• 제목/요약/키워드: MRI segmentation

검색결과 118건 처리시간 0.024초

무릎 연골 두께 아틀라스를 통한 손상 평가 기법 (Knee Cartilage Defect Assessment using Cartilage Thickness Atlas)

  • 이용우;;안천수;신지태
    • 대한의용생체공학회:의공학회지
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    • 제36권2호
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    • pp.43-47
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    • 2015
  • Osteoarthritis is the most common chronic joint disease in the world. With its progression, cartilage thickness tends to diminish, which causes severe pain to human being. One way to examine the stage of osteoarthritis is to measure the cartilage thickness. When it comes to inter-subject study, however, it is not easy task to compare cartilage thickness since every human being has different cartilage structure. In this paper, we propose a method to assess cartilage defect using MRI inter-subject thickness comparison. First, we used manual segmentation method to build accurate atlas images and each segmented image was labeled as articular surface and bone-cartilage interface in order to measure the thickness. Secondly, each point in the bone-cartilage interface was assigned the measured thickness so that the thickness does not change after registration. We used affine transformation and SyGN to get deformation fields which were then applied to thickness images to have cartilage thickness atlas. In this way, it is possible to investigate pixel-by-pixel thickness comparison. Lastly, the atlas images were made according to their osteoarthritis grade which indicates the degree of its progression. The result atlas images were compared using the analysis of variance in order to verify the validity of our method. The result shows that a significant difference is existed among them with p < 0.001.

의료 두뇌영상의 익명성 (Anonymity of Medical Brain Images)

  • 이효종;두약유
    • 대한전자공학회논문지SP
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    • 제49권1호
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    • pp.81-87
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    • 2012
  • 현재 사용되고 있는 두뇌영상의 제거 방법은 비록 환자의 개인 정보를 보호하고 있으나, 과도한 제거로 정확한 두뇌영상의 무결성을 손실할 수 있다. 원래 두뇌의 영상과 동일한 두뇌 조직을 나타내면서 환자의 신원을 감출 수 있는 새로운 익명화 얼굴모델을 생성시키는 방법을 연구하였다. 제안방법은 두 단계로 구성되었다: 10명의 두뇌영상을 정규화시켜서 모조 두뇌 표본 영상을 생성하는 단계와 실험영상 두뇌의 외곽부를 모조 두뇌의 안면부로 대체시키는 단계이다. 전체 두뇌영상에서 두피와 두개골 영역을 분할하기 위하여 레벨셋 알고리즘을 적용하였다. 영역화된 모조 두뇌를 대상 두뇌영상에 동일하게 배치하고 정규화를 시켜서 익명화된 얼굴 모델을 생성하였다. 원래 영상과 변형된 영상의 두뇌 조직부의 밝기 변화를 비교하여 제안 알고리즘의 타당성을 실험하였다. 실험 결과 두 두뇌영상은 두뇌 조직에서 완전히 동일하면서 신원을 파악할 수 없는 것을 검증하였다.

Evaluation of Hippocampal Volume Based on Various Inversion Time in Normal Adults by Manual Tracing and Automated Segmentation Methods

  • Kim, Ju Ho;Choi, Dae Seob;Kim, Seong-hu;Shin, Hwa Seon;Seo, Hyemin;Choi, Ho Cheol;Son, Seungnam;Tae, Woo Suk;Kim, Sam Soo
    • Investigative Magnetic Resonance Imaging
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    • 제19권2호
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    • pp.67-75
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    • 2015
  • Purpose: To investigate the value of image post-processing software (FreeSurfer, IBASPM [individual brain atlases using statistical parametric mapping software]) and inversion time (TI) in volumetric analyses of the hippocampus and to identify differences in comparison with manual tracing. Materials and Methods: Brain images from 12 normal adults were acquired using magnetization prepared rapid acquisition gradient echo (MPRAGE) with a slice thickness of 1.3 mm and TI of 800, 900, 1000, and 1100 ms. Hippocampal volumes were measured using FreeSurfer, IBASPM and manual tracing. Statistical differences were examined using correlation analyses accounting for spatial interpretations percent volume overlap and percent volume difference. Results: FreeSurfer revealed a maximum percent volume overlap and maximum percent volume difference at TI = 800 ms ($77.1{\pm}2.9%$) and TI = 1100 ms ($13.1{\pm}2.1%$), respectively. The respective values for IBASPM were TI = 1100 ms ($55.3{\pm}9.1%$) and TI = 800 ms ($43.1{\pm}10.7%$). FreeSurfer presented a higher correlation than IBASPM but it was not statistically significant. Conclusion: FreeSurfer performed better in volumetric determination than IBASPM. Given the subjective nature of manual tracing, automated image acquisition and analysis image is accurate and preferable.

