• Title/Summary/Keyword: ITS1-ITS4

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Molecular Identification of Asian Isolates of Medicinal Mushroom Hericium erinaceum by Phylogenetic Analysis of Nuclear ITS rDNA

  • Park, Hyuk-Gu;Ko, Han-Gyu;Kim, Seong-Hwan;Park, Won-Mok
    • Journal of Microbiology and Biotechnology
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    • v.14 no.4
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    • pp.816-821
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    • 2004
  • A reliable molecular phylogenetic method to identify Hericium erinaceum, the most industrially valuable species in the Hericium genus, was established. Sequencing and phylogenetic analyses of the PCR-amplified ITS and 5.8S rDNA from Hericium fungi, including 6 species and 23 isolates, showed that variation in nucleotide sequences and size exists in both ITS1 and ITS2 regions, but not in the 5.8S region. These two ITS regions provided different levels of information on the relationship of H. erinaceum to other Hericium species. Based on the ITS1 sequence, both the parsimony and neighbor joining trees clearly distinguished Asian H. erinaceum isolates from other Hericium species and isolates. The intraspecific divergence of the ITS2 region was suitable to dissect the Asian H. erinaceum isolates into a few groups.

고려시대의 비서성

  • 배현숙
    • Journal of Korean Library and Information Science Society
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    • v.7
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    • pp.57-84
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    • 1980
  • In the study of library history in our country, the history of the Koryo Dynasty is very important. The Pisosong, the first library to be operated by the government, was founded in 995 .A. D. Although research about the Pisosong indicated that it was located outside the palace the author felt that further investigation was needed. Might not the library be located inside the palace\ulcorner For this reason, this study examined 1) the historical background of the Pisosong, 2) changes in its structure and organization, 3) its organization and personnel, 4) its function and, 5) its relation to the Pigak and the Osowon. The findings of this study may be summarized as follows: 1) Pisosong was changed and reorganized 15 times by the end of the Koryo Dynasty. 2) Its functions were keeping official documents and books, buying, exchanging, publishing, editing, revising books, writing official documents for the king and, as a place to discuss ideas and sometimes to deliver lectures to the king. 3) Osowon was another institute which was equivalent in its function and role to the Pisosong. 4) The Pisosong was in all probability located inside the palace because there were very important books in it. It is assumed that its location should be a secure place. Also this would enable the library to be managed more conveniently. 5) The Pigak in the Koryo Dynasty must have been located inside the palace as the Piko in the Sung Dynasty in China was.

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Research of Application and Facilitation of BIM on Military Facilities (국방 군사시설의 BIM적용 및 활성화 방안 연구)

  • Gong, Keum-Rok
    • Journal of KIBIM
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    • v.7 no.4
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    • pp.1-7
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    • 2017
  • Since its beginning the military has continued updating its equipments and facilities by modernizing and expanding them. However, with rapidly growing technologies and business management skills, the time for military facilities' evolvement seems unavoidable. The Defense Installations Agency (DIA) has come to a conclusion that application of BIM is necessary. Since its decision, the DIA has been researching the use of BIM and developing guidelines for its application. Nevertheless, the speed of instructions and practical implementation of its model have been behind its plan due to various reasons. To overcome its limitations, the DIA has come up with three-step-solution: basic experience, budgeting, and expansion. Due to numerous number of projects of BIM, it is almost impractical to implement all of them concurrently. The methodological approach of the research employs the Delphi survey method to quantitatively analyze qualitative information drawn from experts' opinions. By applying the Delphi survey method, the first round of the survey drew lists of constraints, BIM application scenarios as well as BIM promotion measures. Afterwards, at the second round of the survey, criticality of each item collected at the 1st round was analyzed to reach a conclusion. Finally, constraints against BIM application were analyzed, and BIM application scenarios and promotion measures for the BIM were introduced.

Relationships between the Raman Excitation Photon Energies and Its Wavenumbers in Doped trans-Polyacetylene

  • Kim, Jin-Yeol;Kim, Eung-Ryul;Ihm, Dae-Woo;Tasumi, Mitsuo
    • Bulletin of the Korean Chemical Society
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    • v.23 no.10
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    • pp.1404-1408
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    • 2002
  • The resonance Raman spectra of trans-polyacetylene films doped heavily with electron donor (Na) and acceptor (HClO4) have been measured with excitation wavelengths between 488- and 1320-nm, and the relationships between the Raman excitation photon energies (2.54-0.94 eV) and its wavenumbers were discussed. We found the linear dependence of the Raman shifts with the exchanges of excitation photon energies. In particular, the Raman wavenumbers in the C=C stretching $(V_1$ band) showed a dramatic decrease with the increase in Raman excitation photon energies. In the case of acceptor doping, its change is larger than that of donor doping. The observed wavenumber (1255-1267 $cm^{-1}$) of the $V_2$ band (CC stretch) of Na-doped form is lower than that of the corresponding band (1290-1292 $cm^{-1}$) of its pristine trans-polyacetylene, whereas the contrary is the case for the HClO4 doped form (1295-1300 $cm^{-1}$). The origin of doping-induced Raman bands is discussed in terms of negative and positive polarons.

