• Title/Summary/Keyword: Large-scale Analysis Data

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Identification and Validation of Circulating MicroRNA Signatures for Breast Cancer Early Detection Based on Large Scale Tissue-Derived Data

  • Yu, Xiaokang;Liang, Jinsheng;Xu, Jiarui;Li, Xingsong;Xing, Shan;Li, Huilan;Liu, Wanli;Liu, Dongdong;Xu, Jianhua;Huang, Lizhen;Du, Hongli
    • Journal of Breast Cancer
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    • v.21 no.4
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    • pp.363-370
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    • 2018
  • Purpose: Breast cancer is the most commonly occurring cancer among women worldwide, and therefore, improved approaches for its early detection are urgently needed. As microRNAs (miRNAs) are increasingly recognized as critical regulators in tumorigenesis and possess excellent stability in plasma, this study focused on using miRNAs to develop a method for identifying noninvasive biomarkers. Methods: To discover critical candidates, differential expression analysis was performed on tissue-originated miRNA profiles of 409 early breast cancer patients and 87 healthy controls from The Cancer Genome Atlas database. We selected candidates from the differentially expressed miRNAs and then evaluated every possible molecular signature formed by the candidates. The best signature was validated in independent serum samples from 113 early breast cancer patients and 47 healthy controls using reverse transcription quantitative real-time polymerase chain reaction. Results: The miRNA candidates in our method were revealed to be associated with breast cancer according to previous studies and showed potential as useful biomarkers. When validated in independent serum samples, the area under curve of the final miRNA signature (miR-21-3p, miR-21-5p, and miR-99a-5p) was 0.895. Diagnostic sensitivity and specificity were 97.9% and 73.5%, respectively. Conclusion: The present study established a novel and effective method to identify biomarkers for early breast cancer. And the method, is also suitable for other cancer types. Furthermore, a combination of three miRNAs was identified as a prospective biomarker for breast cancer early detection.

Construction of Mine Geospatial Information by Total Station and 3D Laser Scanner (토털스테이션과 3D 레이저 스캐너에 의한 광산공간정보 구축)

  • Park, Joon-Kyu;Lee, Keun-Wang
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.20 no.3
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    • pp.520-525
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    • 2019
  • Mines are an important infrastructure for securing resources, but safety problems can arise in the course of operation. Recently, the mining process is very complicated due to the large scale and mechanization. Therefore, it is necessary to construct accurate geospatial information on mine for systematic and safe mine operation. The geospatial information construction using the existing total station has a disadvantage that a lot of work time is required because the target must be collimated and measured. In this study, the data of the mines were acquired with the total station and the 3D laser scanner, and the mine spatial information was constructed by using the shape based registration method. By using the static scanner data of some area applying the reference point surveying result of the total station, it was possible to construct the accurate result on the wide area acquired by the mobile scanner effectively. Also, the accuracy of the constructed geospatial information was evaluated and the deviation of mean 0.083m was shown. Point cloud products constructed through the research can contribute to the efficiency improvement of mine management by enabling quantitative analysis such as visualization of mine shape, distance, area and slope, and automation of drawing creation for cross section shape.

Monitoring Urban Ecological corridors in Gwanggyo New Town Using Camera Trapping (카메라트래핑을 활용한 광교신도시 내 도시형 생태통로 모니터링)

