• Journal of Korean Society on Water Environment
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• v.33 no.6
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• pp.728-735
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• 2017

Many restoration projects are underway to revive disturbed streams. In order to achieve successful stream restoration, a variety of microhabitats should be created to promote biological diversity. Research on biological classification of microhabitats is essential for biological diversity. However, research on classification using only physical environmental factors has been carried out. The purpose of this study is to classify and quantify the microhabitat of the stream by using macroinvertebrates systematically. In this study, eight wadeable streams and four non-wadeable streams were surveyed to identify the benthic macroinvertebrates in these various microhabitats. Among the physical environmental factors (current velocity, water depth, substrate), the particle size of the substrate was the most influential factor in the emergence of the Habitat Orientaion Groups. Among the HOGs, clinger and burrower were highly correlated with physical environment factors and showed the opposite tendency. The distribution of clinger and burrower according to the physical environmental factors showed two tendencies based on the current velocity (0.3 m/s) and water depth (0.4 m). In addition, the particle size of the substrate showed three trends (${\leq}-5.0$, -5.0 < mean diameter ${\leq}-2.0$, > -2.0). Based on the abundance tendency of these two HOGs, the microhabitats were classified into nine types, from a eupotamic microhabitat to a lentic microhabitat. Classification of the microhabitats using HOGs can be employed for creating microhabitats to promote biological diversity in future stream restoration plans.

• Journal of Ecology and Environment
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• v.29 no.5
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• pp.415-424
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• 2006

The main objective of this study is to find out the fauna of macroinvertebrate and composition of functional feeding groups about the aquatic insects to microhabitat from the Geum River, Korea. This study is based on investigations of the main channel of Geum River, Korea which is upstream of Daecheong Dam, and carried out in the spring and autumn of 2004. Collections from all the sites were 39,532 individuals, 130 species, 54 families, 16 orders, 7 classes, and 4 phyla of macroinvertebrates. Aquatic insects were composed of 90.76% (118 species) and 98.88% (39,088 individuals) of all the identified species. Among the microhabitats, the riffles were collected 26,293 individuals and 92 species, and the runs were collected 12,329 individuals and 89 species. Finally, the pools were collected 494 individuals and 41 species. In this survey, the proportions of functional feeding groups of aquatic insects were as follows (percent of identified): predators 37.65%, gathering-collectors 23.53%, scrapers 16.47%, filtering-collectors 11.76%, shredders 9.41% and plant-piercers 1.18%. Also, the functional feeding groups were sorted according to microhabitat, in the riffles 30.65% were predators and 29.03% were gathering-collectors; in the run 30.3% were predators, and 28.79% were gathering-collectors; while in the pools 36.67% were predators, and 30.0% were gathering-collectors. In all microhabitats, gathering collectors and predators were predominant, because most of the survey sites are in the midstream. Also, the scrapers were shown more frequently in the riffle (17.74%) and run (18.18 %) than pool (13.13%), the filtering-collectors were shown more frequently in the riffle (14.52%) and the run (12.12%) than the pool (6.67%), and the plant-piercers (3.33%) were found only in pools. But the shredders weren't a difference in the run (10.61%), the pool (10.0%) and the riffle (8.06%), because of the characteristic. Microhabitats (riffle and run) are much alike in composition ratio of functional feeding groups and pool was very lower out of composition ratio in microhabitats. But riffle is very important than run, because most of individual occur in streams. Besides, pool was diverse to composition ratios, considering the number of individuals.

• Journal of Microbiology and Biotechnology
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• v.24 no.8
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• pp.1034-1043
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• 2014

This study determined the effect of light intensity and photoperiod on the dry cell weight and total amount of carotenoids in four isolates of purple non-sulfur bacteria obtained from shaded and exposed microhabitats of a mangrove ecosystem in Kota Kinabalu, Sabah, Malaysia. The initial isolation of the bacteria was carried out using synthetic 112 medium under anaerobic conditions (2.5 klx) at $30{\pm}2^{\circ}C$. On the basis of colony appearance, cell morphology, gram staining, motility test, and 16S rRNA gene sequencing analyses, all four bacteria were identified as Afifella marina. One of the bacterial isolates, designated as Af. marina strain ME, which was extracted from an exposed mud habitat within the mangrove ecosystem, showed the highest yield in dry cell weight ($4.32{\pm}0.03g/l$) as well as total carotenoids ($0.783{\pm}0.002mg/g$ dry cell weight). These values were significantly higher than those for dry cell weight ($3.77{\pm}0.02g/l$) and total carotenoid content ($0.706{\pm}0.008mg/g$) produced by the isolates from shaded habitats. Further analysis of the effect of 10 levels of light intensity on the growth characteristics of Af. marina strain ME showed that the optimum production of dry cell weight and total carotenoids was achieved at different light intensities and incubation periods. The bacterium produced the highest dry cell weight of 4.98 g/l at 3 klx in 72 h incubation, but the carotenoid production of 0.783 mg/g was achieved at 2.5 klx in 48 h incubation. Subsequent analysis of the effect of photoperiod on the production of dry cell weight and total carotenoids at optimum light intensities (3 and 2.5 klx, respectively) revealed that 18 and 24 h were the optimum photoperiods for the production of dry cell weight and total carotenoids, respectively. The unique growth characteristics of the Af. marina strain ME can be exploited for biotechnology applications.

