• The Journal of Korean Society of Virology
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• v.29 no.2
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• pp.107-118
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• 1999

To characterize the molecular nature of human immunodeficiency virus (HIV)-1, we determined the full-length HIV-1 sequences from cultured peripheral blood mononuclear cells (PBMC) of a Korean long-term nonprogressor (LTNP). Without antiretroviral therapy, the individual has maintained CD4+ T counts over $500/{\mu}l$ from 1989 to 1999. Plasma viral RNA copy was 992 U/ml in 1998. Culture supernatant showed positive from culture days 9. A series of 9 overlapping PCR products were amplified from cultured PBMC and cloned About 9.2 kb from R of 5' LTR to R of 3' LTR was determined by automated sequencing. The G-to-A hypermutations were shown throughout the entire region. As a result of G to A hypermutations, premature stop codon was found in integrase coding region. Though there was no recombination between subtypes over all genomes, TATA box in both LTRs was TAAAA which is detected in subtype E instead of TATAA in subtype B. And, there were nucleotide GC insertion between $NF-{\kappa}B$ I and Sp1 III, and duplication of $TCF-1{\alpha}$ in LTR. We could not find any deletion of amino acid in Nef, Gag, Pol and Env gene. This study is the first report on molecular nature of full genomes of HIV-1 isolated in Korea.

• The Journal of Korean Society of Virology
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• v.30 no.1
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• pp.83-99
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• 2000

A defective HIV-1 helper virus DNA, pHyPC, was assembled by deleting the RNA packaging signal, env, nef and the 3'LTR sequences. HIV-1 like virus particles that carry the HIV-1 receptor, CD4 were generated by co expression of pHyPC and plasmid DNAs encoding different chimeric CD4 proteins. The CD4 particles, sharing the CD4 ectodomain, precisely fused to different membrane anchors. CD4(+) particles specifically bound to HIV-1 Env expressing cells, but any signs of infection into these cells were not detected. Binding was only partially blocked by either polyclonal anti-CD4 antibodies or by high concentrations of soluble CD4. Surprisingly, CD4(+) particles also adsorbed to HeLa, CHO, NIH3T3 and COS-7 cells in the absence of HIV-1 Env expression. Adsorption was comparable in strength and speed to the highly specific CD4-Env interaction. CD4(-) particles exhibited only background levels of binding. Cell binding was CD4. dependent, but it was independent of the cell type from which the CD4(+) particles originated. Interestingly, CD4-dependent/Env-independent binding was only found when CD4 was present on virus particles. This suggests that the micro-environment of CD4 on virus particles uniquely expose this new cell binding activity. Its high affinity could explain in part why infection of Env(+) cells by CD4(+) particles was not detected. Further experiments will be required to evaluate whether this strong membrane interaction could represent one step in the multiple-step viral entry process.

• Journal of Ginseng Research
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• v.43 no.4
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• pp.684-691
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• 2019

Background: We have reported that defective nef and gag genes are induced in HIV-1-infected patients treated with Korean Red Ginseng (KRG). Methods: To investigate whether KRG treatment and highly active antiretroviral therapy (HAART) affect genetic defects in the pol gene, we amplified and sequenced a partial pol gene (p-pol) containing the integrase portion (1.2 kb) by nested PCR with sequential peripheral blood mononuclear cells over 20 years and compared it with those patients at baseline, in control patients, those taking ginseng-based combination therapy (GCT; KRG plus combinational antiretroviral therapy) and HAART alone. We also compared our findings to look for the full-length pol gene (pol) (3.0-kb) Results: Twenty-patients infected with subtype B were treated with KRG for $116{\pm}58months$ in the absence of HAART. Internal deletion in the pol gene (${\Delta}pol$) was significantly higher in the KRG group (11.9%) than in the control group and at baseline; its detection was significantly inhibited during GCT as much as during HAART. In addition, the ${\Delta}pol$ in p-pol significantly depended on the duration of KRG treatment. In pol, the proportion of ${\Delta}pol$ was significantly higher in the KRG group (38.7%) than in the control group, and it was significantly inhibited during GCT and HAART. In contrast, the proportion of stop codon appeared not to be affected by KRG treatment. The PCR success rate was significantly decreased with longer GCT. Conclusion: The proportion of ${\Delta}pol$ depends on template size as well as KRG treatment. HAART decreases the detection of ${\Delta}pol$.