  • Park, Il-Su;Kim, Whee-Moon;Kim, Seoung-Yeal;Park, Chan;Song, Won-Kyong
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.24 no.1
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    • pp.69-80
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    • 2021
  • The new town in Korea, developed as a large-scale housing plan, has created urban ecological corridors to provide habitat and movement routes to wildlife and to promote natural ecological flow. This study aimed to investigate the use of wildlife in 10 ecological corridors in Gwanggyo New Town through camera trap technology and confirm effectiveness by identifying environmental factors affecting the use of wildlife's urban ecological corridors. Our researchers installed 20 unmanned sensor cameras at each the entrance and exit of the ecological corridors, and monitored urban wildlife for 10 weeks. According to the monioring results, the main species in Gwanggyo New Town were identified not only raccons, cats, water deer, korean hare and avain but also magpies, dove, eurasian tree sparrow, ring-necked pheasant, and eurasian jay. The number of uses ecological corridors of urban residents was 801(13.49%), as high as that of urban wildlife (1,140, 19.20%), which was judged to have disturbed the use of ecological corridors by wildlife. However, most dominant species of urban wildlife are nocturnal so that, it was judged that they share home range with urban residents at a time interval. In addition, according to the correlation analysis results between the mammal using rate of the urban ecological corridors and environmental factors(ecological corridor-specific length, ecological corridor-specific width, cover degree, shielding degree, connected green area, separation of movement routes, and presence of streetlights), environmental factors were not statistically significant. However, the more the area of green space connected to ecological corridors, the more increasing the mammal using rate of ecological corridor(r=0.71, p<0.05). Therefore, the area of green space connected to the ecological corridors that is associated with rate of wildlife using corridors should be considered as a priority when developing an urban ecological corridors. In the future, this study will extend the observation period of the ecological corridors and continuously accumulate data by adding the number of observation cameras. Furthermore, it is expected that the results of this study can be used as basic data for the standards for urban ecological corridors installation.

Spatial Analysis of Wind Trajectory Prediction According to the Input Settings of HYSPLIT Model (HYSPLIT 모형 입력설정에 따른 바람 이동경로 예측 결과 공간 분석)

  • Kim, Kwang Soo;Lee, Seung-Jae;Park, Jin Yu
    • Korean Journal of Agricultural and Forest Meteorology
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    • v.23 no.4
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    • pp.222-234
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    • 2021
  • Airborne-pests can be introduced into Korea from overseas areas by wind, which can cause considerable damage to major crops. Meteorological models have been used to estimate the wind trajectories of airborne insects. The objective of this study is to analyze the effect of input settings on the prediction of areas where airborne pests arrive by wind. The wind trajectories were predicted using the HYbrid Single-Particle Lagrangian Integrated Trajectory (HYSPLIT) model. The HYSPLIT model was used to track the wind dispersal path of particles under the assumption that brown plant hopper (Nilaparvata lugens) was introduced into Korea from sites where the pest was reported in China. Meteorological input data including instantaneous and average wind speed were generated using meso-scale numerical weather model outputs for the domain where China, Korea, and Japan were included. In addition, the calculation time intervals were set to 1, 30, and 60 minutes for the wind trajectory calculation during early June in 2019 and 2020. It was found that the use of instantaneous and average wind speed data resulted in a considerably large difference between the arrival areas of airborne pests. In contrast, the spatial distribution of arrival areas had a relatively high degree of similarity when the time intervals were set to be 1 minute. Furthermore, these dispersal patterns predicted using the instantaneous wind speed were similar to the regions where the given pest was observed in Korea. These results suggest that the impact assessment of input settings on wind trajectory prediction would be needed to improve the reliability of an approach to predict regions where airborne-pest could be introduced.

Assessment of a fresh submarine groundwater discharge in eastern Jeju Island using analytic seawater intrusion models (해수침투 해석해 기반 제주 동부 담해저 지하수 유출의 정량적 산정)

  • Kim, Il-Hwan;Chang, Sun Woo
    • Journal of Korea Water Resources Association
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    • v.55 no.12
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    • pp.1011-1020
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    • 2022
  • Previous studies for the assessment of submarine groundwater discharge (SGD) were perfomed for areas where a large amount of SGD was observed. Newly developed assessment methods were proposed that was based on an analytic solution using sharp interface model. The proposed mathematical equations used the existing observed groundwater level and hydrogeological data of Jeju Island as input data. The quantitatively assessed FSGD values were compared to the basin-scale recharge estimation values in Seong-San area in eastern Jeju. As a result of the study, it was estimated that the amount of FSGD in the Seongsan area ranges from about 2.65 to 9.15% of the amount of areal-recharge. Through the analysis of the FSGD combined with the analytic model, it is to be provided as a scientific tool to establish a more reasonable coastal water resource management plan.