• The Korean Journal of Ecology
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• v.18 no.1
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• pp.1-15
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• 1995

Alakline phosphatase activity (AP A) as a phosphorus deficiency measurement in flowing waters and of microhabitats (rocks, wood, leaves, and sediments) was measured and its relationship to flux of nutrients and response to rainfall events were determined for two geologically different streams in west Alabama from August to November. Results indicated water column AP A in both streams had a low correlation with levels of orthophosphate, total organic phosphorus, nitrate, ammonia, dissolved organic carbon, and discharge (r=0.075-0.583; n=g-IU. Communities on rock surfaces showed a higher AP A level than those on wood and leaves. Sediment passed through a $106{\mu}m$ sieve showed 2-9 times higher AP A level than material passed through $425{\mu}m$ sieve. The first storm after drought at Yellow Creek introduced substantial quantities of DOC (2.5 times baseflow concentrations) and $N0_3-N$ (5.8 times baseflow concentrations) which did not affect AP A significantly. The second storm at Little Schultz Creek caused minor changes in nutrient cocentrations; however $N0_3-N$ levels and AP A were drastically lower due to the dilution effect. Retention of stream water AP A at Yellow Creek and Little Schultz Creek on $0.45{\mu}m$ filter (54 and 43%, respectively) and $0.22{\mu}m$ (83 and 77% of total APA. respectively) indicated more free dissolved portion of the enzyme was present at Little Schultz Creek. Little Schultz Creek (with carbonate and with a higher productivity and biomass) showed a consistantly greater AP A activity $(132{\pm}54\;{\mu}M{\cdot}1^{-1}{\cdot}min^{-I};\;n=g)$ than Yellow Creek $(41{\pm}23\;{\mu}M{\cdot}1^{-I}{\cdot}min^{-I}$, with a sandstone substrate; n=l1, $p{\leq}O.OO1)$. Overall, a greater APA on all microhabitats and the presence of more dissolved enzyme in Little Schultz Creek during the study period may indicates it is more P deficient than Yellow Creek.

• Korean Journal of Ecology and Environment
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• v.47 no.spc
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• pp.74-82
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• 2014

A perennial plant species of Ranunculaceae, Pulsatilla tongkangensis is a very rare species only found in limestone vegetation of South Korea. It is not only rare but also has great value as a horticultural resource, thus resulting in serious problems of overexploitation and habitat disturbance. For the conservation of the rare species and its development as a resource, the study was conducted with the following three aims: first, to investigate any new geographical distribution of the species; second, to identify the site condition and vegetation structure of its habitat; and third, to compare the ecology of P. tongkangensis in other microhabitats such as rock, slope and ridge area. A new distribution was found in limestone vegetation at Danyang-gun, Chungcheongbuk-do. It was, therefore, confirmed that the distribution of P. tongkangensis exactly coincides with the area of distribution of limestone, indicating a possibility that the species might be a calcicole. 87% of the microhabitats found in rocks. Compared to P. tongkangensis, at ridges or slopes, number of P. tongkangensis plants were few in rocks. It is possibly due to the lack of microhabitats that could settle in rocky areas. Once established on rocks, however, plants grew large enough to flower with higher number of leaves and flowers per plant, resulting in higher flowering rate on rocky areas. Cracks in/between rocks are likely to be safe places for the plants with favorable light conditions, abundant fine particles to root down and reduced competition for resources. Yet, further research is necessary in terms of determining whether the species is indeed a calcicole, whether other limiting factors work in its establishment stage, and genetic diversity exists in the population.

