• Title/Summary/Keyword: ITS2 secondary structure

Search Result 191, Processing Time 0.032 seconds

A Human Immunodeficiency Virus Type 1 (HIV-1) Tat Cofactor Absent in Rodent Cells is a TAR-associated Factor

  • Lee, Im-soon;Shank, Peter R.
    • IMMUNE NETWORK
    • /
    • v.2 no.3
    • /
    • pp.150-157
    • /
    • 2002
  • Background: Although Tat plays a role as a potent transactivator in the viral gene expression from the Human Immunodeficiency Virus type 1 long terminal repeat (HIV-1 LTR), it does not function efficiently in rodent cells implying the absence of a human specific factor essential for Tat-medicated transactivation in rodent cells. In previous experiments, we demonstrated that one of chimeric forms of TAR (transacting responsive element) of HIV-1 LTR compensated the restriction in rodent cells. Methods: To characterize the nature of the compensation, we tested the effects of several upstream binding factors of HIV-1 LTR by simple substitution, and also examined the role of the configuration of the upstream binding factor(s) indirectly by constructing spacing mutants that contained insertions between Sp1 and TATA box on Tat-mediated transactivation. Results: Human Sp1 had no effect whereas its associated factors displayed differential effects in human and rodent cells. In addition, none of the spacing mutants tested overcame the restriction in rodent cells. Rather, when the secondary structure of the chimeric HIV-1 TAR construct was destroyed, the compensation in rodent cells was disappeared. Interestingly, the proper interaction between Sp1 and TATA box binding proteins, which is essential for Tat-dependent transcription, was dispensable in rodent cells. Conclusion: This result suggests that the human-specific Tat cofactor acts to allow Tat to interact effectively in a ribonucleoprotein complex that includes Tat, cellular factors, and TAR RNA, rather than be associated with the HIV-1 LTR upstream DNA binding factors.

A Study on the Home Education of Family with teenagers -A Focus of Developing the Scale on the Content of Home Education- (청소년기 자녀 가족의 가정교육 연구 -가정교육 내용에 관한 척도 개발을 중심으로-)

  • Wang, Seok Sun
    • Journal of Families and Better Life
    • /
    • v.15 no.2
    • /
    • pp.71-71
    • /
    • 1997
  • This study aims ai the extraction of what is universally to be taught in modern Korean Families and its scalization. That is, it attempts to provide the criterion by which we can determine what to teach adolescent in the family, not in society or school. For this purpose, this study firstly reviews the preceeding studies on the subject. As a result of the review, we postulate the hypothetical structure consisting of 11 domains. Secondary, we gather the parent's view on the topic by interviewing 496 parents with teenagers. On the basis of this study, we can construct the questionnaire(Likert scale; 5 point). After we conduct an extensive empirical research(346 parents) in order to generalize 195 items of the workedout questionnaire. We apply factor analysis(principal axis factoring, oblique (promax) rotation) in the verification of the validity. As the consequence, we select 66 items consisting, 10 factors, which explain 68% of common variance. We name the 10 educational factors extracted in the scale as follows ; The Sense of Value, Communal Society, Sex, Esteem for an ancestor & a traditional way of life, Parent-Child Relationship, the Culture life within the family, The Guide of Learning Way, Setting up the way of life, The control of one's life, Friendship. The reliability of the scale is the cronbach =0.91 which turns out to be satisfactory.

