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Direct PCR Detection of the Causal Agents, Soybean Bacterial Pustule, Xanthomonas axonopodis pv. glycines in Soybean Seeds (콩 종자에서 Xanthomonas axonopodis pv. glycines의 검출을 위한 Direct PCR 방법 개발)

  • Lee, Yong-Ju;Kang, Mi-Hyung;Noh, Tae-Hwan;Lee, Du-Ku;Lee, Geon-Hwi;Kim, Si-Ju
    • Research in Plant Disease
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    • v.15 no.2
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    • pp.83-87
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    • 2009
  • Direct Polymerase Chain Reaction (PCR) method that combines biological and enzymatic amplification of PCR targets was developed for the detection of Xanthomonas axonopodis pv. glycines on soybeen seeds without DNA isolation. Primers Xag F1 and Xag R1 were designed to specifically amplify a 401 bp fragment of the glycinecin A gene of X axonopodis pv. glycines. Xag F1 and Xag R1 were used to carry out the PCR analysis with genomic DNA from 45 different bacterial strains including phylogenetically related bacteria with X axonopodis pv. glycines, and other bacterial strains of different genus and species. The PCR assay using this set of primers were able to detect X axonopodis pv. glycines with DNA concentration as low as 200 fg and $1.8{\times}10^3$ cfu/ml. The Xag was detected from the seed samples incubated for 2 hrs with shaking and the intensity of the band was increase with the incubation time of seeds. The Direct PCR assay method without DNA isolation makes detection of X. axonopodis pv. glycines on soybean seeds easier and more sensitive than other conventional methods. The developed seed assay using direct PCR method will be useful for the specific detection of X. axonopodis pv. glycines in soybean seed samples.

GafChromic Film Dosimetry for Stereotactic Radiosurgery with a Linear Accelerator (선형가속기를 이용한 정위방사선 치료 시 GafChromic Film을 이용한 선량측정)

  • Han Seung Hee;Cho Byung Chul;Park Suk Won;Oh Do Hoon;Park Hee Chul;Bae Hoon Sik
    • Radiation Oncology Journal
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    • v.21 no.2
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    • pp.167-173
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    • 2003
  • Purpose: The purpose of this study was to evaluate whether a GafChromic film applied to stereotactic radiosurgery with a linear accelerator could provide information on the value for acceptance testing and quality control on the absolute dose and relative dose measurements and/or calculation of treatment planning system. Materials and methods: A spherical acrylic phantom, simulating a patient's head, was constructed from three points. The absolute and relative dose distributions could be measured by inserting a GafChromic film into the phantom. We tested the use of a calibrated GafChromic film (MD-55-2, Nuclear Associate, USA) for measuring the optical density. These measurements were achieved by irradiating the films with a dose of 0-112 Gy employing 6 MV photon. To verify the accuracy of the prescribed dose delivery to a target isocenter using a five arc beams (irradiated in 3 Gy per one beam) setup, calculated by the Linapel planning system the absolute dose and relative dose distribution using a GafChromic film were measured. All the irradiated films were digitized with a Lumiscan 75 laser digitizer and processed with the RIT113 film dosimetry system. Results: We verified the linearity of the Optical Density of a MD-55-2 GafChromic film, and measured the depth dose profile of the beam. The absolute dose delivered to the target was close to the prescribed dose of Linapel within an accuracy for the GafChromic film dosimetry (of $\pm$3$\%$), with a measurement uncertainty of $\pm$1 mm for the 50$\~$90$\%$ isodose lines. Conclusion: Our results have shown that the absolute dose and relative dose distribution curves obtained from a GafChromic film can provide information on the value for acceptance. To conclude the GafChromic flim is a convenient and useful dosimetry tool for linac based radiosurgery.