• Journal of the Korean Institute of Landscape Architecture International Edition
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• no.2
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• pp.109-113
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• 2004

It is important to consider urban parks and greenery not only from the viewpoint of amenity or aesthetics but also from the viewpoint of biodiversity. In this study, we focused on bryophytes (mosses), and analyzed how existence of artificial structures in urban greeney, such as concrete curbs and stone walls, affect species diversity of bryophytes. Kyoto Gyoen in Kyoto City, western Japan, was selected as the study site. In consideration of kinds of substrates on which bryophytes grow, microhabitats of Kyoto Gyoen were divided into ten types including concrete curbs and stone walls. In each type of microhabitats, we selected the area where bryophyte diversity was highest, and established a quadrat for bryophyte flora survey. Our results showed that the number of bryophyte species and growth forms and the value of diversity indices on concrete curbs or stone walls were higher than the averages of those. The bryophyte species were divided into the four groups by TWINSPAN as follows: Group A (epiphyte species), Group B (rocky species), Group C (roadsides, grassland or forest species), and Group D (waterside species). Bryophytes classified into Group B (rocky species) were mainly recorded on concrete curbs or stone walls. It was considered that the existence of artificial structures (concrete curbs and stone walls) provided favorite habitats for the bryophytes classified into Group B (rocky species), which mainly grows on concrete or rocks, and enhanced species diversity of bryophytes in Kyoto Gyoen.

• Korean Journal of Soil Science and Fertilizer
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• v.33 no.2
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• pp.121-126
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• 2000

Composition of fungal communities in three microhabitats such as soil, rhizosphere and rhizoplane were studied to understand the root environment of healthy and diseased plants in Phytophthora non-infested and infested fields, respectively. Samples were collected from the tomato- and red pepper-growing greenhouses in Kyungsang-Nam Province on April, 1999. Twenty-five species were isolated from each vegetation field using the dilution plate technique. There were a greater variety of species in infested fields than non-infested and in soils than in both rhizospheres and rhizoplanes. The number of species isolated were varied amongst the different microhabitats. A Trichoderma species was isolated only from non-infested fields.

• Journal of Ecology and Environment
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• v.31 no.3
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• pp.201-206
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• 2008

This study was conducted to determine clutch size and habitat usage of Kentish plovers (Charadrius alexandrinus) breeding on Sinja-do lslet in the Nakdong Estuary from 22 April to 12 July in 1995 and from 21 April to 20 June in 1996. The Kentish plover preferred grasslands and damp sands to dry dunes as nesting sites. The difference in hatching success among these microhabitats was attributed to high tides, which washed away many nests on damp sands, and strong winds, which frequently shifted the sand to bury eggs on dry dunes. The main mortality factor in grasslands was predation by magpies Pica pica. Each clutch contained one to four eggs, with a mode of three eggs. Hatching success was highest in two-egg clutches and lowest in one- and four-egg clutches. The mean interval for egg laying was 1.8 days between the first and second eggs and 2.1 days between the second and third eggs. The average incubation period was about 24.2 days.

• Animal Systematics, Evolution and Diversity
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• v.33 no.1
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• pp.56-59
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• 2017

The external anatomy of the immature stages (last instar larva and pupa) of the crane fly, Tipula (Nippotipula) sinica Alexander, 1935 (Diptera: Tipulidae) is described and illustrated from specimens first collected in Korean peninsula (South Korea). Comments concerning natural history and microhabitats of larvae are provided. This is the first detailed description with illustrations for the last instar larva and pupa of Tipula (Nippotipula) sinica. Pupal characteristics resemble those of most species from advanced lineages within the subfamily Tipulinae. And, also it described with habitats and biological notes of Tipula (Nippotipula) sinica. Crane fly larvae, categorization as found in this survey indicate a taxonomic stream and are expected to help.

• Animal cells and systems
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• v.4 no.1
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• pp.57-62
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• 2000

Soil samples were collected in thirteen Manitoba boreal forest sites. Spatial distribution of chytrids from diverse boreal forest microhabitats was investigated by baiting with jack pine pollen. After baiting, the pollen was surveyed for chytrids for 8 ten day period and individual species were counted. Total infestations of pollen by chytrids ranged from 5.8% to 90.2% from various soils. Each site with high infestation was characterized by litter with high needle content while mineral soil or soil with limited organic matter yielded low levels of pollen infestation. Species diversity tended to be higher in soils with higher pollen infestation and lower in soils with lower pollen infestation. Lower diversity was generally observed in mineral soils or soils with a limited organic horizon comprised, in part, of broad leaf litter. Based on coefficients of association and species in common among species across the collection sites, it was possible to relate dominant species assemblages in site groups. These species assemblages in the site groups suggest that the chytrids are distributed by litter and soil types. It can be concluded that the substratum characteristics of litter types and availability of litter may be important in describing chytrid distribution in boreal forest sites.