Cardiac CT for Measurement of Right Ventricular Volume and Function in Comparison with Cardiac MRI: A Meta-Analysis

  • Jin Young Kim;Young Joo Suh;Kyunghwa Han;Young Jin Kim;Byoung Wook Choi
    • Korean Journal of Radiology
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    • 제21권4호
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    • pp.450-461
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    • 2020
  • Objective: We performed a meta-analysis to evaluate the agreement of cardiac computed tomography (CT) with cardiac magnetic resonance imaging (CMRI) in the assessment of right ventricle (RV) volume and functional parameters. Materials and Methods: PubMed, EMBASE, and Cochrane library were systematically searched for studies that compared CT with CMRI as the reference standard for measurement of the following RV parameters: end-diastolic volume (EDV), end-systolic volume (ESV), stroke volume (SV), or ejection fraction (EF). Meta-analytic methods were utilized to determine the pooled weighted bias, limits of agreement (LOA), and correlation coefficient (r) between CT and CMRI. Heterogeneity was also assessed. Subgroup analyses were performed based on the probable factors affecting measurement of RV volume: CT contrast protocol, number of CT slices, CT reconstruction interval, CT volumetry, and segmentation methods. Results: A total of 766 patients from 20 studies were included. Pooled bias and LOA were 3.1 mL (-5.7 to 11.8 mL), 3.6 mL (-4.0 to 11.2 mL), -0.4 mL (5.7 to 5.0 mL), and -1.8% (-5.7 to 2.2%) for EDV, ESV, SV, and EF, respectively. Pooled correlation coefficients were very strong for the RV parameters (r = 0.87-0.93). Heterogeneity was observed in the studies (I2 > 50%, p < 0.1). In the subgroup analysis, an RV-dedicated contrast protocol, ≥ 64 CT slices, CT volumetry with the Simpson's method, and inclusion of the papillary muscle and trabeculation had a lower pooled bias and narrower LOA. Conclusion: Cardiac CT accurately measures RV volume and function, with an acceptable range of bias and LOA and strong correlation with CMRI findings. The RV-dedicated CT contrast protocol, ≥ 64 CT slices, and use of the same CT volumetry method as CMRI can improve agreement with CMRI.

KISTI에 있어서 한국인 인체정보의 생산과 활용 (Production and Usage of Korean Human Information in KISTI)

  • 이상호;이승복
    • 한국콘텐츠학회논문지
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    • 제10권5호
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    • pp.416-421
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    • 2010
  • 한국과학기술정보연구원(KISTI)는 2000년부터 한국인의 고유한 인체 특징을 나타낼 수 있는 디지털코리언, 비저블 코리언이라는 한국인 인체정보 구축사업을 시작하였다. 비저블 코리언 사업은 한국인 시신에 대해 CT, MRI 영상을 촬영한 다음 연속 절단하여 절단면 영상을 얻고 이 절단면 영상에서 인체장기를 구역화하여 구역화 영상을 제작하였다. 남성 및 여성 전신과 남성 머리 및 여성 골반의 절단면영상 제작을 마쳤으며 현재 구역화 영상을 이용한 3D 영상 제작이 진행 중이다. 디지털 코리언 사업은약 100여명의 한국인 시신에 대해 촬영한 CT 영상으로 구성되어 있는데 CT 영상으로부터 개별 뼈를 구역화하여 3D 골격 모델을 제작하였고 피부 모델도 추가하였다. 또한 개별 뼈들의 기계적 물성값도 측정하여 제공하고 있다. 이러한 인체정보들은 2001년부터 국내외 연구자들에게 제공되어 왔는데 지금까지 국내 약 70여개 기관, 해외 약 20여개 기관들이 한국인의 인체 데이터를 제공받아 연구 활동을 진행하고 있으며 지금까지 약 160여 논문이 발표되었다. 향후에도 이러한 한국인의 인체정보는 의료 교육, 생체공학, 가상현실 등의 다양한 분야에 활용될 의료정보 인프라의 역할을 담당할 것으로 기대하고 있다.

