• Korean Journal of Fisheries and Aquatic Sciences
• /
• v.43 no.6
• /
• pp.693-704
• /
• 2010

Seasonal variation in species composition around Dokdo, East Sea of Korea, was investigated using trammel-net catches, from 2006 to 2009. A total of 53 fish species belonging to 23 families in 12 orders were captured; the orders Perciformes (12 families, 22 species) and Scorpaeniformes (four families, 22 species) were dominant. Between 2008 and 2009, 43 species were collected by trammel net. The number of species was highest in August 2009 (25 species) and lowest in February 2009 (11 species). The number of individuals and total biomass peaked in November 2009. Diversity indices for fish catches were highest in August 2008 (2.4368) and lowest in November 2009 (0.4253). The dominant species were Thamnaconus modestus and Sebastes schlegeli. Hierarchical clustering analysis showed five fish groups, with frequency and number of individuals similar to results of correspondence analysis (CA), which showed a closer relationship to the year term than the season term. CA showed that temperature was an important factor influencing fish species richness and abundance. Three main fish assemblage types coexisted around Dokdo: an East Sea coastal fish assemblage, a subtropical fish assemblage, and a cold water fish assemblage.

• Korean Journal of Weed Science
• /
• v.13 no.2
• /
• pp.164-172
• /
• 1993

About 196 weed species composed of 31 annuals, 38 biennials and 127 perennials belonging to 53 families were identified from 90 buryingplaces in Kyungpook province on June and September, 1992. Compositae was the most widely occuring family covering 34 species, followed by 27 species in graminae, 17 species in leguminosae, and 10 species in rosaceae, 8 species in liliaceae ranunculaceae, 7 species in caryophyllaceae cruciferae, 6 species in labiate polygonaceae, 4 species in crassulaceae cyperaceae, and the rest 41 families having 1 to 3 species. The dominant weed species occured in the buryingplaces based on importance value and frequency were Imperata cylindrica, Artemisia princeps, Viola mandchrica, Erigeron annuus, Erigron canadensis, Rubus parvifolius and Prunella vulgaris.

• Journal of the Korean Institute of Landscape Architecture International Edition
• /
• no.1
• /
• pp.75-83
• /
• 2001

Residents of urban area like to be near rural animals during their daily life, so it is important conserve the suburban Yato landscape in Japan. This study targets the species of frogs that are commonly found in Yato paddies. It is necessary to various frogs inhabiting in Yato, because frogs are popular among Japanese, who as children enjoy capturing tadpoles and frogs. Its purpose is to clarify how that composition of frog species changes when the functionality of a frog habitat is diminished by urbanization. The survey, conducted in the Eastern Kanagawa area in central Japan, determined the distribution of each species of frog in grid cells measuring 0.5-$\textrm{km}^2$. It hsows wide distributing species (Hyla japonica; they always inhabit in all paddies), the middle range distributing species (Rhacophorus schlegelii and Rana porosa p.), the limited range distributing species (R. rugosa; they are most critical species, sine they are recognized only two cells), and so on. Correspondence analysis based on the frog species composition in each cell was performed to ascertain the adaptability of each species to various paddy field conditions. The results allowed us to classify cells into four groups according to the composition of the inhabiting species. And we recognized that the process by which frogs disappear occurs in reaction to either of two patterns of change. As paddy fields are improved by farmland consolidation, R. rugosa, R. ornativentris, R. japonica, and Bufo. japonica f. decline rapidly. In plateau areas, a smore andmore paddies are converted into strong, well-drained fields, only H. japonica and R. porosa p. remain. But in hilly areasd, the species composition becomes only H. japonica and R. schlegelii. Finally, we discuss the concept of ecological urban design in the context of the conservation of frog species in Yato paddies.

• Korean Journal of Environment and Ecology
• /
• v.36 no.1
• /
• pp.56-71
• /
• 2022

This study was conducted to build basic terrestrial insect data for the management of the persimmon plantations in the Sangju dried persimmon agricultural area. The survey identified terrestrial insect species were 7 orders, 77 families, and 1,925 individuals of 177 species. And the number of species that appeared in each village was in the order of Seoman II Village in Naeseo Township > Seoman I Village in Naeseo Township > Soeun Village in Oenam Township. Hemiptera and Coleoptera predominated throughout the site due to the characteristics of the cultivated land. The special species were 13 Korean endemic species, 2 vulnerable (VU) species, 22 least concern (LC) species, 42 not-evaluated (NE) species on the national red list, and 2 species of ecosystem disturbance wildlife. A result of the cluster analysis identified the Ectmetopterus micantulusas the dominant species and Ceutorhynchus albosuturalisas the subdominant species. The species diversity (H') was 1.1636-1.6022, evenness (J') was 0.6748-0.7611, and dominance (D) was in the range of 0.2389-0.3252.

