung-Mo;Shin, Jae-Hun;Ok, Jung-Hun;Kim, Seok-Cheol
    • 한국토양비료학회지
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    • 제47권6호
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    • pp.451-456
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    • 2014
  • Organic amendment practices can influence diversity and activities of soil microorganisms. There is a need to investigate this impact compared with other types of materials. This study was carried out to evaluate the long term effects of chemical and organic fertilizer on soil microbial community in upland field. During the last 11 years green manure, rice straw compost, rapeseed cake, pig mature compost, NPK, and NPK + pig mature compost were treated in upland soil. Organic fertilizer treatment found with high bacterial colony forming units (CFUs) as compared to chemical and without fertilizer treatment. There was no significant difference in the actinomycetes and fungal population. The average well color development (AWCD) value was the highest in green manure and, the lowest in without fertilizer treatment. Analyses based on the denaturing gradient gel electrophoresis (DGGE) profile showed that rice straw compost and pig mature compost had a similar banding pattern while rapeseed cake, NPK, NPK + pig mature compost and without fertilizer treatment were clustered in another cluster and clearly distinguished from green manure treatment. Bacterial diversity can be highly increased by the application of organic fertilizer while chemical fertilizer had less impact. It can be concluded that green manure had a beneficial impact on soil microbial flora, while, the use of chemical fertilizer could affect the soil bacterial communities adversely.

Tree Diversity, Distribution and Population Structure of a Riparian Forest from Certain Zones along the Dikhu River in Nagaland, India

  • Leishangthem, Devlin;Singh, Maibam Romeo
    • Journal of Forest and Environmental Science
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    • 제34권1호
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    • pp.31-45
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    • 2018
  • At present the biodiversity of the riparian forest is under threat due to various anthropogenic pressures. Hence study was conducted along the three unprotected zones of riparian forest in Dikhu river, Nagaland, north-east India in order to compared the diversity, distribution and population structure of riparian trees. In each zone $100{\times}100m^2$ plot were marked and subdivided into 20 plots of $10{\times}10m^2$. 10 plots on each side of the river were taken randomly covering 0.02 ha. Only tree with dbh ${\geq}10cm$ and dbh above 1.5 m above ground level were recorded as individual species. A total of 29 tree species belonging to 18 families were recorded from the three zones of the river. Tree species richness was highest at the middle zone (19) followed by upper (14) and lower zone (7). The most abundant species and family recorded at upper, middle and lower zones were Melia azaderach of Euphorbiaceae ($380\;stems\;ha^{-1}$), Terminalia chebula of Euphorbiaceae ($432.5\;stems\;ha^{-1}$) and Duabanga grandiflora of Lythraceae ($365\;stems\;ha^{-1}$) respectively. The ranges of diversity indices observed in the three zones were: Shannon-Wiener index (1.25-0.73), Simpson diversity index (0.42-0.93), Evenness index (0.47-0.37) and Index of co-dominance (0.75-0.94). Rest of other indices were also estimated and compared. Distribution of trees shows the contagious pattern common in the upper and middle zones and regular in the lower zone. The girth size class analysis demonstrated that the riparian forest is in less mature succession stage. This study emphasize the need for management and conservation of riparian forest by developing policy to declare the riparian zone as protected area to prevent further degradation and loss of biodiversity from these unregulated zones along the river.

경운 및 무경운 실험 농업생태계에서의 잡초개체군의 비교 (Comparison of Weed Populations in Conventional Till and No-till Experimental Agroecosystems)

  • Park, Tae Yoon;Eugene P. Odum
    • The Korean Journal of Ecology
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    • 제18권4호
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    • pp.471-481
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    • 1995
  • The weed population dynamics as affected by contrasting conventional tillege (CT) and no-tillage (NT) practices with a minimum herbicide application was studied in Athens, Georgia, U.S.A. Common chickweed (Stellaria media) was the most common spring weed while johnsongrass (Sorghum halepense), sicklepod (Cassia obtusifolia), and pigweed (Amaranthus retroflexus) accounted for 89∼97% of net production during summers of 1983 and 1984. Total weed production in summer of 1984 was 2∼5 times greater than that of 1983. Weed production was greater in NT plots than in CT plots in summer of 1983, but reverse was the case in summer of 1984. In spring, net production in NT plots was greater than that in CT plots, especially, in 1985. Species diversity was consistently higher in NT plots, but in the wet summer of 1984 the pattern was different, with higher diversity in CT plots. Weed species diversity was higher in the spring rye crop than in the summer grain sorghum crop. The larger but less diverse weed populations in summer of 1984 indicated that these populations experienced competitive exclusion. Under the favorable summer moisture conditions the three dominant species grew so vigorously and quickly as to exclude many less common species that were able to survive under the drier conditions in 1983. The three dominant species not only excluded other weeds in 1984 but also greatly reduced crop production. The perennial johnsongrass was equally successful, or even more so, in CT plots as in NT plots. Plowing did not kill johnsongrass rhizomes but tended to break them up, thus increasing the number of individual plants that appear after the plowing. It means that johnsongrass was not controlled by the plowing. In summer of 1983, a moderate amount of weedy growth was maintained with a minimum amount of gerbicide application in NT and CT plots. It is possible that a small mixed weed population would be beneficial by providing cover for predatory and parasitic arthropods, and by reducing soil temperature and moisture losses.