A Study on the Security Mechanism to Reduce Authentication Time in Wireless LAN(IEEE 802.11) (Wireless LAN(IEEE 802.11)에서 인증시간 단축을 위한 보안 메커니즘에 관한 연구)

  • Hong, Kyung-Sik;Seo, Jong-Soo;Ko, Kwang-Yong;Jung, Jun-Ha;Lee, Choul-Ki
    • The Journal of The Korea Institute of Intelligent Transport Systems
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    • v.8 no.6
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    • pp.112-120
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    • 2009
  • Both security enhancement in wireless and fast access for mobility are required to employ wireless LAN in ITS (Intelligent Transportation Systems). However, for the case of employing IEEE 802.11i security standard, it is known that the user authentication procedure of IEEE 802.1x and 4-way handshake procedure for stronger security enforcement may not be suitable for ITS due to its large delay. In this paper, we propose fast authentication method to resolve the above authentication delay problem, and verify its performance via simulation analysis.

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Byr4p, a Possible Regulator of Mitosis and Cytokinesis in Fission Yeast, Localizes to the Spindle Pole Body by its C-Terminal Domains

  • Jwa, Mi-Ri;Shin, Se-Jeong;Albright, Charles F.;Song, Ki-Won
    • BMB Reports
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    • v.32 no.1
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    • pp.92-97
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    • 1999
  • Cytokinesis and septation should be coordinated to nuclear division in the cell division cycle for precise transmission of the genome into daughter cells. byr4, an essential gene in fission yeast Schizosaccharomyces pombe, regulates the timing of cytokinesis and septation in a dosage-dependent manner. We examined the intracellular localization of the Byr4 protein by expressing byr4 as a fusion of green fluorescence protein (GFP). The Byr4 protein localizes as a single dot on the nuclear periphery of interphase cells, duplicates before mitosis, and the duplicated dots segregate with the nuclei in anaphase. The behavior of Byr4p throughout the cell cycle strongly suggests that Byr4p is localized to the spindle pole body (SPB), a microtubule organizing center (MTOC) in yeast. The presence of the Byr4 protein in the SPB is consistent with its function to coordinate mitosis and cytokinesis. We also mapped the domains of Byr4p for its proper localization to SPB by expressing various byr4 deletion mutants as GFP fusions. Analyses of the diverse byr4 deletion mutants suggest that the indirect repeats and the regions homologous to the open reading frame (ORF) YJR053W of S. cerevisiae in its C-terminus are essential for its localization to the SPB.

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Molecular Phylogeny of the Amynthas-complex (Oligochaeta: Megascolecidae) Inferred from ITS Nucleotide Sequences (Ribosomal DNA ITS 유전자를 이용한 왕지렁이(빈모강: 지렁이과) 그룹의 계통분류)

  • Hong, Yong;James, Samuel W.;Hwang, Ui-Wook;Lee, Bo-Eun;Park, Soon-Cheol;Kim, Tae-Heung
    • Korean Journal of Environmental Biology
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    • v.25 no.4
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    • pp.349-355
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    • 2007
  • Phylogeny of the species mainly from the genus Amynthas in family Megascolecidae was inferred at the molecular level using ITS regions in rDNA. With 26 species of earthworms from 10 genera in 2 families, a stretch comprising the 3'-end of the 18S rRNA, ITS1, 5.8S rRNA, ITS2, and 5' end of 28S rRNA was amplified by applying the primers ITS-1, ITS-2. Phylogenetic analyses of nucleotide sequences with a help of MP, NJ, and QP yielded 5 groups similarly. Genus Amynthas was separated largely into two groups, Korean and Philippine origins. Species grouped into the 1st were Amynthas jirensis, A. agrestis, A. gucheonensis, A. sopaikensis, A. bubonis, A. multimaculatus, A. koreanus, A. dageletensis, A. heteropodus, A. odaesanensis, Pontoscolex sp., Pheretima sp. 1, and Dendropheretima banahawensis. Amynthas halconensis, A. isarogensis, A. mindrooensis, Pithemera sp. 2, Pithmera sp. 1, and Pleionogaster sp. clustered into one clade forming the 2nd group. Polypheretima sp. 1 and polypheretima. sp. 2 stayed closely together representing a separate monophyletic status, forming the 3rd group, apart from species in other genera. Archipheretima sp. falls into the 4th group. Distinct morphological characteristics from Archipheretima also coinsides with its branching away from others in the previously reported molecular analyses. Similar to Perionyx excavatus that has been selected as an outgroup, Aporrectodea tuberculata also showed a long branch in the phylogram, but it differed from other 24 species included in the analyses. Unlike others, for example, its habitat is very closely related to that of man.

