Proceedings of the Plant Resources Society of Korea Conference
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2020.08a
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pp.27-27
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2020
Daphne L. (Thymelaceae) comprises about 95 species distributing worldwide from N Africa, N India, SE Asia to E Asia and the coast of the Mediterranean of Europe. In Korea, five species of this genus have been described. In this study, we included four species (D. genkwa, D. pseudomezereum, D. kiusiana, D. jejudoensis) from Korea, excluding cultivated D. odora. The morphological characters through local surveys and the re-classification of the specimens collected in the Korea National Herbarium (KH) were carried out and distribution maps for each taxon were also prepared. The major characters include habit, trichomes in winter bud, leaf, and twig, phyllotaxis, inflorescence, size of calyx lobe and trichomes in the calyx tube, etc. The distribution map showed that D. genkwa is mainly distributed in the coastal area of Hwanghaenam-do, Pyeongannam-do, Jeollabuk-do and Jeollanam-do, whereas D. pseudomezereum is distributed in the limestone zone of Gangwon-do, Jeollabuk-do, and Gyeongsangbuk-do. Similarly, D. kiusiana is mostly found in Jeollanam-do, Gyeongsangnam-do, and Jeju-do. In addition, D. jejudoensis is known to be distributed in forests of Murueng, Andeok, and Seonheul-ri in Jeju-do, but recently, new habitat is discovered in the island forest areas of Jeollanam-do. However, some of these individuals showed the characteristics of D. kiusiana, thus before come to any conclusion detailed taxonomic review of D. jejudoensis and D. kiusiana is required.
Journal of the Korean Society of Environmental Restoration Technology
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v.26
no.6
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pp.85-96
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2023
This study proposes a method for forest vegetation monitoring using high-resolution aerial imagery captured by unmanned aerial vehicles(UAV) and deep learning technology. The research site was selected in the forested area of Mountain Dogo, Asan City, Chungcheongnam-do, and the target species for monitoring included Pinus densiflora, Quercus mongolica, and Quercus acutissima. To classify vegetation species at the pixel level in UAV imagery based on characteristics such as leaf shape, size, and color, the study employed the semantic segmentation method using the prominent U-net deep learning model. The research results indicated that it was possible to visually distinguish Pinus densiflora Siebold & Zucc, Quercus mongolica Fisch. ex Ledeb, and Quercus acutissima Carruth in 135 aerial images captured by UAV. Out of these, 104 images were used as training data for the deep learning model, while 31 images were used for inference. The optimization of the deep learning model resulted in an overall average pixel accuracy of 92.60, with mIoU at 0.80 and FIoU at 0.82, demonstrating the successful construction of a reliable deep learning model. This study is significant as a pilot case for the application of UAV and deep learning to monitor and manage representative species among climate-vulnerable vegetation, including Pinus densiflora, Quercus mongolica, and Quercus acutissima. It is expected that in the future, UAV and deep learning models can be applied to a variety of vegetation species to better address forest management.
Although the young spike of barley (Hordeum vulgare L.) or wheat (Triticum aestivum L.) is known as the most susceptible part to spring cold injury, the risk of cold injury is apt to be ignored in most breeding program due to the importance of early maturity. Based on these aspects, the types and inducing time, temperature conditions for induction and effects of cold injury on growth and yield in this study were investigated under greenhouse and field conditions through three years (1997-1999). In natural condition, low temperature around -2.4∼$-10.2^{\circ}C$ caused the death of plant. Several cold injury types such as partial degeneration of spike, partial discoloration of leaf, spike and awn, discoloration of culm and white spike were observed at low temperature around $-3.1^{\circ}C$. Low temperature around -2.4∼$-8.6^{\circ}C$ and 1.3-$7.6^{\circ}C$ caused degeneration and sterility of spike, respectively. Most materials were prepared to the spikelet foundation stage, spikelet differentiation stage, development stage of flower organ, booting stage and heading stage, which were known having risk for cold injury in field condition. Although most of the controlled stages were sensitive to the induced low temperature, booting stage was the most sensitive stage for cold injury. All of growth stages which were treated-heading stage, booting stage, development stage of flower organ, spikelet differentiation stage, spikelet foundation stage-were responded to low temperature treatment but the symptoms revealed were very specific according to the growth stages. Ears of plant in heading stage were discolored to white. Ears of plant in booting stage were degenerated in all or part of one. Plants in spikelet differentiation stage were sterile in all or part of one. When tried to detect the specific differences between normal and cold injured plants in appearance, spike length, distance between spike and flag leaf and the first internode length could be the critical points for occurrence of spike death caused by cold injury. In barley, the elongation of spike was stopped on 3.2cm after occurrence of spike degeneration, 4.7cm after occurrence of partial degeneration of spike, 5.0cm after occurrence of white spike. In wheat, it was stopped on 1.6cm after occurrence of stem death, 3.3cm after occurrence of spike degeneration, 8.3cm after occurrence of partial degeneration of spike, 8.1cm after occurrence of white spike, 7.5cm after partial discoloration of leaf and 9.3cm after partial discoloration of spike. The obtained results from low temperature treatment induced in growth chamber were similar to the field experiment, Beacuse the death of spikes was more when low temperature was treated two times than one times, the temperature should be upgrade to -3$^{\circ}C$ in order to get the same condition with field test.