Enhancement of Image Contrast in Linacgram through Image Processing (전산처리를 통한 Linacgram의 화질개선)

  • Suh, Hyun-Suk;Shin, Hyun-Kyo;Lee, Re-Na
    • Radiation Oncology Journal
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    • v.18 no.4
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    • pp.345-354
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    • 2000
  • Purpose : Conventional radiation therapy Portal images gives low contrast images. The purpose of this study was to enhance image contrast of a linacgram by developing a low-cost image processing method. Materials and Methods : Chest linacgram was obtained by irradiating humanoid Phantom and scanned using Diagnostic-Pro scanner for image processing. Several types of scan method were used in scanning. These include optical density scan, histogram equalized scan, linear histogram based scan, linear histogram independent scan, linear optical density scan, logarithmic scan, and power square root scan. The histogram distribution of the scanned images were plotted and the ranges of the gray scale were compared among various scan types. The scanned images were then transformed to the gray window by pallette fitting method and the contrast of the reprocessed portal images were evaluated for image improvement. Portal images of patients were also taken at various anatomic sites and the images were processed by Gray Scale Expansion (GSE) method. The patient images were analyzed to examine the feasibility of using the GSE technique in clinic. Results :The histogram distribution showed that minimum and maximum gray scale ranges of 3192 and 21940 were obtained when the image was scanned using logarithmic method and square root method, respectively. Out of 256 gray scale, only 7 to 30$\%$ of the steps were used. After expanding the gray scale to full range, contrast of the portal images were improved. Experiment peformed with patient image showed that improved identification of organs were achieved by GSE in portal images of knee joint, head and neck, lung, and pelvis. Conclusion :Phantom study demonstrated that the GSE technique improved image contrast of a linacgram. This indicates that the decrease in image quality resulting from the dual exposure, could be improved by expanding the gray scale. As a result, the improved technique will make it possible to compare the digitally reconstructed radiographs (DRR) and simulation image for evaluating the patient positioning error.

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Die Organisation von Mikrostrukturen der zweisprachigen $W\"{o}rterb\"{u}cher$ Deutsch/Koreanisch (독-한 두말사전의 미시구조 조직)