PCR Detection and Sequence Analysis of the rDNA ITS Regions of Rhizina undulata (Rhizina undulata rDNA ITS 영역의 PCR 검정 및 염기배열 분석)

  • Lee, Sun Keun;Lee, Jong Kyu;Kim, Kyung Hee;Lee, Seung Kyu;Lee, Sang Yong
    • Journal of Korean Society of Forest Science
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    • v.96 no.4
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    • pp.425-431
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    • 2007
  • To investigate genetic diversity and PCR detection of Rhizina undulata, PCR detection and sequence analysis of rDNA ITS region of R. undulata in soil were analyzed and developed. The length of partial 18S rDNA from four R. undulata isolates were 1,375 nt. The sequence similarity of R. undulata isolates was 100%. The rDNA ITS regions of R. undulata isolates were 585 nt long. Nucleotide sequencing of the ITS regions showed that PDK-1, PTT-1 and PDJ-9 isolates had 100% sequence identity. But, PDS-5 isolate differed from the three isolates by two nucleotide substitution. R. undulata-specific primers designed by the sequence of ITS region were used in PCR detection of R. undulata. PCR products about 525 bp size, which is specific to R. undulata, were amplified from total DNAs of R. undulata isolates. To assay the sensitivity of PCR detection by R. undulata ITS-specific primer, purely cultured mycelial suspension of R. undulata was serially diluted and mixed with 100g of sterile sandy loam soil, respectively. And then, PCR products of total DNAs extracted from each mycelium-soil mixtures were analysed. The PCR protocol could detected up to 1ng mycelium of R. undulata within 100g of soil.

A SERI technique reveals an immunosuppressive activity of a serine-rich protein encoded in Cotesia plutellae bracovirus

  • Barandoc, Karen P.;Park, Jay-Young;Kim, Yong-Gyun
    • BMB Reports
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    • v.43 no.4
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    • pp.279-283
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    • 2010
  • Polydnavirus genome is segmented and dispersed on host wasp chromosome. After replication, the segments form double- stranded circular DNAs and embedded in viral coat proteins. These viral particles are delivered into a parasitized host along with parasitoid eggs. A serine-rich protein (SRP) is predicted in a polydnavirus, Cotesia plutellae bracovirus (CpBV), genome in its segment no. 33 (CpBV-S33), creating CpBV-SRP1. This study explored its expression and physiological function in the diamondback moth, Plutella xylostella, larvae parasitized by C. plutellae. CpBV-SRP1 encodes 122 amino acids with 26 serines and several predicted phosphorylation sites. It is persistently expressed in all tested tissues of parasitized P. xylostella including hemocyte, fat body, and gut. Its physiological function was analyzed by injecting CpBV-S33 and inducing its expression in nonparasitized P. xylostella by a technique called SERI (segment expression and RNA interference). The expression of CpBV-SRP1 significantly impaired the spreading behavior and total cell count of hemocytes of treated larvae. Subsequent RNA interference of CpBV-SRP1 rescued the immunosuppressive response. This study reports the persistent expression of CpBV-SRP1 in a parasitized host and its parasitic role in suppressing the host immune response by altering hemocyte behavior and survival.

The change of rotational freedom following different insertion torques in three implant systems with implant driver

  • Kwon, Joo-Hyun;Han, Chong-Hyun;Kim, Sun-Jai;Chang, Jae-Seung
    • The Journal of Advanced Prosthodontics
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    • v.1 no.1
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    • pp.37-40
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    • 2009
  • STATEMENT OF PROBLEM. Implant drivers are getting popular in clinical dentistry. Unlike to implant systems with external hex connection, implant drivers directly engage the implant/abutment interface. The deformation of the implant/abutment interface can be introduced while placing an implant with its implant driver in clinical situations. PURPOSE. This study evaluated the change of rotational freedom between an implant and its abutment after application of different insertion torques. MATERIAL AND METHODS. Three kinds of internal connection implants were utilized for the current study($4.5{\times}12\;mm$ Xive, $4.3{\times}11.5\;mm$ Inplant Magicgrip, $4.3{\times}12\;mm$ Implantium MF). An EstheticBase, a 2-piece top, a Dual abutment was used for its corresponding implant system. The rotational freedom between an implant and its abutment were measured before and after applying 45, 100 Ncm insertion torque. Repeated measures ANOVA was used for statistical analysis. RESULTS. Under 45 Ncm insertion torque, the rotational freedom between an implant and its abutment was significantly increased in Xive(P = .003). However, no significant change was noted in Inplant Magicgrip and Implantium MF. Under 100 Ncm torque, both in Xive(P = .0005) and Implatium MF(P = .03) resulted in significantly increased rotational freedom between the implant and its abutment. DISCUSSION. The design of the implant/implant driver interface effectively prevented the deformation of implant/abutment interface. Little change was noted in the rotational freedom between an implant and its abutment, even though the insertion torque was far beyond clinical application. CONCLUSIONS. The implant/abutment joint of internally connecting implants were quite stable under insertion torque in clinical situation.