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Assessment of Biomass and Carbon Stock in Sal (Shorea robusta Gaertn.) Forests under Two Management Regimes in Tripura, Northeast India

  • Banik, Biplab;Deb, Dipankar;Deb, Sourabh;Datta, B.K.
    • Journal of Forest and Environmental Science
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    • 제34권3호
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    • pp.209-223
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    • 2018
  • We investigated tree composition, stand characteristics, biomass allocation pattern and carbon storage variability in Sal forests (Shorea robusta Garten.) under two forest management regimes (Sal forest and Sal plantation) in Tripura, Northeast India. The results revealed higher species richness (29 species), stand density of $1060.00{\pm}11.12stems\;ha^{-1}$ and diversity index ($1.90{\pm}0.08$) in Sal forest. and lower species richness (4 species), stand density of $ 230.00{\pm}37.22stems\;ha^{-1}$ and diversity index ($0.38{\pm}0.15$) in Sal plantation. The total basal cover $33.02{\pm}4.87m^2ha^{-1}$) and dominance ($0.76{\pm}0.08$) were found higher in Sal plantation than the Sal forest ($22.53{\pm}0.38m^2ha^{-1}$ and $0.23{\pm}0.02$ respectively). The total vegetation carbon density was recorded higher in Sal plantation ($219.68{\pm}19.65Mg\;ha^{-1}$) than the Sal forest ($167.64{\pm}16.73Mg\;ha^{-1}$). The carbon density estimates acquired in this study suggest that Sal plantation in Tripura has the potentiality to store a large amount of atmospheric carbon inspite of a very low species diversity. However, Sal forests has also an impending sink of carbon due to presence of large number of young trees.

Genetic Diversity Analyses of Asian Duck Populations using 24 Microsatellite Markers

  • Sultana, Hasina;Seo, Dongwon;Choi, Nu-Ri;Kim, Yeon-Su;Manjula, Prabuddha;Bhuiyan, Md. Shamsul Alam;Heo, Kang-Nyeong;Lee, Jun-Heon
    • 한국가금학회지
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    • 제44권2호
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    • pp.75-81
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    • 2017
  • A total of 340 individuals from seven duck populations were studied using 24 polymorphic microsatellite (MS) markers to identify plumage colors with genetic diversity. The estimated average number of alleles (Na), polymorphic information content (PIC) value, and expected heterozygosity (He) per locus of all populations were 11.5, 0.602, and 0.635, respectively. The calculated population genetic distance (Fst), inbreeding coefficient of individuals within duck populations (Fis), and total inbreeding among populations (Fit) were 0.135, 0.105, and 0.229, respectively. Statistical analyses for each population using 24 marker combinations, revealed that the estimated average number of effective alleles (Ne), observed heterozygosity (Ho), and fixation index of inbreeding within populations (F) were 3.129, 0.505, and 0.104, respectively. The results of genetic distance and phylogenetic analysis revealed that Korean native duck populations were clearly separated from all Bangladeshi duck populations. Moreover, all populations clustered well according to their genetic distance, but could not be clearly separated according to black and white plumage colors or plumage color pattern. The combination of these 24 MS markers can be used for discrimination and determination of the genetic diversity of native duck breeds in further investigations for conservation and special development purposes.