  • Kim Kyong
    • Koreanishche Zeitschrift fur Deutsche Sprachwissenschaft
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    • v.5
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    • pp.183-202
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    • 2002
  • Die vorliegende Arbeit verfolgt zwei Ziele: zum einen sollen die Entwicklungen in der modernen zweisprachigen Lexikographie mit Ausgangssprache Deutsch skizzenhaft vorgestellt und einige Forschungsdefizite benannt werden, zum anderen sollen die Ergebnisse und Methoden der neueren Lexikographie anhand von Beispielartikeln der drei $einschl\"{a}gigen$ deutsch-koreanischen $Gro{\ss}w\"{o}rterblicher$ kontrastiert und diskutiert werden. Zuerst wird eine Typologie der zweisprachigen $W\"{o}rterb\"{u}cher$ erstellt, derzufolge es jeweils 2 aktive und 2 passive Worterblicher pro Sprachenpaar gibt. Das Aktiv-Passiv­Prinzip gilt als ein grundlegender Ausgangspunkt $f\"{u}r$ die zweisprachige Lexikographie. Eine Erweiterung der Unterscheidungskriterien scheint nicht $zweckm\"{a}{\ss}ig$ und angesichts praktischer Schwierigkeiten auch kaum realisierbar. $Pl\"{a}diert\;wird\;f\"{u}r\;eine\;st\"{a}rkere\;Ber\"{u}cksichtigung$ der Benutzungssituationen, zu denen z.B. der Grad der Sprachbeherr­schung der jeweiligen Benutzergruppe, die $m\"{o}glichen\;Benutzungsanl\"{a}sse$, der Kenntnisstand $bez\"{u}glich$ der Benutzerhinweise sowie die technische Geschicklichkeit bei der $W\"{o}rterbuch-benutzung\;etc.\;zu\;z\"{a}hlen$ sind. In makrostruktueller Hinsicht werden die Selektion und die Anordnung der Lemmata diskutiert. Bei der Lemmaauswahl $w\"{a}re\;es\;w\"{u}nschenswert$, auf der Grundlage eines Lemmavergleiches der verschiedensten Quellenworterbucher ein datenbasiertes Korpus zu erstellen. Dazu $k\"{o}nnten$ folgende Materialien ausgewertet werden: (1) einsprachige allgemeine (ad spezielle) $W\"{o}rterb\"{u}cher$ (z.B. Deutsch/Koreanisch), (2) zweisprachige allgemeine (od spezielle) Worterblicher (z.B. Deutsch-Koreanisch, Deutsch-Englisch) etc. Die $blo{\ss}e\;\"{U}bersetzung$ lediglich eines einzigen $Quellenw\"{o}rterbuches\;k\"{o}nnte$ dagegen zu $unerw\"{u}nschten\;Einseitigkeiten\;f\"{u}hren$. Was die Anordnung der Lemmata in zweisprachigen $W\"{o}rterb\"{u}chern$ betrifft, $k\"{o}nnen$ dieselben drei makrostrukturellen Typen unterschieden werden, wie in einsprachigen $W\"{o}rterb\"{u}chern$: (1) glattalphabetisch, (2) nischenalphabetisch, (3) nestalphabetisch. Unter den zu untersuchenden $W\"{o}rterb\"{u}chern$ weisen das EDK und das HDK die nischenalpha­betische Makrostruktur auf, das MDK ist dagegen nestalphabetisch angeordnet. Je nachdem, wie die Polysemiestruktur und die Mehr-Wort-Einheit kombinieren, werden die drei Arten der Mikrostruktur unterschieden: (1) die integrierte Mikrostruktur, (2) die nichtintegrierte Mikrostruktur, (3) die partiell integrierte Mikrostruktur. $W\"{a}hrend$ das EDK und das HDKeine integrierte Mikrostruktur besitzen, weist das HDK eine partiell integrierte Mikrostruktur auf. Die Artikelgestaltung durch die nichtintegrierte Mikrostruktur, die $h\"{a}ufig$ in der zweisprachigen Lexikographie angewandt wird und entsprechende Vorteile besitzt, sallte $k\"{u}nftig\;als\;Gestaltungsm\"{o}glichkeit\;st\"{a}rker$in Betracht gezogen werden. In Bezug auf die Organisation der Mikrostruktur werden vier Bauteile, das sind Lemma-, $\"{A}quivalent-$, Diskriminator- und Beispielangaben untersucht. Die $\"{U}bersetzungs\"{a}quivalente$ werden je nach dem lexikalisch-semantischen Abdeckungsgrad mit dem Lemma in drei Typen eingeteilt: (1) $Voll\"{a}quivalent,\;(2)\;Teil\"{a}quivalent,\;(3)\;Null\"{a}quivalent$. In der Mehrheit kommen die Teil- oder $Null\"{a}quivalente$ vor, weil die ausgangssprachlichen Lemmata und die zielsprachlichen $\"{A}quivalente$ in sich Polysemiestruktur aufweisen. $Informationsm\"{a}ngel$ auszugleichen ist die Funktion des Diskriminators, in dem Glosse, Markierungen und metasprachliche $Erl\"{a}uterungen$ zusammenwirken. $Verbesserungsw\"{u}rdig\;sind\;die\;g\"{a}ngigen$ deutsch-koreanischen $W\"{o}rterb\"{u}cher$ var allem im Hinblick auf die stilistischen Markierungen; die Inkongruenz des Stils zwischen den beiden verschiedenen Sprachen wird bislang zu wenig $ber\"{u}cksichtigt$ und sagar in ein und demselben $W\"{o}rterbuch$ nicht konsequent dargestellt. Trotz der relativen $Geringsch\"{a}tzung$ von Beispielangaben in der $europ\"{a}ischen$ zweisprachigen passiven Lexikographie sallte diesen in deutsch-koreanischen $W\"{o}rterb\"{u}chern$ mehr Aufmerksamkeit gewidrnet werden. Sie sind dem koreanischen Benutzer eine wichtige Hilfe, indem sie die $\"{A}quivalentenangaben\;implizite\;erg\"{a}nzen$ und Informationen $\"{u}ber$ die syntaktisch-semantische und pragmatische Kontextrestriktion bieten. $Dar\"{u}berhinaus$ stellen sie selbst interessante kulturelle, geistige und landeskundliche etc. Informationen dar. Was den Artikelaufbau betrifft, wird das Van Dale-Modell diskutiert, d.h. das kategoriell-semantisch-alphabetische Prinzip, das trotz mancher Kritikpunkte viele interessante Anregungen $f\"{u}r$ die zweisprachige Lexikographie Deutsch-Koreanisch bietet, wo z.B. noch nicht die $Pr\"{a}positionen$ in der Beispielangabe durch typographische Hervorhebung $pr\"{a}sentiert$ worden sind. Aus $Platzgr\"{u}nden$ sind hier nur wenige Beispielartikel mit substantivischen Lemmata $angef\"{u}hrt$ und analysiert worden. Um die $h\"{o}here$ Generalisierbarkeit zu erreichen, brauchen die Untersuchungs- materialien mindestens einen bestimmten Umfang. Derartige empirische Forschungen $k\"{o}nnen$ als Impulse dazu beitragen, $k\"{u}nftige\;W\"{o}rterb\"{u}cher$ im Sinne einer $Ber\"{u}cksichtigung$ neuerer lexikographischer Erkenntnisse verbessern zu helfen.

