• Title/Summary/Keyword: Micro-array data

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Pathway Analysis in HEK 293T Cells Overexpressing HIV-1 Tat and Nucleocapsid

  • Lee, Min-Joo;Park, Jong-Hoon
    • Journal of Microbiology and Biotechnology
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    • v.19 no.10
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    • pp.1103-1108
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    • 2009
  • The human immunodeficiency virus (HIV)-l protein Tat acts as a transcription transactivator that stimulates expression of the infected viral genome. It is released from infected cells and can similarly affect neighboring cells. The nucleocapsid is an important protein that has a related significant role in early mRNA expression, and which contributes to the rapid viral replication that occurs during HIV-1 infection. To investigate the interaction between the Tat and nucleocapsid proteins, we utilized cDNA micro arrays using pTat and flag NC cotransfection in HEK 293T cells and reverse transcription-polymerase chain reaction to validate the micro array data. Four upregulated genes and nine downregulated genes were selected as candidate genes. Gene ontology analysis was conducted to define the biological process of the input genes. A proteomic approach using PathwayStudio determined the relationship between Tat and nucleocapsid; two automatically built pathways represented the interactions between the upregulated and downregulated genes. The results indicate that the up- and downregulated genes regulate HIV-1 replication and proliferation, and viral entry.

Vortex dynamics in YBa$_2Cu_3O_7$ single crystals measured by micro Hall-probe array (Micro Hall probe array를 이용한 YBa$_2Cu_3O_7$ 단결정 내부의 자속 운동 측정)

  • Shim, Seong-Yeop;Hwang, Hyeon-Guk;Lee, Chang-Woo;Lee, Tae-Won;Kim, Dong-Ho
    • 한국초전도학회:학술대회논문집
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    • v.9
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    • pp.189-195
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    • 1999
  • We have studied the vortex dynamics in YBa$_2Cu_3O_7$ single crystals with columnar defects using micro Hall-probe array. The Hall-probe array technique allowed a simultaneous measurement of the time and spatial dependence of the vortex density so that more detailed information on flux dynamics could be obtained. We found that field profiles inside sample were similar to the Bean's critical state model from the magnetic hysteresis measurement. Normalized relaxation rates were maximum near the center and decreased toward the edge if applied field H$_{app}$ is greater than the penetration field H. But applied magnetic field H$_{app}$ is less than H, relaxation rates were minimum near the center and increased toward edge. We found that glassy exponent ${\mu}$ has the value of ${\sim}$ 1 whose corresponding vortex motion is half-loop excitation. However, single vortex creep, ${\mu}$ ${\sim}$ 1/7, was also found at 30 K and H$_{app}$ ${\cong}$ H'. Calculation of activation energy, U, was possible from direct analysis of the local relaxation data using the basic diffusion equation. From these results, we found that U increases logarithmically with time and U around center was lower than that at the edge.

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A Study on the Optical communication part Lid glass manufacture technology by high temperature and compression molding (광통신 부품 Lid glass 고온압축성형의 관한 연구)

  • Jang, K.C.;Lee, D.G.;Jang, H.
    • Proceedings of the KSME Conference
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    • 2007.05a
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    • pp.1526-1531
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    • 2007
  • Data transmission capacity that is required in 2010 is forecasted that increase by optical communication capacity more than present centuple, and is doing increased demand of optical communication related industry product present. Specially, Lid glass' application that is one of optical communication parts is used in optical communication parts manufacture of Fiber array, Ferrule array, Fanout Black, Silica optical waveguide chip and splitter etc. Also, it is used widely for communication network system, CATV, ATM-PON, FTTH and system. But, Lid glass need much processing times and becomes cause in rising prices of optical communication parts because production cost is expensive. The objectives, of this work is to suggest the micro concave and convex pattern manufacturing technology on borosilicate plate using high temperature and compression molding method. As a result, could developed micro pattern Mold more than 5 pattern, and reduce Lid Glass manufacture cycle time.

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pH Measurements with a Microcantilever Array-Based Biosensor System

  • Hur, Shin;Jung, Young-Do
    • Journal of Sensor Science and Technology
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    • v.21 no.3
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    • pp.186-191
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    • 2012
  • In this paper, we present a pH measurement method that uses a microcantilever-array-based biosensor system. It is composed of microcantilever array, liquid cell, micro syringe pump, laser diode array, position sensitive detector, data acquisition device, and data processing software. Four microcantilevers are functionalized with pH-sensitive MHA(mercaptohexadecanoic acid) as a probe, while three microcantilevers are functionalized with HDT(hexadecane thiol) as reference. We prepare PBS(phosphate buffered saline) solutions of different pH and inject them into the liquid cell with a predefined volumetric speed at regular time intervals. The functionalized mircocantilevers in the liquid cell deflect as a self-assembled monolayer on the microcantilever binds with probe molecules in the solution. The difference in deflection between the MHA-covered probe microcantilever and the HDT-covered reference microcantilever was used to compensate for thermal drift. The deflection difference clearly increases with increasing pH in the solution. It was shown that when the pH values of the PBS solutions are high, there were large variations in the deflection of microcantilevers, whereas there were small variations for low pH value. The experimental results show that the microcantilever array functionalized with MHA and HDT can detect pH value with good repeatability.