A Reflection of Aging Society in Online Communities: An Exploratory Study on Changes in Conversation Style and Language Usage (온라인 커뮤니티에서 보여지는 노령화 사회의 단면: 대화 방식과 사용 언어의 변화에 대한 탐색적 연구)

  • Jung Lee;Jinyoung Han;Juyeon Ham
    • Journal of Intelligence and Information Systems
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    • v.29 no.4
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    • pp.51-68
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    • 2023
  • With the emergence of the internet and the increasing use of online communities for over 20 years, the age range of users has also been rising. This study explores the linguistic changes that have occurred as the user age in online communities has increased. To do this, data was collected and analyzed from an online community that has been actively operating, despite new member registrations being closed nine years ago. By comparing the posts over an 11-year period from 2012 to 2022, changes such as an increase in average comments, a decrease in interrogative sentences, and a decrease in imperative statements were observed. The study also proposed loneliness due to aging and a decline in curiosity and confidence as potential causes of these changes. In South Korea, which is rapidly entering an aging society unprecedentedly fast on a global scale, the increase in single-person households has evolved loneliness from a personal issue to a social problem, manifested in an increase in solitary deaths and reclusive individuals. This research sheds light on one aspect of these social phenomena through the analysis of data from a large online community.

Structural Design and Performance Evaluation of a Mid-story Seismic Isolated High-Rise Building

  • Tamari, Masatoshi;Yoshihara, Tadashi;Miyashita, Masato;Ariyama, Nobuyuki;Nonoyama, Masataka
    • International Journal of High-Rise Buildings
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    • v.6 no.3
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    • pp.227-235
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    • 2017
  • This paper describes some of the challenges for structural design of a mid-story seismic isolated high-rise building, which is located near Tokyo station, completed in 2015. The building is a mixed-use complex and encompasses three volumes: one substructure including basement and lower floors, and a pair of seismic isolated superstructures on the substructure. One is a 136.5m high Main Tower (office use), and the other is a 98.5 m high South Tower (hotel use). The seismic isolation systems are arranged in the $3^{rd}$ floor of the Main Tower and $5^{th}$ floor of the South Tower, so that we call this isolation system as the mid-story seismic isolation. The primary goal of the structural design of this building was to secure high seismic safety against the largest earthquake expected in Tokyo. We adopted optimal seismic isolation equipment simulated by dynamic analysis to minimize building damage. On the other hand, wind-induced vibration of a seismic isolated high-rise building tends to be excited. To reduce the vibration, the following strategies were adopted respectively. In the Main Tower with a large wind receiving area, we adopted a mechanism that locks oil dampers at the isolation level during strong wind. In the South Tower, two tuned mass dampers (TMDs) are installed at the top of the building to control the vibration. In addition, our paper will also report the building performance evaluated for wind and seismic observation after completion of the building. In 2016, an earthquake of seismic intensity 3 (JMA scale) occurred twice in Tokyo. The acceleration reduction rate of the seismic isolation level due to these earthquakes was approximately 30 to 60%. These are also verified by dynamic analysis using observed acceleration data. Also, in April 2016, a strong wind exceeding the speed of 25m/s occurred in Tokyo. On the basis of the record at the strong wind, we confirmed that the locking mechanism of oil damper worked as designed.

