• Animal Systematics, Evolution and Diversity
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• 제39권3호
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• pp.99-113
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• 2023

The nudibranch is one of the most colorful gastropod species found in oceans worldwide. Unlike many other gastropod groups, the nudibranch loses an external shell in the adult stage, but instead develops various chemical defense systems. More than 2,500 nudibranch species have been reported worldwide, and 73 species are currently recorded in Korean waters. In this study, we present morphological descriptions, DNA barcode information of mtDNA cox1 sequence, and taxonomic review for five nudibranch species: Apata pricei (MacFarland, 1966), Doto rosacea Baba, 1949, Janolus toyamensis Baba and Abe, 1970, Polycera abei (Baba, 1960), and Trinchesia sibogae (Bergh, 1905). Of these, we also provide in-depth discussion of taxonomic issue of A. pricei that was previously subdivided into two subspecies, A. pricei pricei and A. pricei komandorica. Our morphological examination and molecular analyses of the mtDNA cox1 sequences indicate that these two subspecies are not taxonomically warranted. The phylogenetic information for the other nudibranch species from mtDNA cox1 sequence analysis is also included, providing a molecular basis for species identification and inferring their local phylogenies within each of the species groups discussed herein.

• 한국식품위생안전성학회지
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• 제8권1호
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• pp.55-61
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• 1993

토양을 비롯하여 어류, 패류, 조류, 포유류의 소화기관으로부터 Clostridium botulinum 분리를 시도하였다. 총 158개 분리원을 screening한 결과 10개 시료로부터 Clostridium botulinum 분포 가능성을 확인하였으며 6개 시료로부터 Clostridium botulinum을 순수 분리하여 3.8% 분리율을 나타내었다. 분리 균주의 형태적 특징, 배양상의 특성 및 생화학적 특성 등을 표준 균주의 특성과 비교하고 항혈청에 의한 중화시험을 실시하여 분리균주를 동정하였다. Egg york agar에서의 opalescence 생성, 탄수화물 이용성, Egg york GAM 배지상에서의 pearly layer 생성 등으로부터 Clostridium botulinum으로 동정할 수 있었으며 trypsin에 의한 toxicity 활성화, type E 항혈청에 의한 opalescence 생성억제 및 mouse 방어효과가 인정되어 type E 로 동정하였다. 국내에서 시판되고 있는 수 종의 식품을 대상으로 Clostridium botulinum 의 toxin 생성능을 비교하였던 바 식품의 종류, 사용균주에 따라 toxin 생성량에 현저한 차이가 있었다. 분리균주 type E 의 경우 어패류통조림, ham 식품에서 많은 양의 toxin 이 생성되었으며 sausage, 과일통조림 식품에서는 비교적 적었다. 그러나 type A 의 경우에는 어패류, ham , sausage 식품에서 상당량의 toxin 이 생성되었으며 과일통조림에서도 비교적 맣은 양의 toxin이 생성되었다 .

• Mycobiology
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• 제48권3호
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• pp.184-194
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• 2020

Macrofungi play important roles in forest ecology as wood decayers, symbionts, and pathogens of living trees. For the effective forest management, it is imperative to have a comprehensive overview of macrofungi diversity in specific areas. As a part of the National Institute of Biological Resources projects for discovering indigenous fungi in Korea, we collected macrofungi in Gayasan National Park from 2017 to 2018. These specimens were identified based on morphological characteristics and sequence analysis of internal transcribed spacer (ITS) or the nuclear large subunit rRNA (LSU) region. We discovered 17 macrofungi new to Korea: Butyrea japonica, Ceriporia nanlingensis, Coltricia weii, Coltriciella subglobosa, Crepidotus crocophyllus, Cylindrobasidium laeve, Fulvoderma scaurum, Laetiporus cremeiporus, Lentinellus castoreus, Leucogyrophana mollusca, Marasmius insolitus, Nidularia deformis, Phaeophlebiopsis peniophoroides, Phanerochaete angustocystidiata, Phlebiopsis pilatii, Postia coeruleivirens, and Tengioboletus fujianensis. We described their detailed morphological characteristics.

• 한국패류학회지
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• 제27권4호
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• pp.395-400
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• 2011

Phylogenetic analyses on the Phylum Mollusks has so far been conducted by many researchers in the world. However, there was no report on taxonomic analysis on Acila divaricata vigila which is belonging to Class Bivalvia, Subclass Protobranchia. In this study, we performed molecular phylogenetic analysis on Acila divaricata vigila using 16S rRNA sequence through maximum likelihood method. As a result, it is clearly divided into the legion of mollusk classification unit (when you zoom in order) and represented to support the current classification in the Phylum Mollusca belong to Class Bivalvia, Subclass Protobranchia, Subclass Pteriomorphia, Subclass Paleoheterodonta, Subclass Heterodonta and Subclass Anomalodesmacea. To our knowledge, this is the first report of molecular phylogenetic analysis on Acila divaricata vigila using 16S rRNA gene and these data suggests that 16S rRNA gene will be useful for analyzing the phylogenetic relationship of Subclass Protobranchia.