This study was conducted to establish a systematized taxonomic problems of through the leaf morphological characters and leaf venation patterns, and stomatal cell patterns and cell characteristics of abaxial and adaxial surface of the leaflets by SEM, of 6 native species in Korea and 2 foreign species of the Genus Rhus in the Family Anacardiaceae. The results obtained from this study are summarized as followings: 1. Morphological study measured 32 characters of leaves from herbarium specimen and field-collected samples for each species. The results of cluster analysis based on the Euclidean distance showed that the species could be classified into 3 groups: R. sylvestris. R. typhina, R. succedanea: R. trichocarpa. R. chinensis. R. verniciflua: and R. ambigua. R. radicans subsp. orientale, Analysis of principal components showed 5 groups: The major factors in the first principal component group was length of petiole of the terminal leaflets, that in the second group angle of left side in the terminal leaflet bash, that in the third group area ratio between first and terminal leaflets, that in the forth group angle ratio between right and left side in the terminal leaflet base, and that in the fifth group was angle of main and secondary vein at midrib of terminal leaflet. Cumulative contribution by the first, second and third principal component group was explained with 82.6%, a large percent of all information. 2. The leaf venation pattern investigated using soft X-ray photography revealed clado-and reticulo-camptodromous types according to branching angle of the secondary vein. And three groups by the developing degree of secondary vein were R. trichocarpa, R. ambigua. R. chinensis, R. typhina; R. radicans subsp. onentale, R. succedanea, R. verniciflua: and R. sylvestris. Classification key for the Rhus of Korean-native Anacardiaceae was made by the venation pattern and devevoping degree of the secondary vein. 3. The stomatal cell patterns were greatly classified into paracytic and anomocytic types, specific among species according to stomatal and subsidiary cell patterns, and various differences among the species was determined. Microstructure of the adaxial and abaxial surfaces could be divided into synclinal and anticlinal cell wall patterns, and were specific-species. Stomatal cells of R. chinensis were surrounded with characterized villus-like cells.
Pathogenic variations of Xanthomonas campestris pv. oryzae were observed to Korean rice cultivars depending upon isolates in the same pathotype of the pathogen grouped by reactions of Japanese rice differentials. Using 201 Korean isolates of X. campestris pv oryzae 1,307 rice cultivars and promising lines were inoculated, and they were grouped into four varietal groups based on reactions. Of rice cultivars showing similar reactions to X. campestris pv. oryzae, five Korean rice cultivars Milyang 42, Hangangchalbyeo, Pungsanbyeo, Cheongcheongbyeo, and Milyang 23 were selected for classification of the pathogen into races The isolates only virulent to Milyang 23 were designated as race K1, the isolates virulent to Cheongcheongbyeo and Milyang 23 were designated as race K2, the isolates virulent to Pungsanbyeo, Cheongcheongbyeo and Milyang 23 were designated as race K3, the isolates virulent to Hangangchalbyeo, Pungsanbyeo, Cheongcheongbyeo and Milyang 23 were designated as race K4, and the isolates virulent to Milyang 42, Hangangchalbyeo, Pungsanbyeo, Cheongcheongbyeo and Milyang 23 were designated as race K5. Of 201 isolates tested, 114 isolates (56.7%) were classified as race K1, 47 isolates (23.4%) as race K2, 38 isolates (18.9%) as race K3, and 2 isolates (1.0%) as race K4. Reaction in each rice cultivar used as differentials in this test was also compared with that of rice differentials used for classification of X. campestris pv. oryzae into pathotypes in the previous work.
Kim, Sang-Yong;Kim, Sung-Hee;Shin, Hyunchur;Kim, Young-Dong
Korean Journal of Plant Taxonomy
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v.39
no.1
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pp.35-41
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2009
Astilbe (Saxifragaceae) is a genus well known for its disjunctive distribution in Asia and eastern North America. In this study, we reconstructed a molecular phylogeny of the genus using the sequences of ITS regions of nuclear ribosomal DNA. A total of 17 species representing major lineage of Astilbe and closely related taxa were included in the phylogenetic analyses. We obtained a Bayesian phylogenetic tree in which Saxifragopsis was positioned as a sister group to Astilbe. The Japanese endemic species, A.platyphylla was the most basal lineage within the genus. This species is well known for its distinct morphological features such as unisexual flowers, apetaly, and calyx with 7-11 lobes. Two species, A. biternata, a New World representative of the genus, and A. rivularis widely distributed in S. Asia, branched off early in the evolution of Astilbe. The remaining species formed a strongly supported core clade, which diverged into two robust geographical lineages: the first ("Japonica" clade) of species distributed in Japan, Taiwan, and Philippines and the other ("Rubra" clade), of taxa in China and Korea. The ITS phylogeny indicates that the Bering land bridges were the major route for the origin and dispersal of A. biternata. The two Taiwanese taxa and A. philippinensis were found to derive from the Japanese member, as the genus advanced southwards. The ITS phylogeny suggests that apetaly originated independently at least two times within the genus. Our results do not support Engler's classification system of the genus based on the leaf type (simple vs. compound), but reaffirm Hara's taxonomic idea which primarily considered the features of calyx.