• Structural Engineering and Mechanics
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• v.89 no.1
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• pp.33-46
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• 2024

The present research delves into the analysis of nonlinear free and forced vibrations of porous functionally graded (FG) shallow shells reinforced with oblique stiffeners, which are embedded in a nonlinear elastic foundation (NEF) subjected to external excitation. Two distinct types of PFG shallow shells, characterized by even and uneven porosity distribution along the thickness direction, are considered in the research. In order to model the stiffeners, Lekhnitskii's smeared stiffeners technique is implemented. With the stress function and first-order shear deformation theory (FSDT), the nonlinear model of the oblique stiffened shallow shells is established. The strain-displacement relationships for the system are derived via the FSDT and utilization of the von-Kármán's geometric assumptions. To discretize the nonlinear governing equations, the Galerkin method is employed. The model such developed allows analysis of the effects of the stiffeners with various angles as desired, in addition to the quantitative investigation on the influence of the surrounding nonlinear elastic foundations. To numerically solve the problem of vibrations, the 4th-order P-T method is used, as this method, known for its enhanced accuracy and reliability, proves to be an effective choice. The validation of the present research findings includes a comprehensive comparison with outcomes documented in existing literature. Additionally, a comparative analysis of the numerical results against those obtained using the 4th Runge-Kutta method is performed. The impact of stiffeners with varying angles and material parameters on the vibration characteristics of the present system is also explored. The researchers and engineers working in this field may use the results of this study as benchmarks in their design and research for the considered shell systems.

• Journal of The Korean Society of Grassland and Forage Science
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• v.10 no.1
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• pp.42-47
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• 1990

Silage productivity of 7 corn and 3 sorghum hybrids was determined at two planting dates differing in rice black-streaked dwarf virus (RBSDV) infection rates in the southern part of Korea where RBSDV is prevalent. 1. Percent stand was similar between two planting dates, but that of corn hybrids (85.0-99.5 %) was higher compared with sorghum (59.8-82.3 %). Culm length of corn hybrids at April 23 planting was longer compared with May 20 planting, but that of sorghum hybrids was similar between two planting dates. 2. RBSDV infection rate of corn hybrids at April 23 planting was lower compared with May 20 planting, but sorghum was not infected at both planting dates. Among corn hybrids Suweon 19 was most severely infected, but Suweon 99 was least infected at both planting dates. 3. Percent ear bearing plants and earltotal dry matter (TDM) ratio of corn hybrids at April 23 planting was higher than those of May 20 planting. Among the corn hygrids percent ear beraring plants, ear/TDM ratio of Suweon 19 was lowest at both planting dates due to severe RBSDV infection. Ear/TDM ratio of sorghum hybrids was below 17.8 % due to sterility and partially bud damages. 4. Silage yield at April 23 planting was higher than that at May 20 planting and sorghum hybrids outyielded corn hybrids. Silage yield of Suweon 19 and Jinjuok was lowest due to severe RBSDV infection. 5. Crude protein was similar regardless planting dates, species, and varieties except the lowest P 931. Ether extract at April 23 planting was lower then that at May 20 and corn was lower compared with sorghum hybrids. Crude fiber and nitrogen free extracts(NFE) was similar between planting dates. Crude fiber of corn was lower, but NEF was higher compared with sorghum, but similar among hybrids in a species. 6. In vitro dry matter digestibility (IVDMD) at May 20 planting was higher than that of April 23 planting and corn was higher than sorghum hybrids. Digestible dry matter (DDM) of both corn and sorghum at April 23 planting was higher than that of May 20 planting. At April 23 planting DDM of all corn and sorghum hybrids was similar, but DDM of Suweon 19 and Jinjuok was lower than other corn and sorghum hybrids.