댕댕이나무(Lonicera caerulea var. edulis) 국내 잔존 집단의 유전적 다양성 (Genetic Diversity of Lonicera caerulea var. edulis in South Korea)

  • 최고은;남재익;김영미;박재인
    • 한국자원식물학회지
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    • 제28권4호
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    • pp.411-418
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    • 2015
  • Lonicera caerulea var. edulis is a rare species found in some alpine region of Korea. Genetic variation in L. caerulea var. edulis has been investigated by examining 161 individuals from six natural populations: Mt. Seorak 1, Mt. Seorak 2, Mt. Jeombong, Mt. Bangtae, Mt. Gyebang, Mt. Halla. The mean genetic diversity for all the six populations was 0.25 (S.I.). The highest genetic diversity was found in Mt. Seorak (S.I.=0.3158) and the lowest was in Mt. Gyebang (S.I.=0.1047). Comparatively low level of genetic diversity was observed (Ae=1.25, P= 64.6%, S.I.=0.25), which is a typical pattern for rare tree species. AMOVA showed exceptionally large proportion of genetic variations both for among populations (34.69%) and within populations (65.31%). Excluding Mt. Gyebang, the genetic variation among and within population was 18.71% and 81.29% respectively. The UPGMA dendrogram based on genetic distance is not suitable for geographic relationship. Genetic distance of Mt. Gyebang was most distant from the other populations. Excluding Mt. Gyebang, the genetic identities among the five populations were 0.95 to 0.97, which is very high similarity level of genetic identity. This low level of genetic variations and the lack of site in nature indicates that Lonicera caerulea var. edulis demanded a serious conservation.

Genetic characteristics of Korean Jeju Black cattle with high density single nucleotide polymorphisms

  • Alam, M. Zahangir;Lee, Yun-Mi;Son, Hyo-Jung;Hanna, Lauren H.;Riley, David G.;Mannen, Hideyuki;Sasazaki, Shinji;Park, Se Pill;Kim, Jong-Joo
    • Animal Bioscience
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    • 제34권5호
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    • pp.789-800
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    • 2021
  • Objective: Conservation and genetic improvement of cattle breeds require information about genetic diversity and population structure of the cattle. In this study, we investigated the genetic diversity and population structure of the three cattle breeds in the Korean peninsula. Methods: Jeju Black, Hanwoo, Holstein cattle in Korea, together with six foreign breeds were examined. Genetic diversity within the cattle breeds was analyzed with minor allele frequency (MAF), observed and expected heterozygosity (HO and HE), inbreeding coefficient (FIS) and past effective population size. Molecular variance and population structure between the nine breeds were analyzed using a model-based clustering method. Genetic distances between breeds were evaluated with Nei's genetic distance and Weir and Cockerham's FST. Results: Our results revealed that Jeju Black cattle had lowest level of heterozygosity (HE = 0.21) among the studied taurine breeds, and an average MAF of 0.16. The level of inbreeding was -0.076 for Jeju Black, while -0.018 to -0.118 for the other breeds. Principle component analysis and neighbor-joining tree showed a clear separation of Jeju Black cattle from other local (Hanwoo and Japanese cattle) and taurine/indicine cattle breeds in evolutionary process, and a distinct pattern of admixture of Jeju Black cattle having no clustering with other studied populations. The FST value between Jeju Black cattle and Hanwoo was 0.106, which was lowest across the pair of breeds ranging from 0.161 to 0.274, indicating some degree of genetic closeness of Jeju Black cattle with Hanwoo. The past effective population size of Jeju Black cattle was very small, i.e. 38 in 13 generation ago, whereas 209 for Hanwoo. Conclusion: This study indicates genetic uniqueness of Jeju Black cattle. However, a small effective population size of Jeju Black cattle indicates the requirement for an implementation of a sustainable breeding policy to increase the population for genetic improvement and future conservation.

Comparison of the oral microbial composition between healthy individuals and periodontitis patients in different oral sampling sites using 16S metagenome profiling

  • Kim, Yeon-Tae;Jeong, Jinuk;Mun, Seyoung;Yun, Kyeongeui;Han, Kyudong;Jeong, Seong-Nyum
    • Journal of Periodontal and Implant Science
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    • 제52권5호
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    • pp.394-410
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    • 2022
  • Purpose: The purpose of this study was to compare the microbial composition of 3 types of oral samples through 16S metagenomic sequencing to determine how to resolve some sampling issues that occur during the collection of sub-gingival plaque samples. Methods: In total, 20 subjects were recruited. In both the healthy and periodontitis groups, samples of saliva and supra-gingival plaque were collected. Additionally, in the periodontitis group, sub-gingival plaque samples were collected from the deepest periodontal pocket. After DNA extraction from each sample, polymerase chain reaction amplification was performed on the V3-V4 hypervariable region on the 16S rRNA gene, followed by metagenomic sequencing and a bioinformatics analysis. Results: When comparing the healthy and periodontitis groups in terms of alpha-diversity, the saliva samples demonstrated much more substantial differences in bacterial diversity than the supra-gingival plaque samples. Moreover, in a comparison between the samples in the case group, the diversity score of the saliva samples was higher than that of the supra-gingival plaque samples, and it was similar to that of the sub-gingival plaque samples. In the beta-diversity analysis, the sub-gingival plaque samples exhibited a clustering pattern similar to that of the periodontitis group. Bacterial relative abundance analysis at the species level indicated lower relative frequencies of bacteria in the healthy group than in the periodontitis group. A statistically significant difference in frequency was observed in the saliva samples for specific pathogenic species (Porphyromonas gingivalis, Treponema denticola, and Prevotella intermedia). The saliva samples exhibited a similar relative richness of bacterial communities to that of sub-gingival plaque samples. Conclusions: In this 16S oral microbiome study, we confirmed that saliva samples had a microbial composition that was more similar to that of sub-gingival plaque samples than to that of supra-gingival plaque samples within the periodontitis group.

