• Title/Summary/Keyword: ITS and lsu rDNA

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Two Species of Endophytic Penicillium from Pinus rigida in Korea

  • Kim, Chang-Sun;Park, Myung-Soo;Yu, Seung-Hun
    • Mycobiology
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    • v.36 no.4
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    • pp.222-227
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    • 2008
  • Upon studying the diversity of fungal endophytes associated with pine trees in Korea, many species of Penicillium were encountered. In this study, we report two species of Penicillium isolated from the needles of Pinus rigida. Based on ID region analysis, cultural and morphological characteristics, the two species were identified as Penicillium fellutanum and P. toxicarium, both of which are new to Korea.

Root Age-Dependent Changes in Arbuscular Mycorrhizal Fungal Communities Colonizing Roots of Panax ginseng

  • Kil, Yi-Jong;Eo, Ju-Kyeong;Lee, Eun-Hwa;Eom, Ahn-Heum
    • Mycobiology
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    • v.42 no.4
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    • pp.416-421
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    • 2014
  • In this study, we examined arbuscular mycorrhizal fungal (AMF) community structure colonizing field-cultivated ginseng roots according of different ages, such as 1- to 5-year-old plant, collected from Geumsan-gun, Korea. A total of seven AMF species namely, Funnelliformis caledonium, F. moseae, Gigaspora margarita, Paraglomus laccatum, P. occultum, Rhizophagus irregularis, and Scutellospora heterogama were identified from the roots using cloning, PCR-restriction fragment length polymorphism and sequence analysis of the large subunit region in rDNA. AMF species diversity in the ginseng roots decreased with the increase in root age because of the decreased species evenness. In addition, the community structures of AMF in the roots became more uniform. These results suggest that the age of ginseng affects mycorrhizal colonization and its community structure.

Identification of Podosphaera xanthii as the causal agent of powdery mildew disease affecting Echinacea purpurea in Korea (에키나시아 흰가루병을 일으키는 Podosphaera xanthii 동정)

  • Choi, In-Young;Hong, Sun-Hee;Lee, Yong-Ho;Shin, Hyeon-Dong
    • The Korean Journal of Mycology
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    • v.48 no.3
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    • pp.337-343
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    • 2020
  • During the extensive forays for discovering the biodiversity of phytopathogenic fungi in Korea, powdery mildew-affected purple coneflowers (Echinacea purpurea) were frequently found. Since 2004, nine samples have been deposited in the Korea University Herbarium. The initial symptoms include white, evanescent mycelia and irregular patches on mature leaves. Mild symptoms in the form of discolored lesions are also noticed on the stem and petal of the affected plants. Based on the morphological characteristics of the anamorph and the phylogenetic analysis of the internal transcribed spacers (ITS) and large subunit (LSU) rDNA sequences, the causal fungus was identified as Podosphaera xanthii. This is the first report that identifies the causal agent of powdery mildew disease affecting purple coneflower in Korea.

Two Unreported Species of Endophytic Fungi Isolated from Leaves of Abies koreana in Korea (구상나무의 잎에서 분리한 두 종의 국내 미기록 내생균)

  • Park, Hyeok;Kim, Dong-Yeo;Eom, Ahn-Heum
    • The Korean Journal of Mycology
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    • v.46 no.1
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    • pp.22-27
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    • 2018
  • We isolated endophytic fungal strains from the leaves of Abies koreana growing in Korea. The fungal strains were identified as Coleophoma parafusiformis and Coniochaeta ligniaria, based on morphological characteristics and sequence analysis of the internal transcribed spacer region and large subunit region of ribosomal DNA. These species have not been previously reported in Korea. In this study, we report the morphological characteristics and results of phylogenetic analysis of the two novel fungal strains.

Unrecorded Fungi Isolated from Rhizosphere Soil of Fallopia sachalinensis in Dokdo Islands (독도 왕호장근 근권 토양에서 분리된 미기록 균류)

  • Young-Hyun You;Han Jung Sung;Manh Ha Nguyen;Jong Myong Park;Ji Won Hong;Won-Jae Chi;Kim Bomi;Dae Ho Kim
    • The Korean Journal of Mycology
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    • v.51 no.3
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    • pp.251-257
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    • 2023
  • We isolated fungi from the rhizosphere of Fallopia sachalinensis in Dokdo islands. Morphological and molecular characters, based on the internal transcribed spacer (ITS), and partial large subunit (LSU) or partial beta-tubulin genes, were used to identify the isolated fungi. The results revealed the fungi isolated from the Fallopia rhizosphere to be Penicillium striatisporum and Gongronella sichuanensis. Given that these species have never previously been recorded in Korea, we have described the morphological and molecular characteristics of these fungi in this study.

Pucciniastrum hydrangeae-petiolaris, a Newly Found Rust Fungus on Hydrangea petiolaris in Korea (국내 미기록 등수국 녹병균 Pucciniastrum hydrangeae-petiolaris)

  • Lee, Jae Sung;Choi, Young-Joon;Choi, Byoung-Ki;Jung, Bok-Nam;Park, Ji-Hyun;Shin, Hyeon-Dong
    • The Korean Journal of Mycology
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    • v.49 no.1
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    • pp.119-125
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    • 2021
  • Hydrangea petiolaris, belonging to the family Hydrangeaceae, is a vine plant distributed in Ulleung, Jeju, and other southern islands of Korea. In October 2017, a rust fungus was discovered on H. petiolaris in Jeju Island, Korea. To identify the rust fungus, we performed a morphological examination and molecular phylogenetic analysis of the internal transcribed spacer and 28S large subunit rDNA sequences. As a result, the fungus was identified as Pucciniastrum hydrangeae-petiolaris, consistent with previous reports from Japan and Russia, but showed a significant phylogenetic distance from Pucciniastrum hydrangeae reported on Hydrangeae spp. in North America. This is the first record of P. hydrangeae-petiolaris on H. petiolaris in Korea.