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Changes in the Quality of Peeled Chestnut Achieved by Browning Inhibition Treatments During Storage (갈변저해제 처리에 따른 저장 중 박피밤의 품질 변화)

  • Oh, Sung-Il;Kim, Chul-Woo;Lee, Uk
    • Journal of Korean Society of Forest Science
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    • v.108 no.4
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    • pp.610-617
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    • 2019
  • The effects of dippin treatments using Glycyrrhiza uralensis extract (0.5%, 1.0%, 2.0%) and calcium chloride (0.5%, 1.0%, 2.0%) on the quality of peeled chestnuts were investigated. Following dipping treatment, peeled chestnuts were vacuum-packed using a 75-㎛ polyethylene PE and nylon film, and stored in a 0 ℃ incubator for six weeks. The dipping treatments of the peeled chestnuts successfully achieved browning inhibition. The browning degree following 2.0% calcium chloride treatment was the lowest at 0.68 OD. The color change (ΔE) of the peeled chestnuts was the highest (6.0) in the control, and the lowest (3.5) for the 1.0% and 2.0% calcium chloride-treated samples. G. uralensis extract and calcium chloride treatments did not impact weight, moisture loss rate, firmness, or the soluble solid content of the peeled chestnuts following storage. The decay rate was 12.0% in the control group, and 11.0%, 11.5%, and 11.0% for G. uralensis treatment at 0.5%, 1.0%, and 2.0% calcium chloride treatment, respectively, and 13.0%, 9.5%, and 9.0% at 0.5%, 1.0%, and 2.0% calcium chloride treatment, respectively. Sensory evaluation (palatability, off-odor) showed that a 2.0% G. uralensis extract treatment presented excellent results during the storage period. Texture and color indicated no differences as a result of the browning inhibition treatments. Therefore, when considered comprehensively, a 2.0% G. uralensis extract treatment was shown to be effective for maintaining the quality and providing browning inhibition of peeled chestnuts. This result isexpected to solve the problem of quality deterioration in the form of sour taste, which is a problem in chemical processing.

Antioxidant and antiproliferating effects of Setaria italica, Panicum miliaceum and Sorghum bicolor extracts on prostate cancer cell lines (조, 기장, 수수 추출물의 항산화 효과 및 전립선 암세포주 증식 억제 효능)

  • Kim, Jeong-Ho;Cho, Hyun-Dong;Hong, Seong-Min;Lee, Ju-Hye;Lee, Yong-Seok;Kim, Du-Hyun;Seo, Kwon-Il
    • Food Science and Preservation
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    • v.23 no.7
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    • pp.1033-1041
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    • 2016
  • In this study, we evaluated antioxidant and antiproliferating effects of Setaria italica extract (SIE), Panicum miliaceum extract (PME) and Sorghum bicolor extract (SBE). Antioxidant effects of these extracts were determined by assessing DPPH radical scavenging activity, $ABTS^+$ radical scavenging activity, reducing power and superoxide dismutase (SOD)-like activity. From high concentrations ($1,000{\mu}g/mL$) of each extract at DPPH radical scavenging activities of SIE, PME and SBE were 10.5%, 5.5% and 86.8% respectively, $ABTS^+$ radical activities were 4.92%, 5.9% and 62.3% respectively, reducing powers (OD 700) were 0.15, 0.18 and 1.7 respectively, and SOD-like activities were 17.0%, 15.9% and 38.6% respectively. In addition, SBE significantly decreased the cell viability of androgen-sensitive lymph node metastasis type of prostate cancer (LNCaP) cells in a dose-dependent manner. Morphological study of SBE-treated LNCaP cells revealed distorted and shrunken cell masses. SBE-induced cell death was confirmed by observation of nuclear condensation and increased formation of apoptotic bodies. The antiproliferative effect of SBE seems to be associated with the antioxidant activity of its polyphenol content. The results of this study indicate that SBE can exert antioxidant and antiproliferative effects and may be as a useful food material.