A Study on the Low-energy Large-aperture Electron Beam Generator (저에너지 대면적 전자빔 발생장치 개발에 관한 연구)

  • Jo, Ju-Hyeon;Choe, Yeong-Uk;Lee, Hong-Sik;Im, Geun-Hui;U, Seong-Hun;Lee, Gwang-Sik
    • The Transactions of the Korean Institute of Electrical Engineers C
    • /
    • v.48 no.12
    • /
    • pp.785-790
    • /
    • 1999
  • This research has been carried out to develop a low-energy large-aperture pulsed electron beam generator (LELA), 200keV 1A, for industrial applications. One of the most important feature of this electron beam generator is large electron beam cross section of $190cm^2$. Low energy electron beam generators have been used for water cleaning, flue gas cleaning, and pasteurization, etc. In these applications the cross sectionof the e-beam is related to reaction efficiency. Another important feature of this LELA EB generator is easy maintenance because of its simple structure and relatively low vacuum operation compared to the conventional EB generators. The conventional EB generators need to be scanned because the small cross section thermal electron emitters are used in the conventional EB generators which have small EB cross section. In this research, we use the secondary electrons generated by ion bombardment on the HV cathode surface as a electron source. Therefore we can make any shape of EB cross section without scanning.

  • PDF

CPV module characteristics using the secondary reflect mirror (2차 집광부에 반사형 구조를 적용한 CPV모듈)

  • Jeong, Byeong-Ho;Mustafizu, Mustafizul;Lee, Kang-Yeon;Kim, Nam-Oh;Choi, Nak-Il
    • Proceedings of the KIEE Conference
    • /
    • 2015.07a
    • /
    • pp.1080-1081
    • /
    • 2015
  • CPV system in the desert areas or areas near the equator, as is suitable for high-temperature region. As compared to silicon solar cells, CPV system have a high proportion of a BOS (balance of system). Solar cells because of its low proportion when designing a module technology is applied in a variety of ways. Applied to the CPV system is classified into two kinds of optical technology. One of those using fresnel lens uses refraction of light energy. The other is a mirror reflection of the structure using sprays. Both of these two ways to condense the sun to collect solar cell is a form of light. And goals by using a small solar cell materials is to produce more energy. This research proposes rational design approach to calculate proper system capacity in consideration of the aforementioned factors in CPV system.

  • PDF

Polyplex Formation of Calf Thymus DNA with Branched and Linear Polyethyleneimine

  • Han, Jung-Ho;Kim, Seog K.;Cho, Tae-Sub;Lee, Jae-Cheol;Joung, Hyun-Sook
    • Macromolecular Research
    • /
    • v.12 no.5
    • /
    • pp.501-506
    • /
    • 2004
  • We have investigated the spectral properties of DNA, including its electric absorption, circular and linear dichroism (CD and LD), and fluorescence emission, in the DNA-linear polyethyleneimine (LPEI) and DNA-branched polyethyleneimine (BPEI) complexes at various polymer concentrations. The spectral properties of both complexes are similar. We observed a relatively moderate change in the absorption and CD spectra at low amine/DNA phosphate (NIP) ratios (< 0.5), followed by a drastic collapse within the N/P range from 0.8 and 1.0. The absorption and CD spectra recovered as the N/P ratio increased to ca. 1.2. In contrast, the LD and emission of ethidium intercalated between the DNA bases decreased almost linearly at N/P ratios between 0.0 and 1.0. These spectra never recovered at higher N/P ratios. We believe that the moderate changes in the spectrum at low N/P ratios occurred because of electrostatic interactions between DNA and BPEI, while the collapsed spectra at N/P ratios between 0.5 and 1.5 occurred because of condensation/aggregation of the DNA. Considering the structure of the polymers, we suggest that the secondary amino group of LPEI and all three amino groups of BPEI are equally involved in DNA condensation.

A Study on the Classification of Yi Dynasty Documents and Records (고문서(古文書)의 유형별(類型別) 분류(分類)에 관한 연구(硏究))

