• 제목/요약/키워드: Ligand field

검색결과 96건 처리시간 0.024초

Comparative Molecular Similarity Index Analysis on 2-(indol-5-yl)thiazolederivatives as Xanthine Oxidase(XO)inhibitors

  • Nagarajan, Santhosh Kumar;Madhavan, Thirumurthy
    • 통합자연과학논문집
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    • 제9권3호
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    • pp.190-198
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    • 2016
  • Xanthine Oxidase is an enzyme, which oxidizes hypoxanthine to xanthine, and xanthine to uric acid. It is widely distributed throughout various organsincluding the liver, gut, lung, kidney, heart, brain and plasma. It is involved in gout pathogenesis. In this study, we have performed Comparative Molecular Field Analysis (CoMSIA) on a series of 2-(indol-5-yl) thiazole derivatives as xanthine oxidase (XO) inhibitors to identify the structural variations with their inhibitory activities. Ligand based CoMSIA models were generated based on atom-by-atom matching alignment. In atom-by-atom matching, the bioactive conformation of highly active molecule 11 was generated using systematic search. Compounds were aligned using the bioactive conformation and it is used for model generation. Different CoMSIA models were generated using different alignments and the best model yielded across-validated $q^2$ of 0.698 with five components and non-cross-validated correlation coefficient ($r^2$) of 0.992 with Fisher value as 236.431, and an estimated standard error of 0.068. The predictive ability of the best CoMSIA models was found to be $r{^2}_{pred}$ 0.653. The study revealed the important structural features required for the biological activity of the inhibitors and could provide useful for the designing of novel and potent drugs for the inhibition of Xanthine oxidase.

An NMR Study of Solvent Interactions in a Paramagnetic System

  • Golding, R.M.;Pascual, R.O.;Suvanprakorn, C.;Dance, I.G.
    • Bulletin of the Korean Chemical Society
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    • 제27권11호
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    • pp.1752-1756
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    • 2006
  • This study explores and interprets in a new way the complex solvent and the temperature dependence of the NMR shifts for the N-$CH_2$ protons in tris(N,N-diethyldithiocarbamato) iron(III) in acetone, benzene, carbon disulfide, chloroform, dimethylformamide and pyridine. The NMR shifts are interpreted in terms of the Fermi contact interaction and the dipolar term from the multipole expansion of the interaction of the electron orbital angular momentum and the electron spin dipolar-nuclear spin angular momentum. This analysis yields a direct measure of the effect of the solvent system on the environment of the transition metal ion. The results are analysed in terms of the crystal field environment of the transition metal ion with contributions from (a) the dithiocarbamate ligand (b) the solvent molecules and (c) the interaction of the effective dipole moment of the polar solvent molecule with the transition metal ion complex.

Ceramic Materials having Strain Sensing Properties -The CaO-NiO Ceramics-

  • Seo, Sato-Shi;Akira Kishimoto
    • The Korean Journal of Ceramics
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    • 제5권2호
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    • pp.165-170
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    • 1999
  • The strain sensing properties of th system xNiO-(1-x) CaO with various compositions (x=0.001-0.05) are evaluated and the origin of the phenomena is guessed. We have found out that the high temperature electrical conductivity of the xNiO-(1-x)CaO increases by applying the compressive stress at $1000^{\circ}C$. When the applied load is removed, the electrical conductivity rapidly decreases and returns to the original value, but a small hysteresis of the stress-conductivity curve is observed. After the loading test, the lattice parameter of the specimen is found lengthened. The correlation between the lengthening of the lattice parameter and the increases in the electrical conductivity by loading is discussed. The amount of the "expanded type" Ni(II)O6 clusters in the xNiO-(1-x)CaO grains is supposed to be increased by the applied stress, which would be the origin of the strain dependent electric conduction in the xNiO-(1-x)CaO system.aO system.

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In-silico Modeling of Chemokine Receptor CCR2 And CCR5 to Assist the Design of Effective and Selective Antagonists

  • Kothandan, Gugan;Cho, Seung Joo
    • 통합자연과학논문집
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    • 제5권1호
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    • pp.32-37
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    • 2012
  • Chemokine receptor antagonists have potential applications in field of drug discovery. Although the chemokine receptors are G-protein-coupled receptors, their cognate ligands are small proteins (8 to 12 kDa), and so inhibiting the ligand/receptor interaction has been challenging. The application of structure-based in-silico methods to drug discovery is still considered a major challenge, especially when the x-ray structure of the target protein is unknown. Such is the case with human CCR2 and CCR5, the most important members of the chemokine receptor family and also a potential drug target. Herein, we review the success stories of combined receptor modeling/mutagenesis approach to probe the allosteric nature of chemokine receptor binding by small molecule antagonists for CCR2 and CCR5 using Rhodopsin as template. We also urged the importance of recently available ${\beta}2$-andrenergic receptor as an alternate template to guide mutagenesis. The results demonstrate the usefulness and robustness of in-silico 3D models. These models could also be useful for the design of novel and potent CCR2 and CCR5 antagonists using structure based drug design.