급성 뇌졸중 환자의 시공간 분석 기법을 이용한 동적 전산화 단층 검사: 예비 연구 (Dynamic Computed Tomography based on Spatio-temporal Analysis in Acute Stroke: Preliminary Study)

  • 박하영;편도영;김다혜;정영진
    • 대한방사선기술학회지:방사선기술과학
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    • 제39권4호
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    • pp.543-547
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    • 2016
  • 급성 뇌졸중(acute stroke)의 경우 빠른 처치가 이루어지지 않으면 뇌손상으로 인해 평생 장애를 가지고 살아가야 하는 질환이다. 따라서 뇌졸중 환자가 발생할 경우에는 신속한 진단과 치료가 이루어져야 하므로 장시간의 검사를 해야 하는 MRI 보다는 빠른 검사와 3D 구현이 가능한 뇌 관류전산화단층촬영(Brain Perfusion CT)이 널리 활용되고 있다. 그러나 환자에게 많은 방사선 피폭이 이루어질 수 있기 때문에 저선량(low dose) 기법을 사용하여 영상을 획득하게 된다. 이로 인해 촬영된 영상의 질 저하가 유발되며, 특히 가우시안노이즈의 영향을 크게 받아 정확한 혈관 영상의 확인을 저해한다. 본 연구에서는 관류전산화단층촬영을 통해 얻어진 동적 CT 데이터에 시공간 분석 기법을 적용하여 진단 영상의 질을 향상시키고자 한다. 특히, 가우시안노이즈를 제거하기 위해서 선형 특징 축출 방법 중 하나인 주성분 분석 기법을 적용하여 분석하였으며, 그 결과 시공간 특징에 따른 각각의 관류 영상 성분을 축출한 경우 뇌-혈관 영상뿐만 아니라 뇌-실질 영상의 질이 향상됨을 가시적으로 확인할 수 있었다. 새롭게 시도된 시공간 기반 영상기법이 향후 급성 뇌졸중 진단뿐만 아니라 다양한 시계열 정보가 포함된 뇌질환 진단 영상분석에 활용된다면, 임상 진단의 질 향상에 도움이 될 것이라 기대한다.

Application of Volumetric Analysis to Glioblastomas: a Correlation Study on the Status of the Isocitrate Dehydrogenase Mutation