  • Lee, Choon-Hee
    • Journal of the Korean BIBLIA Society for library and Information Science
    • /
    • v.6 no.1
    • /
    • pp.81-109
    • /
    • 1984
  • The purpose of this research is (i) to establish the principles particularly appropriate for the arrangement of archival collections is korea, and (ii) to produce a workable model of classification scheme in conformity with the established principles. The archival collections in korea are roughly devided into two groups as follows. (1) The collections of professional institutions of archives such as Korean National Archives. (2) The collections preserved by libraries, museums, and other similar institutions as a secondary collection, and these groups of collections are generally non-systematic collecting. For the arrangement of the former collections, the concept of "respect des fonds" which is universally accepted principies in archives are also applicable. But in case of the arrangement of the latter collections, the above mentioned principles are inappropriate because its collections a re built in separate pieces of documents and records without any relevance to the original function or structure of the corporation. Consequantly it is badly needed to make some devices for the arrangement of these archival collections since the archival collections of korea, in the majority of cases, belong to the latter. The author produced a tentative classification scheme, and adapted the korean traditional form (or type) of documents and records as a cardinal principle of the classification. The scheme is presented at the end of this paper.

  • PDF

Structural characterization of HBx-interacting protein using NMR spectroscopy

  • Lee Young-Tae;Kim Byoung-Kook;Kim Key-Sun;Choi Byong-Seok
    • Journal of the Korean Magnetic Resonance Society
    • /
    • v.9 no.2
    • /
    • pp.122-137
    • /
    • 2005
  • The hepatitis B virus X protein (HBx) is highly linked with liver diseases and the development of hepatocellular carcinoma. HBx-interacting protein (XIP) has been shown to abolish the transactivation functions of HBx. Here, we define the structural characteristics and HBx binding properties of XIP. Under physiological conditions, XIP was composed mainly of random-coils but significant helicity was induced in the hydrophobic condition. NMR spectroscopy defined the secondary structure of XIP in the presence of sodium dodecyl sulfate. Four putative helices were mapped to the amino acids 8-12, 32-38, 42-54 and 82-91. Any deletion of defined putative helices in XIP led to loss of binding to HBx, and truncated mutant lacking last putative helix decreased helicity more than that it could. Our results suggest that XIP requires its entire sequence for HBx binding and it may be under drastic conformational change when binds to HBx.

  • PDF

Structure and Evolution of a Numerically Simulated Thunderstorm Outflow (수치 모사된 뇌우 유출의 구조와 진화)

  • Kim, Yeon-Hee;Baik, Jong-Jin
    • Journal of the Korean earth science society
    • /
    • v.28 no.7
    • /
    • pp.857-870
    • /
    • 2007
  • The structure and evolution of a thunderstorm outflow in two dimensions with no environmental wind are investigated using a cloud-resolving model with explicit liquid-ice phase microphysical processes (ARPS: Advanced Regional Prediction System). The turbulence structure of the outflow is explicitly resolved with a high-resolution grid size of 50m. The simulated single-cell storm and its associated Kelvin-Helmholtz (KH) billows are found to have the lift stages of development maturity, and decay. The secondary pulsation and splitting of convective cells resulted from interactions between cloud dynamics and microphysics are observed. The cooled downdrafts caused by the evaporation of rain and hail in the relatively dry lower atmosphere result in thunderstorm cold-air outflow. The outflow head propagates with almost constant speed. The KH billows formed by the KH instability cause turbulence mixing from the top of the outflow and control the structure of the outflow. Ihe KH billows are initiated at the outflow head, and pow and decay as moving rearward relative to the gust front. The numerical simulation results of the ratio of the horizontal wavelength of the fastest growing perturbation to the critical shear-layer depth and the ratio of the horizontal wavelength of the billow to its maximum amplitude are matched well with the results of other studies.

