• Title/Summary/Keyword: Mapping Diversity

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Prospects of Application of Linkage Disequilibrium Mapping for Crop Improvement in Wild Silkworm (Antheraea mylitta Drury)

  • Vijayan, Kunjupillai;Singh, Ravindra Nath;Saratchandra, Beera
    • International Journal of Industrial Entomology and Biomaterials
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    • v.20 no.2
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    • pp.37-43
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    • 2010
  • The wild silkworm, Antheraea mylitta Drury (Lepidoptera: Saturniidae) is a polyphagous silk producing insect that feeds on Terminalia arjuna, T. tomentosa and Shorea robusta and is distributed in the forest belts in different states of India. Phenotypically distinct populations of the A. mylitta are called "eco-race" or "ecotypes". Genetic improvement of this wild silkworm has not progressed much due to lack of adequate information on the factors that control the expression of most of the economically important traits. Considering the amazing technological advances taking place in molecular biology, it is envisaged that it is now possible to take greater control on these intractable traits if a combination of genetic, molecular and bioinformatics tools are used. Linkage disequilibrium (LD) mapping is one such approach that has extensively been used in both animal and plant system to identify quantitative trait loci (QTLs) for a number of economically important traits. LD mapping has a number of advantages over conventional biparental linkage mapping. Therefore, LD mapping is considered more efficient for gene discovery to meet the challenge of connecting sequence diversity with heritable phenotypic differences. However, care must be taken to avoid detection of spurious associations which may occur due to population structure and variety interrelationships. In this review, we discuss how LD mapping is suitable for the dissection of complex traits in wild silkworms (Antheraea mylitta).

Spatial Physicochemical and Metagenomic Analysis of Desert Environment

  • Sivakala, Kunjukrishnan Kamalakshi;Jose, Polpass Arul;Anandham, Rangasamy;Thinesh, Thangathurai;Jebakumar, Solomon Robinson David;Samaddar, Sandipan;Chatterjee, Poulami;Sivakumar, Natesan;Sa, Tongmin
    • Journal of Microbiology and Biotechnology
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    • v.28 no.9
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    • pp.1517-1526
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    • 2018
  • Investigating bacterial diversity and its metabolic capabilities is crucial for interpreting the ecological patterns in a desert environment and assessing the presence of exploitable microbial resources. In this study, we evaluated the spatial heterogeneity of physicochemical parameters, soil bacterial diversity and metabolic adaptation at meter scale. Soil samples were collected from two quadrats of a desert (Thar Desert, India) with a hot, arid climate, very little rainfall and extreme temperatures. Analysis of physico-chemical parameters and subsequent variance analysis (p-values < 0.05) revealed that sulfate, potassium and magnesium ions were the most variable between the quadrats. Microbial diversity of the two quadrats was studied using Illumina bar-coded sequencing by targeting V3-V4 regions of 16S rDNA. As for the results, 702504 high-quality sequence reads, assigned to 173 operational taxonomic units (OTUs) at species level, were examined. The most abundant phyla in both quadrats were Actinobacteria (38.72%), Proteobacteria (32.94%), and Acidobacteria (9.24%). At genus level, Gaiella represented highest prevalence, followed by Streptomyces, Solirubrobacter, Aciditerrimonas, Geminicoccus, Geodermatophilus, Microvirga, and Rubrobacter. Between the quadrats, significant difference (p-values < 0.05) was found in the abundance of Aciditerrimonas, Geodermatophilus, Geminicoccus, Ilumatobacter, Marmoricola, Nakamurella, and Solirubrobacter. Metabolic functional mapping revealed diverse biological activities, and was significantly correlated with physicochemical parameters. The results revealed spatial variation of ions, microbial abundance and functional attributes in the studied quadrats, and patchy nature in local scale. Interestingly, abundance of the biotechnologically important phylum Actinobacteria, with large proposition of unclassified species in the desert, suggested that this arid environment is a promising site for bioprospection.

Integration of ERS-2 SAR and IRS-1 D LISS-III Image Data for Improved Coastal Wetland Mapping of southern India

  • Shanmugam, P.;Ahn, Yu-Hwan;Sanjeevi, S.;Manjunath, A.S.
    • Korean Journal of Remote Sensing
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    • v.19 no.5
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    • pp.351-361
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    • 2003
  • As the launches of a series of remote sensing satellites, there are various multiresolution and multi-spectral images available nowadays. This diversity in remotely sensed image data has created a need to be able to integrate data from different sources. The C-band imaging radar of ERS-2 due to its high sensitivity to coastal wetlands holds tremendous potential in mapping and monitoring coastal wetland features. This paper investigates the advantages of using ERS-2 SAR data combined with IRS-ID LISS-3 data for mapping complex coastal wetland features of Tamil Nadu, southern India. We present a methodology in this paper that highlights the mapping potential of different combinations of filtering and integration techniques. The methodology adopted here consists of three major steps as following: (i) speckle noise reduction by comparative performance of different filtering algorithms, (ii) geometric rectification and coregistration, and (iii) application of different integration techniques. The results obtained from the analysis of optical and microwave image data have proved their potential use in improving interpretability of different coastal wetland features of southern India. Based visual and statistical analyzes, this study suggests that brovey transform will perform well in terms of preserving spatial and spectral content of the original image data. It was also realized that speckle filtering is very important before fusing optical and microwave data for mapping coastal mangrove wetland ecosystem.