Neuron-on-a-Chip technology: Microelectrode Array System and Neuronal Patterning (뉴런온칩 기술: 미세전극칩시스템과 신경세포 패터닝 기술)

  • Nam, Yoon-Key
    • Journal of Biomedical Engineering Research
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    • v.30 no.2
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    • pp.103-112
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    • 2009
  • Neuron-on-a-Chip technology is based on advanced neuronal culture technique, surface micropatterning, microelectrode array technology, and multi-dimensional data analysis techniques. The combination of these techniques allowed us to design and analyze live biological neural networks in vitro using real neurons. In this review article, two underlying technologies are reviewed: Microelectrode array technology and Neuronal patterning technology. There are new opportunities in the fusion of these technologies to apply them in neurobiology, neuroscience, neural prostheses, and cell-based biosensor areas.

A Study on the Selectivity of Gas Sensors by Sensing Pattern Recognition (감지 패턴 인식에 의한 가스센서의 선택성 연구)

  • Lee, Sung-Pil
    • Journal of Sensor Science and Technology
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    • v.20 no.6
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    • pp.428-433
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    • 2011
  • We report on the building of a micro sensor array based on typical semiconductor fabrication processes aimed at monitoring selectively a specific gas in ambient of other gases. Chemical sensors can be applied for an electronic nose and/or robots using this technique. Microsensor array was fabricated on the same chip using 0.6${\mu}m$ CMOS technology, and unique gas sensing patterns were obtained by principal component analysis from the array. $SnO_2$/Pt sensor for CO gas showed a high selectivity to buthane gas and humidity. $SnO_2$ sensor for hydrogen gas, however, showed a low selectivity to CO and buthane gas. We can obtain more distinguishable patterns that provide the small sensing deviation(the high seletivity) toward a given analyte in the response space than in the chemical space through the specific parameterization of raw data for chemical image formation.

Effect of Multiple Contact Spots Simulated by Array of Balls on Contact Resistance (볼군의 다수 접촉점이 접촉저항에 미치는 영향)

  • ;Myshkin,N.K.
    • Transactions of the Korean Society of Mechanical Engineers
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    • v.18 no.11
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    • pp.2967-2972
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    • 1994
  • The multiple character of the contact interaction and the collective behavior of elementary microcontacts play a significant role in all the processes occurring in the surface layers, including the failure due to friction and wear. The array of metal spheres compressed between flat plates has been used for simulation of the contact behavior of multiple contact of solids under normal loading. An experimental design has been made providing regular array of the spheres at the same size with different spatial order. Measurement of electrial contact resistance has been made using the equipment providing the adequate accuracy in the range of micro Ohms. The data on electrical contact resistance have been compared with theoretical predictions using the multiple contact model of constriction resistance. The effect of single spots number and array on conductivity of contact has been evaluated.

A Study On Bar-Code Signal Processing System (바-코드 신호처리 시스템에 관한 연구)

  • Ihm, J.T.;Eun, J.J.;Park, H.K.
    • Proceedings of the KIEE Conference
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    • 1987.07a
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    • pp.61-63
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    • 1987
  • In this paper, we develope a system which can perform signal processing for bar-code laser scanner. This system is composed of optical detector and preprocessor. The former detects the diffused light and converts it into TTL lebel output. The latter discriminator valid data from various raw data and transmits data to micro-processor. The preprocessor consists of edge transition detector, latch signal generator, module counter, register array, adder array, and buffer memory control circuit etc..

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Graphical Models for DNA Microarray Data Mining

  • 양진산;장병탁
    • Proceedings of the Korean Society for Bioinformatics Conference
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    • 2002.06a
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    • pp.49-61
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    • 2002
  • 현대적 실험방법 및 유전공학의 발전으로 최근 생물학적 자료는 비약적으로 늘어나고 있다. 이러한 자료의 기계학습을 이용한 분석방법은 많은 비용과 시간을 요구하는 전통적인 생물적 실험에 있어서 실험 시간을 단축시켜주고 실험비용을 줄여 주게 된다. 본 논문에서는 특별히 micro array data의 분석에 있어서 graphical model에 기반한 기계학습 방법들을 소개한다. 이중 GTM 은 특히 시각화 효과가 뛰어난 방법으로 Graphical model 에 기반한 GTM의 제반 특성을 소개하고 이를 yeast data의 분석에 적용시킨 결과를 자세히 알아보고자 한다. (**Presentation file을 수신 보관 중)

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Seismic Noise Reduction Using Micro-Site Array Stacking (미소-위치 배열 중합을 이용한 지진파의 잡음제거)

  • Choi, Hun;Sohn, Sang-Wook;Bae, Hyeon-Deok
    • The Transactions of The Korean Institute of Electrical Engineers
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    • v.63 no.3
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    • pp.395-403
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    • 2014
  • This paper presents a new approach to improve the signal to noise ratio (SNR) for local seismic disaster preventing system in densely populated area. The seismic data measured in the local site includes various sensing noises (offset or measurement noise) and man-made/natural noises (road and rail traffic noise, rotating or hammering machinery noise, human activity noise such as walking and running, wind/atmospheric pressure-generated noise, etc.). These additive noises are different in time and frequency characters. The proposed method uses 3-stages processing to reduce these different additive noises. In the first stage, misalignment offset noise are diminished by time average processing, and then the second and third stages, coherent/incoherent noises such as man-made/natural noises are suppressed by array stacking. In addition, we derived the theoretical equation of the SNR gain improved by the proposed method. To evaluate the performance of the proposed method, computer simulations were performed with real seismic data and test equipment generated data as the input.