Germanition, Shade Toarance and Community Characteristics on $\emph{Erigeron annuus}$ L.in Cheju (濟州 地域에서 개망초의 發芽 習性 및 耐陰性과 群落特性)

  • Lee, Ho-Joon;Kim, Tae-Sung;Byun, Doo-Weon
    • The Korean Journal of Ecology
    • /
    • v.15 no.2
    • /
    • pp.103-115
    • /
    • 1992
  • This dissertation, which has been prepared in the region of cheju(33o31'N, 126o32'E) from may,1987 to appril, 1989, is to elucidate the dominant characteristics of early stages in secondary succession, by examining the life history of erigeron annuus for the seeding depth of a seed was dependent upon the degree of shading. That is, on the area of ocm,the more tense the shading was, the more germination percentage was increased, while, in the case of 1.5cm, it was somewhat increased, when shading bwcame ess and less tense. The rosette of e. annuus, through its relative light intensity was decreased by shading, up to 5% of natural light, showed some strong shade tolerance, which had no difficulty in matter production. The species diversity of mixed-species community was the highest in the middle of April, the lowest in the last of may. The dominance index was the highest in the late may, the lowest in the middle of April. Toward the end of may, the occupation rate of dominance species was the highest. There was a neutral relationship between intraspecific and interspecific, owing to the differentiation of its niche, temporally and spatially. Productive structure of the community revealed a narrow leaf type which was concentratively distributed in the mid part of community height. The relative light intensity of community ground surface was 6.1%, the leaf inclination 60o,the extinction coefficient(k) 0.4, biomass of community 1,045.6 g.d.w./m2,T/Rratio 9.3, C/Frate 7.0 and sumgermanition, shade toarance and community characteristics on erigeron annuus l.in chejumed leaf area index 3.88. through the various life cycles o e.annuus, we can say that it decreases mortality of seeding caused by some stress and disturbance, for germination lasts for a long time at any opportunity available, and it promotes population growth. The strong shade tolerance of a rosette and the variableness of a life from differentiate the niche between intraspecific and interspecific within the community, and avoid the direct competition between them, thus poromoting community growth.

  • PDF

Expressed Protein Ligation of 5-Enolpyruvylshikimate-3-phosphate (EPSP) Synthase: An Application to a Protein Expressed as an Inclusion Body

  • Kim, Hak-Jun;Shin, Hee-Jae;Kim, Hyun-Woo;Kang, Sung-Ho;Kim, Young-Tae
    • Bulletin of the Korean Chemical Society
    • /
    • v.28 no.12
    • /
    • pp.2303-2309
    • /
    • 2007
  • Expressed protein ligation (EPL) technique, joining recombinantly expressed proteins to polypeptides, has been widely adopted for addressing various biological questions and for drug discovery. However, joining two recombinant proteins together is sometimes difficult when proteins are expressed insoluble and unrefoldable, because ligation-active proteins via intein-fusion are obtainable when they are folded correctly. We overcame this limitation coexpressing target protein with additional methionine aminopeptidase (MAP) which enhances removal of the initiation methionine of recombinantly expressed protein. Our approach demonstrated that two domains of 46 kDa 5-Enolpyruvylshikimate-3-phosphate (EPSP) synthase, a target of herbicide glyphosate, were successfully joined by native chemical ligation, although its C-terminal domain was expressed as an inclusion body. The intein-fused N-terminal fragment of EPSP synthase (EPSPSN, residues 1-237) was expressed and the ligation-active thioester tagged N-terminal fragment (EPSPSN-thioester) was purified using a chitin affinity chromatography and mercapto-ethanesulphonate (MESNA) as intein thiolysis reagent. Its Cterminal fragment (EPSPSC, residues Met237-238CYS-427), expressed as an inclusion body, was prepared from an additional MAP-expressing strain. Protein ligation was initiated by mixing ~1 mM of EPSPSN-thioester with ~2 mM of EPSPSCCYS (residues 238CYS-427). Also we found that addition of 2% thiophenol increased the ligation efficiency via thiol exchange. The ligation efficiency was ~85%. The ligated full-length EPSP synthase was dissolved in 6 M GdHCl and refolded. Circular dichroism (CD) and enzyme activity assay of the purified protein showed that the ligated enzyme has distinct secondary structure and ~115% specific activity compared to those of wild-type EPSP synthase. This work demonstrates rare example of EPL between two recombinantly expressed proteins and also provides hands-on protein engineering protocol for large proteins.