Comparative Analysis of CCR2 and CCR5 Binding Sites to Facilitate the Development of Dual Antagonists: An in Silico Study

  • Kothandan, Gugan
    • 통합자연과학논문집
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    • 제5권1호
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    • pp.22-26
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    • 2012
  • Chemokine receptor antagonists have potential applications in field of drug discovery. Although the chemokine receptors are G-protein-coupled receptors, their cognate ligands are small proteins (8 to 12 kDa), and so inhibiting the ligand/receptor interaction has been challenging. In particular, CCR2 and CCR5 and their ligands have been implicated in the pathophysiology of a number of diseases, including rheumatoid arthritis and multiple sclerosis. Based on their roles in disease, they have been attractive targets for the pharmaceutical industry, targeting both CCR2 and CCR5 could be a useful strategy. Because of the importance of these receptors, providing information regarding the binding site is of prime importance. Herein, we report the comparison of CCR2 of CCR5 binding sites both sequentially as well as structurally. We also urged the importance of crucial residues in the binding site, to facilitate the development of dual antagonists targeting both the receptors. These results could also be useful for the design of novel and potent dual CCR2 and CCR5 antagonists using structure based drug design.

Detection and Manipulation of Spin state of Single Molecule Magnet: Kondo resonance and ESR-STM

  • Komeda, T.;Isshiki, H.;Zhang, Y.F.;Katoh, K.;Yoshida, Y.;Yamashita, M.;Miyasaka, H.;Breedlove, B.K.
    • 한국진공학회:학술대회논문집
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    • 한국진공학회 2009년도 제38회 동계학술대회 초록집
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    • pp.16-17
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    • 2010
  • Molecular spintronics has attracted attentions, which combines molecular electronics with the spin degree of freedom in electron transport. Among various molecules as candidates of the molecular spintronics, single molecule magnet (SMM) is one of the most promising material. SMM molecules show a ferromagnetic behavior even as a single molecule and hold the spin information even after the magnetic field is turned off. Here in this report, we show the spin behavior of SMM molecules adsorbed on the Au surface by combining the observation of Kondo peak in the STS and ESR-STM measurement. Kondo resonance state is formed near the Fermi level when degenerated spin state interacts with conduction electrons. ESR-STM detects the Larmor frequency of the spin in the presence of a magnet field. The sample include $MPc_2$ and $M_2Pc_3$ molecules ($M\;=\;Tb^{3+}$, $Dy^{3+}$, and $Y^{3+}$ Pc=phthalocyanine) whose critical temperature as a ferromagnet reaches 40 K. A clear Kondo peak was observed which is originated from an unpaired electron in the ligand of the molecule, which is the first demonstration of the Kondo peak originated from electron observed in the STS measurement. We also observed corresponding peaks in ESR-STM spectra. [1] In addition we found that the Kondo peak intensity shows a clear variation with the conformational change of the molecule; namely the azimuthal rotational angle of the Pc planes. This indicates that the Kondo resonance is correlated with the molecule electronic state. We examined this phenomena by using STM manipulation technique, where pulse bias application can rotate the relative azimuthal angle of the Pc planes. The result indicates that an application of ~1V pulse to the bias voltage can rotate the Pc plane and the Kondo peaks shows a clear variation in intensity by the molecule's conformational change.

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Trimethylsilyl Chloride를 Silylation Agent로 사용한 Ba0.6Sr0.4TiO3 나노입자의 표면개질 연구 (Surface Modification of Ba0.6Sr0.4TiO3 by Trimethylsilyl Chloride as a Silylation Agent)

  • 이찬;한우제;박형호
    • 마이크로전자및패키징학회지
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    • 제26권4호
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    • pp.127-132
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    • 2019
  • 본 연구에서는 liquid-solid solution 합성법을 통해 고유전 페로브스카이트 구조의 barium strontium titanate(Ba0.6Sr0.4TiO3, BSTO)를 합성하여 trimethylsilyl chloride(TMCS)를 silylation agent로 이용한 표면개질을 진행하였다. Silylation 표면개질을 활용하여 기존 BSTO 나노입자 표면에 있던 -OH 리간드와 TMCS가 갖고 있는 Cl을 반응시켜 나노입자 표면의 리간드를 -Si, -CH3로 치환하였다. 다양한 TMCS 농도의 변화를 주어 silylation을 진행했고, Fourier-transform infrared spectroscopy 및 X 선 회절 분석, 전계방사 주사전자현미경을 통해 silicon network 및 결정구조, 나노입자의 크기를 확인하였다. 접촉각 변화 관찰을 통해 가장 많이 silylation된 BSTO 나노입자에서 120.9°인 소수성 특성을 확인하였다. 나노입자의 silylation을 통해 D.I water 내 BSTO 나노입자의 소수화 정도를 확인하였다.