Effect of Alkaline Ionized Water on Stabilization of Antioxidation, Antithrombosis and Antibacterial Activities (항산화, 항혈전 및 항세균 활성의 안정화에 미치는 알칼리 이온수의 영향)

  • Ahn, Seon-Mi;Kang, Mee-A;Kim, Moo-In;Sohn, Ho-Yong
    • Journal of Life Science
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    • v.20 no.7
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    • pp.1107-1112
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    • 2010
  • In this study, the stable maintenance of bioactivity in alkaline ionized water (AIW) and antibacterial effects of AIW were evaluated to confirm benefits of AIW. As controls, purified water (PW) and tap drinking water (DW) were used. The pH and ORP (oxidation-reduction potential) of AIW, PW and DW used were 9.5 and 120 mV, 7.2 and 144 mV, and 7.3 and 564 mV, respectively. High level of minerals was observed in DW (DW>AIW>PW of mineral contents). Concentrations of $Ca^{++}$ and $Na^+$ in DW were 14.5, and 8.4 mg/l, respectively, while no $Ca^{++}$, $Mg^{++}$, $K^+$, and $Na^+$ were detected in PW. Evaluation of antioxidant activities for AIW, PW and DW showed that the waters did not act as antioxidants. However, the DPPH (1,1-diphenyl-2-picryl hydrazyl) or superoxide radical scavenging activities or reducing power of vitamin C were stably maintained in AIW and PW, though not in DW, against heat treatment ($60^{\circ}C$) or vigorous shaking (120 rpm) at $37^{\circ}C$. Similarly, after aspirin treatment at $60^{\circ}C$ for 1 hr, the antithrombosis activity in PW and AIW was 62.6% and 55.3%, while that of DW was 52.1%. Furthermore, cell growth analysis and viable cell count of Escherichia coli H7:O157 in PW, AIW and DW showed that AIW and DW, not DW, have antibacterial activities. Our results suggest that the state of water, for example pH, ORP and mineral contents of water, should be considered in medicine or food industries, and that AIW has high potential for utilization in various fields.

Antioxidant and Angiotensin Converting Enzyme I Inhibitory Activities of Extracts from Mulberry (Cudrania tricuspidata) Fruit subjected to Different Drying Methods (건조방법에 따른 꾸지뽕열매 추출물의 항산화활성과 Angiotensin Converting Enzyme I 저해활성)

  • Youn, Kwang-Sup;Kim, Jae-Won
    • Journal of the Korean Society of Food Science and Nutrition
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    • v.41 no.10
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    • pp.1388-1394
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    • 2012
  • The physiological functionalities of 70% ethanol extracts (EE) from Cudrania tricuspidata fruit (ECFD, EE of C. tricuspidata subjected to freeze-drying; ECHD, EE of C. tricuspidata subjected to heat air drying; ECID, EE of C. tricuspidata subjected to infrared drying) were investigated. Yields of freeze-dried powders of ECFD, ECHD, and ECID were 51.50%, 53.91%, and 56.14%, respectively. Color $L^*$, $a^*$, $b^*$, and $H^{\circ}$ values of ECHD and ECID decreased. Dried ECHD and ECID had relatively higher contents of total polyphenolics and flavonoids than ECFD. Electron donating abilities at a concentration of 10 mg/mL (w/v) were in order of ECID (62.37%) >ECHD (80.17%)>ECFD (77.80%). Reducing powers ($OD_{700}$) of ECFD, ECHD, and ECID were 0.75, 1.70, and 1.89, respectively. Additionally, ABTS radical scavenging ability of ECID was the highest with a value of 62.37% at a concentration of 10 mg/mL (w/v). Nitrite scavenging activities of ECFD, ECHD, and ECID at a concentration of 10 mg/mL (w/v) were 28.76%, 30.69%, and 41.64%, respectively. SOD (superoxide dismutase)-like activities at 5 mg/mL (w/v) were in the order ECFD (891.93 mUnits)>ECHD (723.02 mUnits)>EFID (611.97 mUnits). Whereas ferrous ion chelating activity of ECFD (52.36%) and ECID (47.16%) was significantly higher than that of ECHD (30.04%). ACE inhibitory and xanthine oxidase (XO) inhibitory activities of ECHD and ECID at a concentration of 1 mg/mL (w/v) were higher than those of ECFD. In conclusion, we provided experimental evidence that extracts of pre-dried C. tricuspidata exhibit increased physiological functionalities. Further, infrared drying technique is the best method for enhancement of antioxidant activity of C. tricuspidata fruit.