An Applicability of Bioregional Planning Theory (생물지역계획 이론의 적용가능성)

  • 장병관
    • Journal of the Korean Institute of Landscape Architecture
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    • v.28 no.4
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    • pp.54-65
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    • 2000
  • The purpose of this paper is to examine the concept, general framework, planning process of bioregion, and bioregional impacts on landscape planning of future and to discuss the application possibility of landscape planning. Bioregionalism is defined in the course of following: knowing the land, learning the lore, developing the potential, liberating the self. Bioregional paradigm was composed of policy system insisted on diversity and decentralization based on region and community, sustainable economy structure focused on conservation and stability, and society structure through cooperation with common consciousness in the community. A general bioregional framework was organized to be able to achieve a sustainable future with interaction for humans being, other living things, and important earth life system. Bioregional mapping should be able to explain three important aspects about how localised and sustainable cultures would exist: to define the external boundaries, to describe forces of energy, and give a hint for th productive capability. In conclusion, according to the result of reviewing the total environmental planning, bioregional paradigm, examples of projects, technique of bioregional mapping, and actions of Nongovernmental Organizations(NGOs). this study is helpful to show an applicability of bioregional planning theory in Korea

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A Mapped Mc-OFDM Cooperative Communications System to Reduce PAPR and Improve Data Reliability (데이터 신뢰성 향상과 PAPR 감소를 위한 매핑된 Mc-OFDM 협력 통신 시스템)

  • Hwang, Yun-Kyeong;Kong, Hyung-Yun
    • The Journal of Korean Institute of Electromagnetic Engineering and Science
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    • v.18 no.11
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    • pp.1254-1261
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    • 2007
  • Mc-OFDM(Multi code-Orthogonal Frequency Division Multiplexing) modulation has been developed for high-speed data transmission over wireless channels. However, this system suffers critical problem from relatively high PAPR(Peak to Average Power Ratio). To reduce PAPR, we suggest a new technique, called Mapping using (N+1)PSK and demonstrate the performance of mapped Mc-OFDM system. On the other side, in OFDM system, each sub-carrier experiences different fading, thus some sub-carriers may be completely lost because of deep fade. To solve a above mention problem, we propose cooperative communications that improve the reliability of sub-carriers through spatial diversity.

Uplink Pilot Signal Design for Mobile Wireless Backhaul (이동무선백홀을 위한 상향링크 파일럿 신호 설계)

  • Choi, Seung Nam;Kim, Ilgyu;Kim, Dae Jin
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.40 no.6
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    • pp.1005-1013
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    • 2015
  • In this paper, an uplink pilot signal structure is proposed for millimeter wave(mmWave)-based mobile wireless backhaul. For the transmit diversity of two antenna ports, uplink pilot signals generated from the Zadoff-Chu sequence can be mapped in an interleaved mode or continuous mode on the frequency axis, and channel estimation algorithms are different depending on the pilot signal mapping schemes. Through a simulation under Rayleigh fading channel assuming a subway scenario, the interleaved mapping scheme showed no performance degradation compared to the continuous mapping scheme and the implementation complexity of the uplink channel estimator was reduced due to the interleaved mapping scheme.

Modern Control of Space and the British Empire's Management of Irish Territory (공간의 근대적 규율과 영국 제국의 아일랜드 영토 경영)

  • Lee, Sungbum
    • Journal of English Language & Literature
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    • v.57 no.4
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    • pp.553-580
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    • 2011
  • This article addresses how the British Empire administered the discipline of space in nineteenth century Ireland. Space control is a part of modern disciplinary practices. I approach this issue in light of the two modern mapping of space: the geometric mapping of space and the Romantic mapping of space. The former, as seen in map-making, is characterized by imposing a standardized, stratified grid on space by eliminating local characteristics of nature. On the other hand, the latter, as shown in picturesque landscaping, aims to balance a close-up observation of nature and a far-sighted view of it, with the result of creating an ironic tension of local diversity and perspectival totality. These modern disciplinary projects of space repeat themselves in the British management of the colonized Irish territory. As the British conquer other lands, they put to good use both geometric and Romantic disciplinary methods of space. Supervising the Ordnance Survey of Ireland from 1824 to 1846, Thomas Frederick Colby, British Director of Ordnance Survey, made a mathematically strict and scientific mapping of Ireland as a scale of six inches to one mile. Parallelled to this geometric colonization of space, the Romantic colonization of space is efficiently used for the Empire's management of Ireland as well. British tourists and pro-unionist Anglo-Irish landed gentries transform it into the nature of picturesque beauty; Ireland's wild boglands turn aesthetically into desolate but beautiful scenery. Picturesque landscape in England is reborn as an aesthetics of desolation in Ireland.