• Korean Journal of Agricultural Science
• /
• v.43 no.1
• /
• pp.1-13
• /
• 2016

Climate changes are shifting the perception of C4 photosynthetic crops due to their superior adaptability to harsh conditions. The tribe Andropogoneae includes some economically important grasses, such as Zea mays, Sorghum bicolor, Miscanthus spp., and Saccharum spp., representing C4 photosynthetic grasses. Although the Andropogoneae grasses diverged fairly recently, their genomic structures are remarkably different from each other. As previously reported, the family Poaceae shares the pan-cereal duplication event occurring ca. 65 MYA. Since this event, Sorghum bicolor has never experienced any additional duplication event. However, some lineage-specific duplication events were reported in Z. mays and Saccharum spp., and, more recently, it was revealed that a shared allotetraploidization event occurred before the divergence between Miscanthus and Saccharum (but after the divergence from S. bicolor), which provided important clues to those two species having large genome sizes with complicated ploidy numbers. The complex genomic structures of sugarcane and Miscanthus (defined as the Saccharum complex along with some other taxa) have had a limiting effect on the use of their molecular information in breeding programs. For the last decade, genomics-associated technologies have become an important tool for molecular crop breeding (genomics-assisted breeding, GAB), but it has not been directly applied to sugarcane and Miscanthus due to their complicated genome structures. As genomics research advances, molecular breeding of those crops can take advantage of technical improvements at a reasonable cost through comparative genomic approaches. Active genomic research of non-model species using closely related model species will facilitate the improvement of those crops in the future.

• The Plant Pathology Journal
• /
• v.34 no.1
• /
• pp.11-22
• /
• 2018

Type VI secretion system (T6SS) has been discovered in a variety of gram-negative bacteria as a versatile weapon to stimulate the killing of eukaryotic cells or prokaryotic competitors. Type VI secretion effectors (T6SEs) are well known as key virulence factors for important pathogenic bacteria. In many Burkholderia species, T6SS has evolved as the most complicated secretion pathway with distinguished types to translocate diverse T6SEs, suggesting their essential roles in this genus. Here we attempted to detect and characterize T6SSs and potential T6SEs in target genomes of plant-associated and environmental Burkholderia species based on computational analyses. In total, 66 potential functional T6SS clusters were found in 30 target Burkholderia bacterial genomes, of which 33% possess three or four clusters. The core proteins in each cluster were specified and phylogenetic trees of three components (i.e., TssC, TssD, TssL) were constructed to elucidate the relationship among the identified T6SS clusters. Next, we identified 322 potential T6SEs in the target genomes based on homology searches and explored the important domains conserved in effector candidates. In addition, using the screening approach based on the profile hidden Markov model (pHMM) of T6SEs that possess markers for type VI effectors (MIX motif) (MIX T6SEs), 57 revealed proteins that were not included in training datasets were recognized as novel MIX T6SE candidates from the Burkholderia species. This approach could be useful to identify potential T6SEs from other bacterial genomes.

• Journal of the Korea Furniture Society
• /
• v.10 no.1
• /
• pp.1-12
• /
• 1999

Of the vast number of plant taxa in the world, the wood is one of the most useful resources. It is important to identify the fibers of wood and pulp for the plant taxonomy and for the uses, but we do not have enough information on them, on them, especially for the computerizd data. The fiber identification is one of the difficult tasks. In addition to the plant taxonomy and the fiber-using industries, such identification is also important in many other fields, including education. document examiners, etc. For these purpose, the fibers should be exactly distinguished. The TISS system I have programed to identify various woods would also be useful in the identification of fibers by the genus and species in the features of unknown samples and in searching the features of a species based on its scientific name. Such searching programs are being developed in many other countries with a view to searching for the species name by using the features of the cells of the woody materials. With the survey of all the available literature, the features of the fibers of 124 species both of softwood and hardwood were examined under the electron and optical microscopies. Each species were coded and carded by the feature, and the databases were built. The microscopic were inputted into a personal computer program called and by a slide film scanner. The new computer program called TISS 2 was developed using C computer language. Korean language fonts were added to the TISS 2. The TISS 2 can be in adding and searching a image of fiber features both of a known fiber and an unknown fiber. The databases were corded for the DELTA system with was developed by Dallwitz and Paine in Australia, 1986.