Rust Fungus Pucciniastrum styracinum on Styrax japonicus in Korea Confirmed by Morphological and Molecular Data (형태 및 분자적 특징에 의한 때죽나무 녹병균(Pucciniastrum styracinum)의 재확인)

  • Park, Ji-Hyun;Jung, Bok-Nam;Lee, Jae Sung;Choi, Young-Joon;Shin, Hyeon-Dong
    • The Korean Journal of Mycology
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    • v.49 no.4
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    • pp.531-537
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    • 2021
  • Styrax japonicus is a deciduous shrub or a small tree belonging to the family Styracaceae. Since 1990, a rust fungus has continuously been found on S. japonicus leaves across the country. The morphological characteristics of the rust fungus were most consistent with those of Pucciniastrum styracinum reported on Styrax obassia in Japan. The species identification was confirmed by molecular phylogenetic analysis of the internal transcribed spacer and large subunit rDNA sequences. The current study provides mycological information with morphological measurements and molecular phylogenetic data of P. styracinum found on S. japonicus in Korea. Therefore, this is the first confirmed report on the presence of P. styracinum on S. japonicus in Korea.

Identification of Puccinia iridis on Iris domestica in Korea (범부채에서 녹병균 Puccinia iridis의 동정)

  • Choi, In-Young;Choi, Young-Joon;Kim, Jin-Young;Shin, Hyeon-Dong
    • The Korean Journal of Mycology
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    • v.47 no.1
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    • pp.89-94
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    • 2019
  • A rust fungus on Iris domestica (syn. Belamcanda chinensis) from China was previously identified as Puccinia iridis. Accordingly, the identity of the rust fungus on the same host species in Korea needs to be reexamned. Morphological characteristics of the Korean materials matched with P. iridis. Molecular phylogenetic analyses based on internal transcribed spacer and large subunit rDNA sequences of two representative materials confirmed the identification by high sequence similarities of 100% and 99% with the reference sequences available in NCBI GenBank database. Phylogenetic tree inferred from neighbor-joining method proved them to be clustered in P. iridis group. Thus, the rust fungus on I. domestica in Korea was determined as P. iridis. On the other hand, a previous record that Puccinia belamcandae is another rust agent on I. domestica in Korea should be reconfirmed in future.

Molecular Phylogeny of Chattonella (Raphidophyceae) Species from Deungnyang Bay, Korea Using Single-Cell PCR (Single-cell PCR을 이용하여 분석한 득량만 Chattonella 종 (Raphidophyceae)의 분자계통학적 특성)

  • Kim, Jin Joo;Song, Seon Yeung;Park, Tae Gyu
    • Journal of the Korean Society of Marine Environment & Safety
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    • v.24 no.7
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    • pp.967-972
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    • 2018
  • The genus Chattonella belonging to the class raphidophyceae, is a harmful algal bloom species. Recently, its occurrence has been increasing and expanding along the Korean coast. Species identification of the genus Chattonella only by morphological observation is difficult due to the lack of rigid cell walls. In this study, the morphological characteristics and genetic affinity of Chattonella sp. isolated from Deungnyang Bay in 2017 were examined. We carried out single-cell isolation from field samples then sequenced three different areas using the single-cell PCR method: 1) parts of ribosomal operon, the large subunit (LSU) of the rDNA, 2) the chloroplast-encoded subunit psaA of Photosystem I, and 3) rbcL encoding the large subunit of the Rubisco gene. The cells were morphologically very similar to the general genus Chattonella ($74.0{\pm}10.1{\mu}m$ in length, $33.1{\pm}3.6{\mu}m$ in width). The three partial gene sequences were insufficient to justify distinction at the species rank. However, they clustered at 99-100 % sequence similarity with C. marina, C. marina var. antiqua and C. marina var. ovata.

A New Report of Biscogniauxia petrensis Isolated from Mosquitoes in Korea

  • Das, Kallol;Kim, Joung-Ho;Choi, Kwang-Shik;Lee, Seung-Yeol;Jung, Hee-Young
    • The Korean Journal of Mycology
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    • v.48 no.2
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    • pp.87-93
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    • 2020
  • A fungal strain designated KNU-WDM2A2 was isolated from mosquitoes in Gimcheon, Korea. The pure culture was transferred to potato dextrose agar (PDA) and synthetic nutrient agar (SNA) media and attained a diameter of 90 mm after 10 days of incubation at 25℃. The colonies were whitish to light pink and cottony to wooly, with an abundant production of aerial mycelia. The strain produced hyaline to slightly yellowish conidiophores that were rough-walled and branched, with conidiogenous cells arising terminally or laterally. Conidia were unicellular, hyaline to light brown, smooth, and oval or ovoid to clavate, with a size of 4.1-6.9×2.5-3.3 ㎛ (n=65). A phylogenetic analysis was conducted using the internal transcribed spacer (ITS) regions and 28S rDNA of large subunit (LSU) sequences, to support the cultural and morphological characteristics. The KNU-WDM2A2 strain was identified here as Biscogniauxia petrensis, new to Korea.