• 한국패류학회지
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• 제26권1호
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• pp.19-31
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• 2010

Seogundo is a small island adjacent to the southern coast of Jeju Island and connected to it by a boulder beach at low tide Surveys of this area were conducted from 2001 to 2009 to enumerate the mollusks there and also to examine their diversity, relative abundance, and ecological relationships. Both the boulder beach itself and several large tide pools were studied, including the coarse sand substrate and several species of seaweed and coralline algae found in the tide pools. Of the 121 species obtained or observed, there were 97 gastropods, 16 bivalves, and 8 polyplacophorans. Live specimens were obtained for about half of those species. About one third were found on rocky substrate, with the most common species being Nodilittorina radiata and Nerita japonica in the upper intertidal zone, N. radiata and Littorina brevicula in the middle intertidal, and Turbo (Lunella) coronata coreensis and Acanthopleura japonica in the lower intertidal and shallow subtidal. The seaweeds and coralline algae contained about 40% of all mollusk species. The most common mollusks in two species of brown seaweed were Ittibittum parcum, Musculus nanus, and Euplica scripta. In a species of red seaweed, Komaitrochus pulcher was the most frequent, as in the coralline algae, along with M. nanus. The coarse sand in the tidepools contained about 25% of the species, with the Cerithiidae having the largest number. A sample of beach drift contained 17 species, with Bittium aleutaceum and Rissoina (Phosinella) pura being most common. Most species, about 60%, were found in a variety of habitats, especially the marine flora; few species exhibited any habitat preferences. Biographically, Jeju Island is part of the Warm Temperate Northwest Pacific Province and the East China Sea ecoregion with a strong faunal affinity with southern Japan, eastern China, and northeastern Taiwan. Zonal-geographical groupings reveal that the fauna is mainly subtropical-low boreal, preferring moderately warm water, with a somewhat smaller number of tropical-subtropical species.

• 환경위생공학
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• 제14권4호
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• pp.50-68
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• 1999

The present study was performed to examine on the fauna and standing crops of benthic macroinvertebrates in Pongwha and Youngwol region of upper parts of south han river and Naktons river. The Actual site suvry was caried out on the two times during the April·June to October·November, 1988. Main five areas are Mt. Awrawe(1,067m), Mt. Sontal (1,236m), Mt. Munsu(1,206m), Peak Okyopong(357m) and Mt. Pungnak(760m) area. Total taxa of benthic macroinvertebrates of the study area were 118 species, 45families12 orders, 5 classes in 4 phyla. Occurrence species according to the major taxa of aquatic insects were 35 species (29.66%) in ephemeroptera, 25 species(21.19%) in trichoptera, 25 species(21.19%) hemiptera, 1 species(0.85%) in megaloptera. Non-aqautic insect were 5 species in mollusca, 3 ratio was 8.5 percent. Occurrence species(plecoptera) at clean waters were appeared 12 species at Mt. Awrawe and Sontal area. Occurrence species at each survey area was 67 species at Mt. Awrawe area, 60 species at Mt. Sontal area, 43 species at Mt. Munsu area, 37 species at Mt. P'ungnak area and 34 species at Peak Okyo area, respectively. Species diversity indices were 2.96~3.80 at Mt. Awrawe area, 2.79~3.62 at Mt. sontal area, but 2.64~3.12, 1.59~2.46 and 1.98~2.59 at, Mt. Munsu, P'ungnak and Peak Okyo area, respectively. In this region, occurrence species and individual density were smaller than that of Dong river with good habitat, but those were more abundant than that of Poseong river with similar environment conditions. Therefore, occurrence species and individual density of the present survey region were appeared as somewhat abundant.

