• Title/Summary/Keyword: Node2vec

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Improving Embedding Model for Triple Knowledge Graph Using Neighborliness Vector (인접성 벡터를 이용한 트리플 지식 그래프의 임베딩 모델 개선)

  • Cho, Sae-rom;Kim, Han-joon
    • The Journal of Society for e-Business Studies
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    • v.26 no.3
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    • pp.67-80
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    • 2021
  • The node embedding technique for learning graph representation plays an important role in obtaining good quality results in graph mining. Until now, representative node embedding techniques have been studied for homogeneous graphs, and thus it is difficult to learn knowledge graphs with unique meanings for each edge. To resolve this problem, the conventional Triple2Vec technique builds an embedding model by learning a triple graph having a node pair and an edge of the knowledge graph as one node. However, the Triple2 Vec embedding model has limitations in improving performance because it calculates the relationship between triple nodes as a simple measure. Therefore, this paper proposes a feature extraction technique based on a graph convolutional neural network to improve the Triple2Vec embedding model. The proposed method extracts the neighborliness vector of the triple graph and learns the relationship between neighboring nodes for each node in the triple graph. We proves that the embedding model applying the proposed method is superior to the existing Triple2Vec model through category classification experiments using DBLP, DBpedia, and IMDB datasets.

A Node2Vec-Based Gene Expression Image Representation Method for Effectively Predicting Cancer Prognosis (암 예후를 효과적으로 예측하기 위한 Node2Vec 기반의 유전자 발현량 이미지 표현기법)

  • Choi, Jonghwan;Park, Sanghyun
    • KIPS Transactions on Software and Data Engineering
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    • v.8 no.10
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    • pp.397-402
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    • 2019
  • Accurately predicting cancer prognosis to provide appropriate treatment strategies for patients is one of the critical challenges in bioinformatics. Many researches have suggested machine learning models to predict patients' outcomes based on their gene expression data. Gene expression data is high-dimensional numerical data containing about 17,000 genes, so traditional researches used feature selection or dimensionality reduction approaches to elevate the performance of prognostic prediction models. These approaches, however, have an issue of making it difficult for the predictive models to grasp any biological interaction between the selected genes because feature selection and model training stages are performed independently. In this paper, we propose a novel two-dimensional image formatting approach for gene expression data to achieve feature selection and prognostic prediction effectively. Node2Vec is exploited to integrate biological interaction network and gene expression data and a convolutional neural network learns the integrated two-dimensional gene expression image data and predicts cancer prognosis. We evaluated our proposed model through double cross-validation and confirmed superior prognostic prediction accuracy to traditional machine learning models based on raw gene expression data. As our proposed approach is able to improve prediction models without loss of information caused by feature selection steps, we expect this will contribute to development of personalized medicine.

Document Classification using Recurrent Neural Network with Word Sense and Contexts (단어의 의미와 문맥을 고려한 순환신경망 기반의 문서 분류)

  • Joo, Jong-Min;Kim, Nam-Hun;Yang, Hyung-Jeong;Park, Hyuck-Ro
    • KIPS Transactions on Software and Data Engineering
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    • v.7 no.7
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    • pp.259-266
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    • 2018
  • In this paper, we propose a method to classify a document using a Recurrent Neural Network by extracting features considering word sense and contexts. Word2vec method is adopted to include the order and meaning of the words expressing the word in the document as a vector. Doc2vec is applied for considering the context to extract the feature of the document. RNN classifier, which includes the output of the previous node as the input of the next node, is used as the document classification method. RNN classifier presents good performance for document classification because it is suitable for sequence data among neural network classifiers. We applied GRU (Gated Recurrent Unit) model which solves the vanishing gradient problem of RNN. It also reduces computation speed. We used one Hangul document set and two English document sets for the experiments and GRU based document classifier improves performance by about 3.5% compared to CNN based document classifier.

