• 한국식품저장유통학회지
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• 제5권1호
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• pp.97-104
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• 1998

The chemical structure of low molecule polyphenol of tea was found as explained. Structure decision of pioanthocyanidin was possible to measure 1,700 molecule, hexamer by chemical basic of polyphenol. At present, structure of high molecule than of that can't be suspected and it is concemed that strong astrigent ccnpound of tea is polymer proanthocyanidin. Mush researches was required in structure decision and isolation of high molecule polyphenol complex. Structure decision will develope at the natural products in the furture.

• 반도체디스플레이기술학회지
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• 제7권3호
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• pp.35-39
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• 2008

We study the interaction of acetone molecule $[(CH_3)_2CO]$ on Si(001) surface using density functional theory. An acetone molecule is adsorbed on a Si atom of the Si dimer of the Si(001) surface. The adsorption of the acetone molecule on the Si atom at lower height between the two Si atoms of the dimer is more favorable than that on the Si atoms at upper height. Then we calculate an energy variation of dissociation and four-membered ring structures of the acetone molecule adsorbed on the Si surface. Total energy difference between the two structures is about 0.05 eV, indicating that the two structures are almost equally stable. Energy barrier exists when a hydrogen atom is dissociated and adsorbed on the other Si atom of the dimer, while energy barrier does not exist when the adsorbed acetone molecule changes to four-membered ring structure, except for the rotation of the acetone molecule along z-direction. Therefore, four-membered ring structure is kinetically more favorable than the dissociation structure when the acetone molecule is adsorbed on the Si(001) surface.

• EDISON SW 활용 경진대회 논문집
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• 제3회(2014년)
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• pp.409-411
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• 2014

Based on the first-principles computations, the nature of the microscopic geometry of the molecule-electrode contacts was addressed. The single-molecule junction was prepared by connecting hexanediothiolate (HDT) to Au(111) electrodes via one, two, and three Au adatoms having coordination number of one (CN1), two (CN2), and, three (CN3), respectively. The contact atomic structure and energy of the stretched Au-HDT-Au junction was observed. The analysis revealed that the contact geometry with lowest coordination number (CN1) is energetically more stable than CN2 and CN3.

• 정보처리학회논문지:소프트웨어 및 데이터공학
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• 제3권4호
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• pp.163-168
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• 2014

단백질 분자 내에서 ${\alpha}$-헬릭스는 단백질의 구조나 기능, 그리고 다른 단백질과의 결합, 활성 조절 등에 있어 중요한 역할을 하며, 이에 따라 헬릭스에 대한 구조적인 분석이 연구되어 왔다. ${\alpha}$-헬릭스는 그 중심축을 기준으로 다른 ${\alpha}$-헬릭스와의 상호위치를 평가하기 때문에 길게 휘어지거나 꺾인 ${\alpha}$-헬릭스들을 한 개의 헬릭스로 해석할 경우에는 단백질의 구조 분석에 있어서 상당한 오차가 발생할 수 있다. 본 논문에서는 PDB 파일 내에 표시된 단백질 분자의 ${\alpha}$-헬릭스를 주어진 오차 범위 내에서 여러 개의 곧은 형태의 헬릭스로 재구성하는 알고리즘을 제안한다.

• Archives of Pharmacal Research
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• 제13권2호
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• pp.166-173
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• 1990

The structure of the anti-inflammatory agent, naproxen sodium was determined by single crystal X-ray diffraction analysis. Crystal of the compound, which was recrystallized from methanol solution, is nomoclinic, space group $P2_1$ with a = 21. 177(6), b = 5.785(2), c = 5.443(2) $\AA, \beta$ = 91.41(3)$\{\circ}$ and Z = 2. The calculated density is 1.346; the observed value is nements based on 1093 reflections ($F\geq3\sigma$(F)) gave the final R value of 0.043. There are of one water per one compound molecule in the crystal. The carboxyl group of the molecule is nearly perpendicular to the naphthalene ring. The molecules are arranged along with the screw axis, and stabilized by five 0...Na type interactions. The molecule retains nearly same dimensions and similar conformation compared to its parent compound, naproxen, except for the torsion angles around C(5)-C(11) bond.