  • Bae, Seon Yong;Park, Chul-Kee;Kim, Tae Min;Park, Sung-Hye;Kim, Il Han;Choi, Seung Hong
    • Investigative Magnetic Resonance Imaging
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    • 제19권4호
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    • pp.218-223
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    • 2015
  • Purpose: To investigate whether volumetric analysis based on T2WI and contrast-enhanced (CE) T1WI can distinguish between isocitrate dehydrogenase-1 mutation-positive ($IDH1^P$) and -negative ($IDH1^N$) glioblastomas (GBMs). Materials and Methods: We retrospectively enrolled 109 patients with histopathologically proven GBMs after surgery or stereotactic biopsy and preoperative MR imaging. We measured the whole-tumor volume in each patient using a semiautomatic segmentation method based on both T2WI and CE T1WI. We compared the tumor volumes between $IDH1^P$ (n = 12) and $IDH1^N$ (n = 97) GBMs using an unpaired t-test. In addition, we performed receiver operating characteristic (ROC) analysis for the differentiation of $IDH1^P$ and $IDH1^N$ GBMs using the tumor volumes based on T2WI and CE T1WI. Results: The mean tumor volume based on T2WI was larger for $IDH1^P$ GBMs than $IDH1^N$ GBMs ($108.8{\pm}68.1$ and $59.3{\pm}37.3mm^3$, respectively, P = 0.0002). In addition, $IDH1^P$ GBMs had a larger tumor volume on CE T1WI than did $IDH1^N$ tumors ($49.00{\pm}40.14$ and $22.53{\pm}17.51mm^3$, respectively, P < 0.0001). ROC analysis revealed that the tumor volume based on T2WI could distinguish $IDH1^P$ from $IDH1^N$ with a cutoff value of 90.25 (P < 0.05): 7 of 12 $IDH1^P$ (58.3%) and 79 of 97 $IDH1^N$ (81.4%). Conclusion: Volumetric analysis of T2WI and CE T1WI could enable $IDH1^P$ GBMs to be distinguished from $IDH1^N$ GBMs. We assumed that secondary GBMs with $IDH1^P$ underwent stepwise progression and were more infiltrative than those with $IDH1^N$, which might have resulted in the differences in tumor volume.

Myelin Content in Mild Traumatic Brain Injury Patients with Post-Concussion Syndrome: Quantitative Assessment with a Multidynamic Multiecho Sequence

  • Roh-Eul Yoo;Seung Hong Choi;Sung-Won Youn;Moonjung Hwang;Eunkyung Kim;Byung-Mo Oh;Ji Ye Lee;Inpyeong Hwang;Koung Mi Kang;Tae Jin Yun;Ji-hoon Kim;Chul-Ho Sohn
    • Korean Journal of Radiology
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    • 제23권2호
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    • pp.226-236
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    • 2022
  • Objective: This study aimed to explore the myelin volume change in patients with mild traumatic brain injury (mTBI) with post-concussion syndrome (PCS) using a multidynamic multiecho (MDME) sequence and automatic whole-brain segmentation. Materials and Methods: Forty-one consecutive mTBI patients with PCS and 29 controls, who had undergone MRI including the MDME sequence between October 2016 and April 2018, were included. Myelin volume fraction (MVF) maps were derived from the MDME sequence. After three dimensional T1-based brain segmentation, the average MVF was analyzed at the bilateral cerebral white matter (WM), bilateral cerebral gray matter (GM), corpus callosum, and brainstem. The Mann-Whitney U-test was performed to compare MVF and myelin volume between patients with mTBI and controls. Myelin volume was correlated with neuropsychological test scores using the Spearman rank correlation test. Results: The average MVF at the bilateral cerebral WM was lower in mTBI patients with PCS (median [interquartile range], 25.2% [22.6%-26.4%]) than that in controls (26.8% [25.6%-27.8%]) (p = 0.004). The region-of-interest myelin volume was lower in mTBI patients with PCS than that in controls at the corpus callosum (1.87 cm3 [1.70-2.05 cm3] vs. 2.21 cm3 [1.86-3.46 cm3]; p = 0.003) and brainstem (9.98 cm3 [9.45-11.00 cm3] vs. 11.05 cm3 [10.10-11.53 cm3]; p = 0.015). The total myelin volume was lower in mTBI patients with PCS than that in controls at the corpus callosum (0.45 cm3 [0.39-0.48 cm3] vs. 0.48 cm3 [0.45-0.54 cm3]; p = 0.004) and brainstem (1.45 cm3 [1.28-1.59 cm3] vs. 1.54 cm3 [1.42-1.67 cm3]; p = 0.042). No significant correlation was observed between myelin volume parameters and neuropsychological test scores, except for the total myelin volume at the bilateral cerebral WM and verbal learning test (delayed recall) (r = 0.425; p = 0.048). Conclusion: MVF quantified from the MDME sequence was decreased at the bilateral cerebral WM in mTBI patients with PCS. The total myelin volumes at the corpus callosum and brainstem were decreased in mTBI patients with PCS due to atrophic changes.