A novel Node2Vec-based 2-D image representation method for effective learning of cancer genomic data (암 유전체 데이터를 효과적으로 학습하기 위한 Node2Vec 기반의 새로운 2 차원 이미지 표현기법)

  • Choi, Jonghwan;Park, Sanghyun
    • Proceedings of the Korea Information Processing Society Conference
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    • 2019.05a
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    • pp.383-386
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    • 2019
  • 4 차산업혁명의 발달은 전 세계가 건강한 삶에 관련된 스마트시티 및 맞춤형 치료에 큰 관심을 갖게 하였고, 특히 기계학습 기술은 암을 극복하기 위한 유전체 기반의 정밀 의학 연구에 널리 활용되고 있어 암환자의 예후 예측 및 예후에 따른 맞춤형 치료 전략 수립 등을 가능케하였다. 하지만 암 예후 예측 연구에 주로 사용되는 유전자 발현량 데이터는 약 17,000 개의 유전자를 갖는 반면에 샘플의 수가 200 여개 밖에 없는 문제를 안고 있어, 예후 예측을 위한 신경망 모델의 일반화를 어렵게 한다. 이러한 문제를 해결하기 위해 본 연구에서는 고차원의 유전자 발현량 데이터를 신경망 모델이 효과적으로 학습할 수 있도록 2D 이미지로 표현하는 기법을 제안한다. 길이 17,000 인 1 차원 유전자 벡터를 64×64 크기의 2 차원 이미지로 사상하여 입력크기를 압축하였다. 2 차원 평면 상의 유전자 좌표를 구하기 위해 유전자 네트워크 데이터와 Node2Vec 이 활용되었고, 이미지 기반의 암 예후 예측을 수행하기 위해 합성곱 신경망 모델을 사용하였다. 제안하는 기법을 정확하게 평가하기 위해 이중 교차 검증 및 무작위 탐색 기법으로 모델 선택 및 평가 작업을 수행하였고, 그 결과로 베이스라인 모델인 고차원의 유전자 벡터를 입력 받는 다층 퍼셉트론 모델보다 더 높은 예측 정확도를 보여주는 것을 확인하였다.

A Study on Searching for Export Candidate Countries of the Korean Food and Beverage Industry Using Node2vec Graph Embedding and Light GBM Link Prediction (Node2vec 그래프 임베딩과 Light GBM 링크 예측을 활용한 식음료 산업의 수출 후보국가 탐색 연구)

  • Lee, Jae-Seong;Jun, Seung-Pyo;Seo, Jinny
    • Journal of Intelligence and Information Systems
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    • v.27 no.4
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    • pp.73-95
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    • 2021
  • This study uses Node2vec graph embedding method and Light GBM link prediction to explore undeveloped export candidate countries in Korea's food and beverage industry. Node2vec is the method that improves the limit of the structural equivalence representation of the network, which is known to be relatively weak compared to the existing link prediction method based on the number of common neighbors of the network. Therefore, the method is known to show excellent performance in both community detection and structural equivalence of the network. The vector value obtained by embedding the network in this way operates under the condition of a constant length from an arbitrarily designated starting point node. Therefore, it has the advantage that it is easy to apply the sequence of nodes as an input value to the model for downstream tasks such as Logistic Regression, Support Vector Machine, and Random Forest. Based on these features of the Node2vec graph embedding method, this study applied the above method to the international trade information of the Korean food and beverage industry. Through this, we intend to contribute to creating the effect of extensive margin diversification in Korea in the global value chain relationship of the industry. The optimal predictive model derived from the results of this study recorded a precision of 0.95 and a recall of 0.79, and an F1 score of 0.86, showing excellent performance. This performance was shown to be superior to that of the binary classifier based on Logistic Regression set as the baseline model. In the baseline model, a precision of 0.95 and a recall of 0.73 were recorded, and an F1 score of 0.83 was recorded. In addition, the light GBM-based optimal prediction model derived from this study showed superior performance than the link prediction model of previous studies, which is set as a benchmarking model in this study. The predictive model of the previous study recorded only a recall rate of 0.75, but the proposed model of this study showed better performance which recall rate is 0.79. The difference in the performance of the prediction results between benchmarking model and this study model is due to the model learning strategy. In this study, groups were classified by the trade value scale, and prediction models were trained differently for these groups. Specific methods are (1) a method of randomly masking and learning a model for all trades without setting specific conditions for trade value, (2) arbitrarily masking a part of the trades with an average trade value or higher and using the model method, and (3) a method of arbitrarily masking some of the trades with the top 25% or higher trade value and learning the model. As a result of the experiment, it was confirmed that the performance of the model trained by randomly masking some of the trades with the above-average trade value in this method was the best and appeared stably. It was found that most of the results of potential export candidates for Korea derived through the above model appeared appropriate through additional investigation. Combining the above, this study could suggest the practical utility of the link prediction method applying Node2vec and Light GBM. In addition, useful implications could be derived for weight update strategies that can perform better link prediction while training the model. On the other hand, this study also has policy utility because it is applied to trade transactions that have not been performed much in the research related to link prediction based on graph embedding. The results of this study support a rapid response to changes in the global value chain such as the recent US-China trade conflict or Japan's export regulations, and I think that it has sufficient usefulness as a tool for policy decision-making.