Numerical Analysis of Molten Carbonate Fuel Cell Stack Using Computational Fluid Dynamics (CFD를 이용한 용융탄산염 연료전지 스택의 수치모사)

  • Lee, Kab-Soo;Cho, Hyun-Ho
    • Journal of the Korean Electrochemical Society
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    • v.8 no.4
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    • pp.155-161
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    • 2005
  • In this paper, commercial CFD program FLUENT v5.3 is used for simulation of MCFC stack. Besides using conservation equations included in FLUENT by default, mass change, mole fraction change and heat added or removed due to electrochemical reactions and water gas shift reaction are considered by adding several equations using user defined function. The stacks calculated are 6 and 25 kW class coflow stack which are composed of 20 and 40 unit cells respectively. Simulation results showed that pressure drop took place in the direction of gas flow, and the pressure drop of cathode side is more larger than that of anode side. And the velocity of cathode gas decreased along with the gas flow direction, but the velocity of anode gas increased because of the mass and volume changes by the chemical reactions in each electrodes. Simulated temperature profile of the stack tended to increase along with the gas flow direction and it showed similar results with the experimental data. Water gas shift reaction was endothermic at the gas inlet side but it was exothermic at the outlet side of electrode respectively. Therefore water gas shift reaction played a role in increasing temperature difference between inlet and outlet side of stack. This results suggests that the simulation of large scale commercial stacks need to consider water gas shift reaction.

An Efficient Algorithm for Betweenness Centrality Estimation in Social Networks (사회관계망에서 매개 중심도 추정을 위한 효율적인 알고리즘)

  • Shin, Soo-Jin;Kim, Yong-Hwan;Kim, Chan-Myung;Han, Youn-Hee
    • KIPS Transactions on Software and Data Engineering
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    • v.4 no.1
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    • pp.37-44
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    • 2015
  • In traditional social network analysis, the betweenness centrality measure has been heavily used to identify the relative importance of nodes. Since the time complexity to calculate the betweenness centrality is very high, however, it is difficult to get it of each node in large-scale social network where there are so many nodes and edges. In our past study, we defined a new type of network, called the expanded ego network, which is built only with each node's local information, i.e., neighbor information of the node's neighbor nodes, and also defined a new measure, called the expanded ego betweenness centrality. In this paper, We propose algorithm that quickly computes expanded ego betweenness centrality by exploiting structural properties of expanded ego network. Through the experiment with virtual network used Barab$\acute{a}$si-Albert network model to represent the generic social network and facebook network to represent actual social network, We show that the node's importance rank based on the expanded ego betweenness centrality has high similarity with that the node's importance rank based on the existing betweenness centrality. We also show that the proposed algorithm computes the expanded ego betweenness centrality quickly than existing algorithm.

Analysis of Long-Term Wave Distribution at Jeju Sea Based on SWAN Model Simulation (SWAN모델을 이용한 제주해역 장기 파랑분포 특성 연구)

  • Ryu Hwangjin;Hong Keyyong;Shin Seung-Ho;Song Museok;Kim Do Young
    • Journal of the Korean Society for Marine Environment & Energy
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    • v.7 no.3
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    • pp.137-145
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    • 2004
  • Long-term wave distribution at Jeju sea is investigated by a numerical simulation based on the thirdgeneration wave model SWAN (Simulating WAves Nearshore). The Jeju sea which retains relatively high wave energy density among Korean coastal regions is considered to be a suitable site for wave power generation and the efficiency of wave power generation is closely related to local wave characteristics. The monthly mean of a large-scale long-term wave data from 1979 to 2002, which is provided by Korea Ocean Research & Development Institute. is used as the boundary condition of SWAN model simulation with 1km grid. An analysis of wave distribution concentrates on the seasonal variation and spatial distribution of significant wave heights, mean wave directions and mean wave periods. Significant wave heights are higher in winter and summer and the west sea of Jeju appears relatively higher than east's. The highest significant wave height occurs at the northeast sea in winter and the second highest significant wave height appears at the southeast sea in summer, while the significant wave heights in spring and autumn are relatively low but homogeneous. The distribution of wave directions reveals that except the rear region influenced by wave refraction, the northwest wave direction is dominant in summer and the southeast in winter. Wave periods are longer in summer and winter and the west sea of Jeju appears relatively longer than east's. The longest wave period occurs at the west sea in winter, and in summer it appears relatively homogeneous with a little longer period at the south sea.

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