• 한국패류학회지
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• 제31권3호
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• pp.243-247
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• 2015

A stand-alone BLAST server is available that provides a convenient and amenable platform for the analysis of molluscan sequence information especially the EST sequences generated by traditional sequencing methods. However, it is found that the server has limitations in the annotation of molluscan sequences generated using next-generation sequencing (NGS) platforms due to inconsistencies in molluscan sequence available at NCBI. We constructed a web-based interface for a new stand-alone BLAST, called PANM-DB (Protostome DB) for the analysis of molluscan NGS data. The PANM-DB includes the amino acid sequences from the protostome groups-Arthropoda, Nematoda, and Mollusca downloaded from GenBank with the NCBI taxonomy Browser. The sequences were translated into multi-FASTA format and stored in the database by using the formatdb program at NCBI. PANM-DB contains 6% of NCBInr database sequences (as of 24-06-2015), and for an input of 10,000 RNA-seq sequences the processing speed was 15 times faster by using PANM-DB when compared with NCBInr DB. It was also noted that PANM-DB show two times more significant hits with diverse annotation profiles as compared with Mollusks DB. Hence, the construction of PANM-DB is a significant step in the annotation of molluscan sequence information obtained from NGS platforms. The PANM-DB is freely downloadable from the web-based interface (Malacological Society of Korea, http://malacol.or/kr/blast) as compressed file system and can run on any compatible operating system.

• 수산해양교육연구
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• 제28권1호
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• pp.211-220
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• 2016

Species composition of aquatic organism in the marine ranching area of Gunsan, Korea were investigated using shrimp beam trawl from May to December in 2010. A total of 91 species, $98,127ind./km^2$ and $877.6kg/km^2$ of aquatic organism were collected. Among them, species were included 60 species in Pisces, 21 in Crustacea and 10 in Mollusca. The individual dominant species, occupying over 10% of total individuals, were Latreutes anoplonyx($47,327ind/km^2$, 48.23%), Crangon hakodatei($11,578ind./km^2$, 11.80%) and Trachysalambria curvirostris($10,237ind./km^2$, 10.40%). And the biomass dominant species, occupying over 9% of total biomass, were Paralichthys olivaceus($135kg/km^2$, 15.4%), Okamejei kenojei($98.2kg/km^2$, 11.2%) and Portunus tribuberculatus($84.8kg/km^2$, 9.6%). From the cluster and MDS analysis based on Bray-Curtis similarity matrix of fourth root transformed data of number of species and individuals per unit area collected more than two times during this survey by each month and station was divided into three different groups. Group A showed seasonal similarity of characteristic of distribution in August and November, Group B in December and Group C in May.

• 환경위생공학
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• 제21권2호
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• pp.20-29
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• 2006

Analysis of benthic macroinvertebrate community and biological estimation of water quality by the benthic macroinvertebrates were conducted at Olympic Park at its nearby waters in Seoul from December, 2004 to September, 2005. The benthic macrovertebrates were 49 species. Among them, 39 species of aquatic insects were included 11 species in odonata, 9 species in diptera, 7 species in hemiptera, 6 species in coleoptera, 3 species in ephemeroptera, 2 species in trichoptera and 1 species in lepipdoptera, and 10 species of non-insects were 6 species in mollusca, 2 species in hirudinea and 2 species in oligochaeta. Species number of lakes, Seongnae Stream within and outside the Olympic Park was 25 species, 35 species and 33 species, respectively. Individual number of lakes, Seongnae Stream within and outside the Olympic Park was $131\;inds/2.5m^2\;239\;inds/2.5m^2\;556\;inds/2.5m^2$, respectively. Mean dominance indices of lakes, Seongnae Stream within and outside the Olympic Park was 0.74, 0.61 and 0.72, respectively. According to the saprobic system based on the ESB index(Ecological score of benthic macroinvertebrate community), all survey sites are $\beta-mesosaprobic$ waters. To increase of abundance of benthic macroinvertebrates, regular interval monitoring has to be enforced and standard of water quality for the ecological ponds of Olympic Park has to be prepared.

• 수산해양기술연구
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• 제51권4호
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• pp.493-503
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• 2015

Species composition and bycatch rate of the catches by dredge with bycatch reduction device to reduce bycatch were estimated around Yeongil Bay, Korea at June, 2015. Total catches were collected 31 species as Chordata 10 species, mollusca 8 species, arthropoda 6 species, echinodermata 5 species, sipunculida 1 species, annelida 1 species during the experiment at the Yeongil Bay. The dominant species were Scapharca broughtonii, Callithaca adamsi, and Atrina pectinata and they reached 79.9% of the total catch. The catch rate of Scapharca broughtonii and Callithaca adamsi was 69.6% and 10.4% respectively. The rate of bycatch was 20.1%, consisted with Echinodemata 13.0%, Chordata 3.6%. The catch of ordinary dredge was 27 species 1,307 number 85,052g and that of dredge with escapement device was 21 species 1,690 number 91,648g. In conclusion, the dredge gear with bycatch reduction device has higher catch rate of target species and lower bycatch rate to non-target species than ordinary one.