Semi-automatic Data Fusion Method for Spatial Datasets (공간 정보를 가지는 데이터셋의 준자동 융합 기법)

  • Yoon, Jong-chan;Kim, Han-joon
    • The Journal of Society for e-Business Studies
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    • v.26 no.4
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    • pp.1-13
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    • 2021
  • With the development of big data-related technologies, it has become possible to process vast amounts of data that could not be processed before. Accordingly, the establishment of an automated data selection and fusion process for the realization of big data-based services has become a necessity, not an option. In this paper, we propose an automation technique to create meaningful new information by fusing datasets containing spatial information. Firstly, the given datasets are embedded by using the Node2Vec model and the keywords of each dataset. Then, the semantic similarities among all of datasets are obtained by calculating the cosine similarity for the embedding vector of each pair of datasets. In addition, a person intervenes to select some candidate datasets with one or more spatial identifiers from among dataset pairs with a relatively higher similarity, and fuses the dataset pairs to visualize them. Through such semi-automatic data fusion processes, we show that significant fused information that cannot be obtained with a single dataset can be generated.

Major Class Recommendation System based on Deep learning using Network Analysis (네트워크 분석을 활용한 딥러닝 기반 전공과목 추천 시스템)

  • Lee, Jae Kyu;Park, Heesung;Kim, Wooju
    • Journal of Intelligence and Information Systems
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    • v.27 no.3
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    • pp.95-112
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    • 2021
  • In university education, the choice of major class plays an important role in students' careers. However, in line with the changes in the industry, the fields of major subjects by department are diversifying and increasing in number in university education. As a result, students have difficulty to choose and take classes according to their career paths. In general, students choose classes based on experiences such as choices of peers or advice from seniors. This has the advantage of being able to take into account the general situation, but it does not reflect individual tendencies and considerations of existing courses, and has a problem that leads to information inequality that is shared only among specific students. In addition, as non-face-to-face classes have recently been conducted and exchanges between students have decreased, even experience-based decisions have not been made as well. Therefore, this study proposes a recommendation system model that can recommend college major classes suitable for individual characteristics based on data rather than experience. The recommendation system recommends information and content (music, movies, books, images, etc.) that a specific user may be interested in. It is already widely used in services where it is important to consider individual tendencies such as YouTube and Facebook, and you can experience it familiarly in providing personalized services in content services such as over-the-top media services (OTT). Classes are also a kind of content consumption in terms of selecting classes suitable for individuals from a set content list. However, unlike other content consumption, it is characterized by a large influence of selection results. For example, in the case of music and movies, it is usually consumed once and the time required to consume content is short. Therefore, the importance of each item is relatively low, and there is no deep concern in selecting. Major classes usually have a long consumption time because they have to be taken for one semester, and each item has a high importance and requires greater caution in choice because it affects many things such as career and graduation requirements depending on the composition of the selected classes. Depending on the unique characteristics of these major classes, the recommendation system in the education field supports decision-making that reflects individual characteristics that are meaningful and cannot be reflected in experience-based decision-making, even though it has a relatively small number of item ranges. This study aims to realize personalized education and enhance students' educational satisfaction by presenting a recommendation model for university major class. In the model study, class history data of undergraduate students at University from 2015 to 2017 were used, and students and their major names were used as metadata. The class history data is implicit feedback data that only indicates whether content is consumed, not reflecting preferences for classes. Therefore, when we derive embedding vectors that characterize students and classes, their expressive power is low. With these issues in mind, this study proposes a Net-NeuMF model that generates vectors of students, classes through network analysis and utilizes them as input values of the model. The model was based on the structure of NeuMF using one-hot vectors, a representative model using data with implicit feedback. The input vectors of the model are generated to represent the characteristic of students and classes through network analysis. To generate a vector representing a student, each student is set to a node and the edge is designed to connect with a weight if the two students take the same class. Similarly, to generate a vector representing the class, each class was set as a node, and the edge connected if any students had taken the classes in common. Thus, we utilize Node2Vec, a representation learning methodology that quantifies the characteristics of each node. For the evaluation of the model, we used four indicators that are mainly utilized by recommendation systems, and experiments were conducted on three different dimensions to analyze the impact of embedding dimensions on the model. The results show better performance on evaluation metrics regardless of dimension than when using one-hot vectors in existing NeuMF structures. Thus, this work contributes to a network of students (users) and classes (items) to increase expressiveness over existing one-hot embeddings, to match the characteristics of each structure that constitutes the model, and to show better performance on various kinds of evaluation metrics compared to existing methodologies.