Genetic Diversity Among Waxy Corn Accessions in Korea Revealed by Microsatellite Markers

  • Park, Jun-Seong;Park, Jong-Yeol;Park, Ki-Jin;Lee, Ju-Kyong
    • Korean Journal of Breeding Science
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    • v.40 no.3
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    • pp.250-257
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    • 2008
  • Knowledge of genetic diversity and of the genetic relationships among elite breeding materials has had a significant impact on the improvement of crops. In maize, this information is particularly useful in i) planning crosses for hybrid and line development, ii) in assigning lines to heterotic groups and iii) in plant variety protection. We have used the SSR technique to study the genetic diversity and genetic relationships among 76 Korean waxy corn accessions, representing a diverse collection from throughout Korea. Assessment of genetic diversity among members of this group was conducted using 30 microsatellite markers. Among these 30 microsatellite markers, we identified a total of 127 alleles (with an average of 4.2 and a range of between 2 and 9 alleles per locus). Gene diversity at these 30 microsatellite loci varied from 0.125 to 0.795 with an average of 0.507. The cluster tree generated with the described microsatellite markers recognized two major groups with 36.5% genetic similarity. Group I includes 63 inbred lines, with similarity coefficients of between 0.365 and 0.99. Group II includes 13 inbred lines, with similarity coefficients of between 0.45 and 0.85. The present study indicates that the 30 microsatellite loci chosen for this analysis are effective molecular markers for the assessment of genetic diversity and genetic relationships between Korean waxy corn accessions. Specifically, this study's assessment of genetic diversity and relationships between a set of 76 Korean waxy corn inbred lines will be helpful for such activities as planning crosses for hybrid and line development and association mapping analyses of maize breeding programs in Korea.

Morphological Characteristics and Genetic Diversity Analysis of Platycodon grandiflorum (Jacq.) A. DC Determined Using SSR Markers (도라지 수집종의 형태적 특성과 SSR마커에 의한 유연관계 분석)

  • Um, Yurry;Lee, Yi;Jin, Mei-Lan;Lee, Dae Young;Lee, Jae Won;Kim, Geum Soog;Kim, Chang Kug;Hong, Chang Pyo;Kim, Ok Tae
    • Korean Journal of Medicinal Crop Science
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    • v.24 no.1
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    • pp.55-61
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    • 2016
  • Background : Plant breeding requires the collection of genetically diverse genetic resources. Studies on the characteristics of Platycodon grandiflorum resources have not been carried out so far. The present study was carried out to discriminate P. grandiflorum based on morphological characteristics and genetic diversity using simple sequence repeat (SSR) markers. Methods and Results :We collected 11 P. grandiflorum cultivars: Maries II, Hakone double white, Hakone double blue, Fuji white, Fuji pink, Fuji blue, Astra white, Astra pink, Astra blue, Astra semi-double blue and Jangbaek. Analyses of the morphological characteristics of the collection were conducted for aerial parts (flower, stem and leaf) and underground parts (root). Next, the genetic diversity of all P. grandiflorum resources was analyzed using SSR markers employing the DNA fragment analysis method. We determined that the 11 P. grandiflorum cultivars analyzed could be classified by plant length, leaf number and root characteristic. Based on the genetic diversity analysis, these cultivars were classified into four distinct groups. Conclusions : These findings could be used for further research on cultivar development using molecular breeding techniques and for conservation of the genetic diversity of P. grandiflorum. Moreover, the markers could be used for genetic mapping of the plant and marker-assisted selection for crop breeding.

Qualitative Mapping of Ambient Intelligence Characteristics to Operating System Features in Smart Environment

  • Choo, Young-Yeol
    • International Journal of Contents
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    • v.2 no.4
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    • pp.1-7
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    • 2006
  • The goal of Ambient Intelligence (AmI) is to build a smart environment for users where they are supported in some of their activities by many interaction mechanisms. The diversity of AmI characteristics requires special support from Operating Systems (OSes). In this paper, in order to support a conscious choice of an operating system for any specific AmI application, features requested by AmI systems were characterized and defined considering various applications. Then, characteristics of existing Operating Systems have been investigated in the context of AmI application support to relate their key characteristics to the typical requirements of AmI systems. Qualitative mapping table between AmI characteristics and as features has been proposed with an illustration of how to use it. As no as completely covers the range of characteristics required by AmI systems, challenging issues are summarized for the development of a new as and a product line of OSes.

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