In this study, we report the generation and analysis of 1,392 expressed sequence tags (ESTs) from Korean Stewartia (Stewartia koreana Nakai). A cDNA library was generated from the young leaf tissue and a total of 1,392 cDNA were partially sequenced. EST and unigene sequence quality were determined by computational filtering, manual review, and BLAST analyses. Finally, 1,301 ESTs were acquired after the removal of the vector sequence and filtering over a minimum length 100 nucleotides. A total of 893 unigene, consisting of 150 contigs and 743 singletons, was identified after assembling. Also, we identified 95 new microsatellite-containing sequences from the unigenes and classified the structure according to their repeat unit. According to homology search with BLASTX against the NCBI database, 65% of ESTs were homologous with known function and 11.6% of ESTs were matched with putative or unknown function. The remaining 23.2% of ESTs showed no significant similarity to any protein sequences found in the public database. Annotation based searches against multiple databases including wine grape and populus sequences helped to identify putative functions of ESTs and unigenes. Gene ontology (GO) classification showed that the most abundant GO terms were transport, nucleotide binding, plastid, in terms biological process, molecular function and cellular component, respectively. The sequence data will be used to characterize potential roles of new genes in Stewartia and provided for the useful tools as a genetic resource.
This study was conducted for preliminary survey and management support for Pine Wood Nematode (PWN) suppression. We took areal photographs of 6 areas for a total of 2,284 ha during 2 weeks period from 15/02/2016, and produced 6 ortho-images with a high resolution of 12 cm GSD (Ground Sample Distance). Initially we classified 423 trees suspected for PWN infection based on the ortho-images. However, low accuracy was observed due to the problems of seasonal characteristics of aerial photographing and variation of forest stands. Therefore, we narrowed down 231 trees out of the 423 trees based on the initial classification, snap photos, and flight information; produced thematic maps; conducted field survey using GNSS; and detected 23 trees for PWN infection that was confirmed by ground sampling and laboratory analysis. The infected trees consisted of 14 broad-leaf trees, 5 pine trees (2 Pinus rigida), and 4 other conifers, showing PWN infection occurred regardless of tree species. It took 6 days for 2.3 men from to start taking areal photos using UAV (Unmanned Aerial Vehicle) to finish detecting PNW (Pine Wood Nematode) infected tress for over 2,200 ha, indicating relatively high efficacy.
A fixed-precision-level sampling plan was developed to establish control of the two-spotted spider mite, Tetranychus urticae, in two strawberry greenhouses (conventional plot, natural enemy plot). T. urticae was sampled by taking a three-leaflet leaf (1 stalk) from each plant (3 three-leaflet leaves) from each sampling position. Each leaflet was divided into three different units (1-leaflet, 2-leaflet, and 3-leaflet units) to compare relative net precision (RNP) values for selection of the appropriate sampling unit. The relative net precision values indicated that a 1-leaflet unit was more precise and cost-efficient than other units. The spatial distribution analysis was performed using Taylor's power law (TPL). Homogeneity of the TPL parameters in each greenhouse was evaluated by using the analysis of covariance (ANCOVA). A fixed-precision-level sequential sampling plan was developed using the parameters of TPL generated from the combined data of the conventional plot and natural enemy plot in a 1-leaflet sampling unit. Sequential classification sampling plans were also developed using the action threshold of 3 and 10 mites for pooled data. Using the results obtained in the independent data, simulated validation of the developed sampling plan by Resampling validation for sampling plan (RVSP) indicated a reasonable level of precision.
Eclipta prostrata and E. alba are annual herbal medicinal plants and have been used as Chinese medicinal tonics. Both species are widely distributed in tropical and subtropical regions as well as in Korea. Both species have similar morphological features but E. alba has smoother leaf blade margins compared with E. prostrata. Although both species are utilized as oriental medicines, E. prostrata is more widely used than E. alba. Morphological semblances have confounded identification of either species. Here, we report the complete chloroplast genomes of both species to provide an authentication system between the two species and understand their diversity. Both chloroplast genomes were 151,733-151,757 bp long and composed of a large single copy (83,285-83,300 bp), a small single copy (18,283-18,346 bp), and a pair of inverted repeats (25,075-25,063 bp). Gene annotation revealed 80 protein coding genes, 30 tRNA genes and four rRNA genes. A phylogenetic analysis revealed that the genus Eclipta is grouped with Heliantheae tribe species in the Asteraceae family. A comparative analysis verified 29 InDels and 58 SNPs between chloroplast genomes of E. prostrata and E. alba. The low chloroplast genome sequence diversity indicates that both species are really close to each other and are not completely diverged yet. We developed six DNA markers that distinguish E. prostrata and E. alba based on the polymorphisms of chloroplast genomes between E. prostrata and E. alba. The chloroplast genome sequences and the molecular markers generated in this study will be useful for further research of Eclipta species and accurate classification of medicinal herbs.
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