Query-based Answer Extraction using Korean Dependency Parsing (의존 구문 분석을 이용한 질의 기반 정답 추출)

  • Lee, Dokyoung;Kim, Mintae;Kim, Wooju
    • Journal of Intelligence and Information Systems
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    • v.25 no.3
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    • pp.161-177
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    • 2019
  • In this paper, we study the performance improvement of the answer extraction in Question-Answering system by using sentence dependency parsing result. The Question-Answering (QA) system consists of query analysis, which is a method of analyzing the user's query, and answer extraction, which is a method to extract appropriate answers in the document. And various studies have been conducted on two methods. In order to improve the performance of answer extraction, it is necessary to accurately reflect the grammatical information of sentences. In Korean, because word order structure is free and omission of sentence components is frequent, dependency parsing is a good way to analyze Korean syntax. Therefore, in this study, we improved the performance of the answer extraction by adding the features generated by dependency parsing analysis to the inputs of the answer extraction model (Bidirectional LSTM-CRF). The process of generating the dependency graph embedding consists of the steps of generating the dependency graph from the dependency parsing result and learning the embedding of the graph. In this study, we compared the performance of the answer extraction model when inputting basic word features generated without the dependency parsing and the performance of the model when inputting the addition of the Eojeol tag feature and dependency graph embedding feature. Since dependency parsing is performed on a basic unit of an Eojeol, which is a component of sentences separated by a space, the tag information of the Eojeol can be obtained as a result of the dependency parsing. The Eojeol tag feature means the tag information of the Eojeol. The process of generating the dependency graph embedding consists of the steps of generating the dependency graph from the dependency parsing result and learning the embedding of the graph. From the dependency parsing result, a graph is generated from the Eojeol to the node, the dependency between the Eojeol to the edge, and the Eojeol tag to the node label. In this process, an undirected graph is generated or a directed graph is generated according to whether or not the dependency relation direction is considered. To obtain the embedding of the graph, we used Graph2Vec, which is a method of finding the embedding of the graph by the subgraphs constituting a graph. We can specify the maximum path length between nodes in the process of finding subgraphs of a graph. If the maximum path length between nodes is 1, graph embedding is generated only by direct dependency between Eojeol, and graph embedding is generated including indirect dependencies as the maximum path length between nodes becomes larger. In the experiment, the maximum path length between nodes is adjusted differently from 1 to 3 depending on whether direction of dependency is considered or not, and the performance of answer extraction is measured. Experimental results show that both Eojeol tag feature and dependency graph embedding feature improve the performance of answer extraction. In particular, considering the direction of the dependency relation and extracting the dependency graph generated with the maximum path length of 1 in the subgraph extraction process in Graph2Vec as the input of the model, the highest answer extraction performance was shown. As a result of these experiments, we concluded that it is better to take into account the direction of dependence and to consider only the direct connection rather than the indirect dependence between the words. The significance of this study is as follows. First, we improved the performance of answer extraction by adding features using dependency parsing results, taking into account the characteristics of Korean, which is free of word order structure and omission of sentence components. Second, we generated feature of dependency parsing result by learning - based graph embedding method without defining the pattern of dependency between Eojeol. Future research directions are as follows. In this study, the features generated as a result of the dependency parsing are applied only to the answer extraction model in order to grasp the meaning. However, in the future, if the performance is confirmed by applying the features to various natural language processing models such as sentiment analysis or name entity recognition, the validity of the features can be verified more accurately.