• Parasites, Hosts and Diseases
• /
• v.55 no.1
• /
• pp.71-76
• /
• 2017

This is the first study to report Chrysomya pinguis (Walker) and Lucilia porphyrina (Walker) (Diptera: Calliphoridae) as forensically important blow fly species from human cadavers in Thailand, in addition to Chrysomya villeneuvi (Patton) already known in Thailand. In 2016, a fully decomposed body of an unknown adult male was discovered in a high mountainous forest during winter in Chiang Mai province. The remains were infested heavily with thousands of blow fly larvae feeding simultaneously on them. Morphological identification of adults reared from the larvae, and molecular analysis based on sequencing of 1,247 bp partial mitochondrial cytochrome c oxidase subunit 1 gene (CO1) of the larvae and puparia, confirmed the above mentioned 3 species. The approving forensic fly evidence by molecular approach was described for the first time in Thailand. Moreover, neighbor-joining phylogenetic analysis of the CO1 was performed to compare the relatedness of the species, thereby affirming the accuracy of identification. As species of entomofauna varies among cases in different geographic and climatic circumstances, C. pinguis and L. porphyrina were added to the list of Thai forensic entomology caseworks, including colonizers of human remains in open, high mountainous areas during winter. Further research should focus on these 3 species, for which no developmental data are currently available.

• Ocean and Polar Research
• /
• v.31 no.4
• /
• pp.349-357
• /
• 2009

Ballast water is widely recognized as a serious environmental problem due to the risk of introducing non-indigenous aquatic species. In this study we aimed to investigate measures which can minimize the transfer of aquatic organisms from ballast water. Securing more reliable technologies to determine the viability of aquatic organisms is an important initiative in ballast water management systems. To evaluate the viability of marine phytoplankton, we designed the staining methods of fluorescein diacetate (FDA) and Calcein-AM assay on each target species belonging to different groups, such as bacillariphyceae, dinophyceae, raphidophyceae, chrysophyceae, haptophyceae and chlorophyceae. The FDA method, which is based on measurements of cell esterase activity using a fluorimetric stain, was the best dye for determining live cells of almost all phytoplankton species, except several diatoms tested in this study. On the other hand, although fluorescence of Calcein-AM was very clear for a comparatively longer time, green fluorescence per cell volume was lacking in most of the tested species. According to the Flow CAM method, which is a continuous imaging technique designed to characterize particles, green fluorescence values of stained cells by FDA were significantly higher than those of Calcein-AM treatments and control, implying that the Flow CAM using FDA assay could be adapted as an important tool for distinguishing living cells from dead cells. Our results suggest that the FDA and Calcein-AM methods can be adapted for use on phytoplankton, though species-specific characters are greatly different from one organism to another.

• Journal of Korean Society of Forest Science
• /
• v.96 no.2
• /
• pp.160-169
• /
• 2007

The data used to develop distance-independent individual models for natural mixed forests were collected from 712 remeasured permanent sample plots (25,526 trees) of 10-year periodic from 1990 to 2000 in Baihe Forest Bureau of Changbai Mountains, northeast China. Based on analyzing relationship between diameter increment of individual trees with tree size, competitive status, and site condition, the diameter growth models for individual trees of 15 species growing in mixed-species uneven-aged forest stands, that have simple form, good predicting precision, and easily applicable, were developed using stepwise regression method. The main variables influencing on diameter increment of individual trees were tree size and competition, however, the site conditions were not significantly related with diameter increment. The tree size variables (lnDBH and $DBH^2$) were the most significant and important predictors of diameter growth existing in all 15 growth models. The diameter increment was directly proportional to tree diameter for each species. For the competitive factors in growth model, the relative diameter (RD), canopy closure (P), and the ratio of diameter of subject tree with maximum diameter (DDM) were contributed to the diameter increment at a certain extent. Other measures of stand density, such as basal area of stand (G) and stand density index (SDI), were not significantly influenced on diameter increment. Site factors, such as site index, slope and aspect were not important to diameter increment and excluded in the final models. The total variance explained by the final models of squared diameter increment ($R^2$) for all 15 species ranged from 35% to 72% and these results compared quit closely with those of Wykoff (1990) for mixed conifer stands. Using independent data set, validation measures were evaluated for predicting models of diameter increment developed in this study. The result indicated that the estimated precision was all greater than 94% and the models were suitable to describe diameter increment.