Cold shock sensitive growth of Bacillus subtilis mutants deleted for genes involved in fatty acid synthesis (지방산 생합성 관련 유전자 결손 Bacillus subtilis 균주들의 저온충격 민감성 생장)

  • Kim, Do Hyung;Lee, Sang Soo
    • Korean Journal of Microbiology
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    • v.54 no.1
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    • pp.9-17
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    • 2018
  • To investigate the role of bkdR, sigL, yplP, and des genes which were known to be involved in fatty acid synthesis and sensitive at low temperature, deletion mutants of Bacillus subtilis CU1065 and JH642 were constructed. To determine the low temperature sensitivity of these genes, we compared the growth curves of cells at $37^{\circ}C$ and $15^{\circ}C$. At $37^{\circ}C$, wild type and deletion mutants showed almost similar growth but only bkdR deletion strain at $15^{\circ}C$ showed very slow growing compared with wild type. At $15^{\circ}C$ sigL and yplP deletions were somewhat slower or similar to those of wild type strain. Double and triple mutants for bkdR, sigL, yplP deletions were constructed and grown at $20^{\circ}C$ in LB agar to investigate cold sensitive growth. Double or triple deletions including bkdR deletion showed cold sensitive growing. In order to identify more clearly cold sensitive growth, the experiments were carried out under cold shock conditions in which the temperature was lowered from $37^{\circ}C$ to $15^{\circ}C$ at the point of 0.4 optical densities at 600 nm. In these cold shock experiments, only bkdR deletion showed significantly lower growing and additional des deletion increases cold sensitivity. The bkdR activates the bkd operon, which catabolized isoleucine, valine and leucine, amino acids and produce precursors for the synthesis of branched fatty acids. At cold shock growing of bkdR deletion strain, isoleucine recovered cold sensitivity of bkdR deletion but valine did not restore cold sensitivity. Isoleucine is used as a precursor for the synthesis of anteiso-branched fatty acids. On the other hand, valine is used as a precursor for the synthesis of iso-branched fatty acids. This indicates that anteiso-branched fatty acid plays an important role at the cold shock condition.

Understanding the Response Characteristics of X-ray Verification Film (X-선 Verification 필름의 반응 특성에 관한 연구)

  • Yeo Inhwan;Seong Jinsil;Chu Sung Sil;Kim Gwi Eon;Suh Chang Ok;Burch Sandra E.;Wang Chris K.
    • Radiation Oncology Journal
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    • v.16 no.4
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    • pp.505-515
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    • 1998
  • Purpose : This study is intended to understand the sensitometric characteristics and the emulsion properties of the commercially available CEA TVS film in comparison with the Kodak X-Omat V film. Materials and Methods : For this purpose, we have formulated an analytic expression of the characteristic curves for x-ray film exposed to mixed radiation of electrons, photons, and visible light. This mathematical expression was developed based on reaction-rate and target-hit theories. Unlike previous expressions. it relates optical density to emulsion properties such as grain size and silver bromide content We have also developed a quantity which characterizes the film response to visible light relative to that to photons and electrons. This quantity could be expressed as a function of grain area. Thus, we have developed mathematical expressions and quantities with which the emulsion properties of the films can be revealed based on the sensitometric characteristics. Demonstrating the use of this analytical study, we exposed CEA and Kodak verification films to the mixed radiation of electrons, photons, and visible light, and interpreted the experimental results accordingly. Results : We have demonstrated that: (1) the saturation density increases as the silver bromide content increases, (2) the time required to reach the threshold dose (to which the film begins to respond) when films are exposed to visible light decreases as the grain size increases, and (3) the CEA film contains more silver bromide. whereas the Kodak film contains larger grains. These findings were supported by the data provided by the manufacturers afterward. Conclusion : This study presented an analytical and experimental basis for understanding the response of X-ray film with respect to the emulsion properties.

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