• 대한화학회지
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• 제14권1호
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• pp.123-126
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• 1970

The approximate crystal structure of benzidine monoperchlorate has been determined by single crystal X-Ray diffraction technique and patterson method. As the molecule has a center of symmetry in it and location of perchlorate ion is symmetrically on the mirror plane in the unit cell, perchlorate ion is forming hydrogen bond with two -$NH_2$ groups in the different molecule. Thus, one molecule of benzidine and perchloric acid combines 1:1 by mole ratio.

• Bulletin of the Korean Chemical Society
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• 제29권10호
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• pp.1951-1959
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• 2008

Pentamer cluster of azodicarbonamide (ADA) based on the crystalline structure was investigated for the equilibrium structure, the stabilization energies, and the vibrational properties at various levels of the density functional theory. Stretching force constants of N${\cdot}{\cdot}{\cdot}$H or O${\cdot}{\cdot}{\cdot}$H, and angle-bending force constants of N-H${\cdot}{\cdot}{\cdot}$N or N-H${\cdot}{\cdot}{\cdot}$O for intermolecular hydrogen bonds in the pentamer cluster were obtained in 0.2-0.5 mdyn/$\AA$ and 1.6-2.0 mdyn$\AA$, respectively. The geometry of central ADA molecule fully hydrogen bonded with other four molecules shows good coincidence to the crystalline structure except the bond distances of N-H. Calculated Raman and infrared spectra of central ADA molecule in cluster represent well the experimental spectra of ADA obtained in the solid state compared to a single molecule. Detailed structural and vibrational properties of central ADA molecule in the pentamer cluster are presented.

• 한국콘텐츠학회논문지
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• 제10권10호
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• pp.172-179
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• 2010

물질에 대한 본질과 그 안에 내재된 시지각적 구조에 대한 관심으로부터 시작된 본 작품연구의 목적은 분자의 형태상 특징인 원, 선과 같은 단순기하형을 시공간에서 입체화시켜 이들 간의 결합이 갖은 조형적 연속성을 표현하는데 있다. 이와 같은 목적으로 현대미술에서의 기하형태는 무엇이며, 분자구조의 구조적 결합과 상징성이 어떠하였는가를 살펴보았으며, 이러한 고찰을 바탕으로 분자구조의 단순기하형태를 입체화시켜 단위체간의 반복적인 결합에서 오는 연속적인 조형성을 표출하였다. 작업의 유형은 분자모형과 전자현미경상에서 보이는 분자를 선을 매개체로 사용하여 단위체를 결합하는 방법과 단위체간을 직접 결합하는 방법으로 신체장신구와 금속조형물을 표현해 보았다. 결국은 단위체간의 직접결합을 통한 "분할과 복제의 연속성" 및 구와 곡선과 같은 분자이미지를 입체화 시킨 단순기하형들의 결합에서 오는 "순환적 연속성"이 공간적 구성에서 발생하는 조형화를 시도해 보았다.

• Molecules and Cells
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• 제45권1호
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• pp.33-40
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• 2022

The various DNA-protein interactions associated with the expression of genetic information involve double-stranded DNA (dsDNA) bending. Due to the importance of the formation of the dsDNA bending structure, dsDNA bending properties have long been investigated in the biophysics field. Conventionally, DNA bendability is characterized by innate averaging data from bulk experiments. The advent of single-molecule methods, such as atomic force microscopy, optical and magnetic tweezers, tethered particle motion, and single-molecule fluorescence resonance energy transfer measurement, has provided valuable tools to investigate not only the static structures but also the dynamic properties of bent dsDNA. Here, we reviewed the single-molecule methods that have been used for investigating dsDNA bendability and new findings related to dsDNA bending. Single-molecule approaches are promising tools for revealing the unknown properties of dsDNA related to its bending, particularly in cells.

• 대한화학회지
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• 제57권6호
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• pp.721-725
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• 2013

Reaction between 2-pyridinecarboxylic acid (Hpic) and $K_3[Cr(O_2)_4]$ give complex $[Cr(pic)_3].H_2O$ (1) which is characterized by elemental analysis and spectroscopic methods (FT-IR, Raman) and X-ray crystallography. In the crystal structure of 1, chromium atom with coordinated by three nitrogen and three oxygen atoms has a distorted octahedral geometry. Also a water molecule is incorporated in crystal network. Each water molecule acts as hydrogen bond bridging and connects two adjacent complexes by two $O-H{\cdots}O$ hydrogen bonds.