Effects of Box Shape and Diverse Components of Large-Sized Products on Consumers' Product Evaluations in Logistic Business

  • Dongkyun Ahn;Seolwoo Park
    • Journal of Korea Trade
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    • 제26권6호
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    • pp.83-95
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    • 2022
  • Purpose - With the recent spread of COVID-19, U.S. consumers' consumption pattern is changing towards purchasing large-capacity products, as they stay at home longer. Thus, the current research investigates the effects of box shape and component diversity for large-sized products on product evaluation in logistic business. Moreover, this research examines that information-processing fluency mediates the moderating effects of box shape and product components on target evaluations to confirm psychological mechanism for generating this effect. Design/methodology - In order to examine the hypotheses, the current research conducts two online experiments. The 184 participants (Study 1), and 205 participants (Study 2) of U.S. nationality were recruited through Amazon Mechanical Turk. This research analyzes the data by using SPSS 25 and PROCESS macro 4.0. Findings - Study 1 demonstrates that when the height of a box is greater than its width, products with single components promote positive target evaluations, while when the width of box is greater than its height, products with a variety of components lead to positive target evaluations. Study 2 shows that the same results are replicated in other product categories and with different box shape ratios. Moreover, Study 2 also finds that the ease of information processing mediates the interaction effects of box shape and component diversity on U.S. consumers' target evaluations. Originality/value - The current research has originality in that it investigates the effect of box shape and product composition diversity on U.S. consumer product evaluation from the perspective of information-processing theory Moreover, this research has practical implications for global traders who prepare for entering the U.S. market.

남한강 상류 수계에서 어류의 다변수 모델 지수 산정 및 군집지수와의 비교평가 (Multi-metric Index Assessments of Fish Model and Comparative Analysis of Community)

  • 이재훈;홍영표;안광국
    • 생태와환경
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    • 제40권2호
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    • pp.327-336
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    • 2007
  • 본 연구는 1999년 6월과 8월에 남한강 상류수계의 15개 조사지점으로부터 어류의 다변수 모델을 이용하여 생태건강성을 평가하였고, 전통적인 군집분석에 의한 지수와 서로 비교 평가하였다. 본 연구를 위해 우리나라의 생태적 특성에 맞게 보완된 10-메트릭 건강성 평가 모델을 적용하였다. 어류조사에 따르면, 총 6과 24종이 출현하였고, 생태적인 교란정도와 하천차수에 따라 일부 변이를 보였다. 생태길드분석에 따르면, 민감종과 충식종은 각각 91%, 56%로서 생태적으로 수환경이 건강한 상태로 나타났다. 그러나 S1과 S2의 2차 하천에서는 내성종이 66%, 잡식종이 76%가 채집되어 물리적 서식지의 질적 저하가 영향을 나타낸 것으로 판단되었다. 본 수계에서 생태건강도의 평균 모델값은 38로서 양호상태를 보였고, 개별적 IBI 값의 패턴은 다른 산간계류형 하천들과 유사하여 비교적 이화학적 오염에 의한 영향이 적은 것으로 사료되었다. 하천차수에 따른 IBI 값과 종다양성 지수와의 비교에 따르면, 두 변수 값은 분명한 차이가 있음을 보여주었다 Shannon-Weaver의 종다양성 지수는 실제 군집상태를 잘 반영하지 못했으며, 특히 2차 하천에서의 종다양성 지수 변이의 폭은 IBI 값으로 산정한 생태 건강도에 비해 훨씬 크게 나타났다. 본 연구결과는 다변수 메트릭에 의한 연구 접근방식은 수생태계 관리에 유용한 도구로 사용될 수 있으나, 기존의 종 다양도 지수와 같은 군집 분석법은 하천차수를 고려하지 않을 경우 비효율적인 것으로 사료되었다.