• Title/Summary/Keyword: LMA-map

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Genome-wide association study for loin muscle area of commercial crossbred pigs

  • Menghao Luan;Donglin Ruan;Yibin Qiu;Yong Ye;Shenping Zhou;Jifei Yang;Ying Sun;Fucai Ma;Zhenfang Wu;Jie Yang;Ming Yang;Enqin Zheng;Gengyuan Cai;Sixiu Huang
    • Animal Bioscience
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    • v.36 no.6
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    • pp.861-868
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    • 2023
  • Objective: Loin muscle area (LMA) is an important target trait of pig breeding. This study aimed to identify single nucleotide polymorphisms (SNPs) and genes associated with LMA in the Duroc×(Landrace×Yorkshire) crossbred pigs (DLY). Methods: A genome-wide association study was performed using the Illumina 50K chip to map the genetic marker and genes associated with LMA in 511 DLY pigs (255 boars and 256 sows). Results: After quality control, we detected 35,426 SNPs, including six SNPs significantly associated with LMA in pigs, with MARC0094338 and ASGA0072817 being the two key SNPs responsible for 1.77% and 2.48% of the phenotypic variance of LMA, respectively. Based on previous research, we determined two candidate genes (growth hormone receptor [GHR] and 3-oxoacid Co A-transferase 1 [OXCT1]) that are associated with fat deposition and muscle growth and found further additional genes (MYOCD, ARHGAP44, ELAC2, MAP2K4, FBXO4, FBLL1, RARS1, SLIT3, and RANK3) that are presumed to have an effect on LMA. Conclusion: This study contributes to the identification of the mutation that underlies quantitative trait loci associated with LMA and to future pig breeding programs based on marker-assisted selection. Further studies are needed to elucidate the role of the identified candidate genes in the physiological processes involved in LMA regulation.

Derivation of Snyder's Synthetic Unit Hydrograph Using Fractal Dimension (프랙탈 차원을 이용한 스나이더 합성단위유량도 관계식 유도)

  • Go, Yeong-Chan
    • Journal of Korea Water Resources Association
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    • v.32 no.3
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    • pp.291-300
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    • 1999
  • The Snyder's synthetic unit hydrograph method is selected to apply the concept of the fractal dimension by stream order for the practicable rainfall-runoff generation, and fourth types of the Snyder's relation are derived from topographic and observed unit hydrograph data of twenty-nine basins. As a result of the analysis of twenty-nine basins and the verification of two basins, the Snyder's relation which considers the fractal dimension of the stream length and uses calculated unit hydrograph data shows the best result. The concept of the fractal dimension by stream order is applied to the Snyder's synthetic unit hydrograph method. The topographic factors, used in the Snyder's synthetic unit hydrograph method, which have a property of the stream length like $L_{ma}$ (mainstream length) and $L_{ca}$ (length along the mainstream to a point nearest the watershed centroid) were considered. In order to simplify the fractal property of stream length, it is supposed that $L_{ma}$ has not the fractal dimension and the stream length between $L_{ma}$ and ($L_{ma}\;-\;L_{ca}$) has the fractal dimension of 1.027. From the utilization of this supposition, a new Snyder's relation which consider the fractal dimension of the stream length occurred by the map scale used was finally suggested.

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