Synthesis and Ligand Based 3D-QSAR of 2,3-Bis-benzylidenesuccinaldehyde Derivatives as New Class Potent FPTase Inhibitor, and Prediction of Active Molecules

  • Soung, Min-Gyu;Kim, Jong-Han;Kwon, Byoung-Mog;Sung, Nack-Do
    • Bulletin of the Korean Chemical Society
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    • 제31권5호
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    • pp.1355-1360
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    • 2010
  • In order to search new inhibitors against farnesyl protein transferase (FPTase), a series of 2,3-bis-benzylidenesuccinaldehyde derivatives (1-29) were synthesized and their inhibition activities ($pI_{50}$) against FPTase were measured. From based on the reported results that the inhibitory activities of dimers 2,3-bis-benzylidenesuccinaldehydes were higher than those of monomers cinnamaldehydes, 3D-QSARs on FPTase inhibitory activities of the dimers (1-29) were studied quantitatively using comparative molecular field analysis (CoMFA) and comparative molecular similarity indices analysis (CoMSIA) methods. The statistical qualities of the optimized CoMFA model II ($r^2{_{cv.}}$= 0.693 and $r^2{_{ncv.}}$= 0.974) was higher than those of the CoMSIA model II ($r^2{_{cv.}}$ = 0.484 and $r^2{_{ncv.}}$ = 0.928). The dependence of CoMFA models on chance correlations was evaluated with progressive scrambling analyses. And the inhibitory activity exhibited a strong correlation with steric factors of the substrate molecules. Therefore, from the results of graphical analyses on the contour maps and of predicted higher inhibitory active compounds, it is suggested that the structural distinctions and descriptors that contribute to inhibitory activities ($pI_{50}$) against FPTase will be able to applied new inhibitor design.

Cobalt가 첨가된 이트리아 안정화 큐빅지르코니아(YSZ) 단결정의 리간드장에 따른 색상변화 (Color-change for ligand field of cobalt doped yttria stabilized cubic zirconia (YSZ) single crystal)

  • 석정원;최종건
    • 한국결정성장학회지
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    • 제17권1호
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    • pp.35-40
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    • 2007
  • 스컬(skull)용융법에 의해 성장시킨 코발트($Co^{2+}$)가 도핑(doping)된 $25{\sim}50wt%$의 서로 다른 $Y_2O_3$ 함량을 가진 이트리아 안정화 큐빅지르코니아(YSZ) 단결정을 $N_2$ 분위기 $1000^{\circ}C$에서 5시간 동안 열처리하였다. 적갈색의 단결정들은 각각 보라색 또는 청색으로 변화되었으며, Co가 첨가(doping) 된 처리 전 후의 YSZ들은 직경 6.5, 두께 2 mm의 웨이퍼 또는 직경 10 mm의 라운드브릴리언트 컷(round brilliant cut)으로 연하 하였으며, 광학적 또는 구조적 특성은 UV-VIS 분광광도계와 XRD(X-ray diffraction)로 측정하였으며, $Co^{2+}\;(^4A_2(^4F)\to{^4P})$$Co^{3+}$에 의한 흡수, 에너지 간격(energy gap) 및 격자 매개 변수(lattice parameter)변화가 분석되었다.

희토류금속(Ⅲ) 착물들의 전자적 성질과 전기화학적 거동에 관한 연구 (Ⅲ) (A Study on the Electronic Properties and Electrochemical Behavior of Rare Earch Metal(Ⅲ) Complexes (Ⅲ))

  • 최칠남;손효열
    • 대한화학회지
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    • 제38권8호
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    • pp.590-597
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    • 1994
  • 유기 리간드(2,2,6,6-테트라메틸-3,5-헵탄내디온)을 란탄나이드 3가$(Pr^{3+}, Eu^{3+}, Gd^{3+} 그리고 Yb^{3+})$와의 착물들에 대한 거동을 UV-Vis 분광학적, 자기적, 그리고 전기화학적 방법에 의해 조사하였다. 2 또는 3개의 에너지 흡수띠가 이들 착물들의 스펙트라에 의해 관찰되었다. 결정장 갈라짐 에너지 크기와 스핀 또는 3개의 에너지 흡수띠가 이들 착물들의 스펙트라에 의해 관찰되었다. 결정장 갈라짐 에너지 크기와 스핀 짝지움 에너지 그리고 결합세기는 착물들의 스펙트라로부터 얻어졌다. 이들은 편재화이고, 낮은 스핀(또는 높은 스핀) 상태이며 그리고 강한 결합세기임을 알았다. 착물들의 거동은 비수용매속에서 순환전압전류법에 의해 관찰하였다. 이들 환원피크는 전자전이에 의한 2 또는 3단계의 비가역성이었다.

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