• Title/Summary/Keyword: Hybrid segment

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Utility of Selected Non-coding Chloroplast DNA Sequences for Lineage Assessment of Musa Interspecific Hybrids

  • Swangpol, Sasivimon;Volkaert, Hugo;Sotto, Rachel C.;Seelanan, Tosak
    • BMB Reports
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    • v.40 no.4
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    • pp.577-587
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    • 2007
  • Single-copy chloroplast loci are used widely to infer phylogenetic relationship at different taxonomic levels among various groups of plants. To test the utility of chloroplast loci and to provide additional data applicable to hybrid evolution in Musa, we sequenced two introns, rpl16 and ndhA, and two intergenic spacers, psaA-ycf3 and petA-psbJ-psbL-psbF and combined these data. Using these four regions, Musa acuminata Cola(A)- and M. balbisiana Colla (B)-containing genomes were clearly distinguished. Some triploid interspecific hybrids contain A-type chloroplasts (the AAB/ABB) while others contain B-type chloroplasts (the BBA/BBB). The chloroplasts of all cultivars in 'Namwa' (BBA) group came from the same wild maternal origin, but the specific parents are still unrevealed. Though, average sequence divergences in each region were little (less than 2%), we propose that petA-psbJ intergenic spacer could be developed for diversity assessment within each genome. This segment contains three single nucleotide polymorphisms (SNPs) and two indels which could distinguish diversity within A genome whereas this same region also contains one SNP and an indel which could categorize B genome. However, an inverted repeat region which could form hairpin structure was detected in this spacer and thus was omitted from the analyses due to their incongruence to other regions. Until thoroughly identified in other members of Musaceae and Zingiberales clade, utility of this inverted repeat as phylogenetic marker in these taxa are cautioned.

A Comparison of Anterior Cervical Discectomy and Fusion versus Fusion Combined with Artificial Disc Replacement for Treating 3-Level Cervical Spondylotic Disease

  • Jang, Seo-Ryang;Lee, Sang-Bok;Cho, Kyoung-Suok
    • Journal of Korean Neurosurgical Society
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    • v.60 no.6
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    • pp.676-683
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    • 2017
  • Objective : The purpose of this study is to evaluate the efficacy and safety of 3-level hybrid surgery (HS), which combines fusion and cervical disc replacement (CDR), compared to 3-level fusionin patient with cervical spondylosis involving 3 levels. Methods : Patients in the anterior cervical discectomy and fusion (ACDF) group (n=30) underwent 3-level fusion and the HS group (n=19) underwent combined surgery with fusion and CDR. Clinical outcomes were evaluated using the visual analogue scale for the arm, the neck disability index (NDI), Odom criteria and postoperative complications. The cervical range of motion (ROM), fusion rate and adjacent segments degeneration were assessed with radiographs. Results : Significant improvements in arm pain relief and functional outcome were observed in ACDF and HS group. The NDI in the HS group showed better improvement 6 months after surgery than that of the ACDF group. The ACDF group had a lower fusion rate, higher incidence of device related complications and radiological changes in adjacent segments compared with the HS group. The better recovery of cervical ROM was observed in HS group. However, that of the ACDF group was significantly decreased and did not recover. Conclusion : The HS group was better than the ACDF group in terms of NDI, cervical ROM, fusion rate, incidence of postoperative complications and adjacent segment degeneration.

Vehicle Information Recognition and Electronic Toll Collection System with Detection of Vehicle feature Information in the Rear-Side of Vehicle (차량후면부 차량특징정보 검출을 통한 차량정보인식 및 자동과금시스템)

  • 이응주
    • Journal of Korea Multimedia Society
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    • v.7 no.1
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    • pp.35-43
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    • 2004
  • In this paper, we proposed a vehicle recognition and electronic toll collection system with detection and classification of vehicle identification mark and emblem as well as recognition of vehicle license plate to unman toll fee collection system or incoming/outcoming vehicles to an institution. In the proposed algorithm, we first process pre-processing step such as noise reduction and thinning from the rear side input image of vehicle and detect vehicle mark, emblem and license plate region using intensity variation informations, template masking and labeling operation. And then, we classify the detected vehicle features regions into vehicle mark and emblem as well as recognize characters and numbers of vehicle license plate using hybrid and seven segment pattern vector. To show the efficiency of the proposed algorithm, we tested it on real vehicle images of implemented vehicle recognition system in highway toll gate and found that the proposed method shows good feature detection/classification performance regardless of irregular environment conditions as well as noise, size, and location of vehicles. And also, the proposed algorithm may be utilized for catching criminal vehicles, unmanned toll collection system, and unmanned checking incoming/outcoming vehicles to an institution.

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Unrecorded fern species from Korean flora: Nephrolepis cordifolia (Nephrolepidaceae), Athyrium epirachis (Athyriaceae) and Asplenium castaneo-viride (Aspleniaceae) (한국산 미기록 양치식물: 줄고사리 (줄고사리과), 산중개고사리 (개고사리과), 거미꼬리고사리 (꼬리고사리과))

  • Kim, Chul Hwan;Moon, Myung Ok;Kang, Young-Je;Kim, Chan Soo;Ahn, Jin Kap;Sun, Byung-Yun
    • Korean Journal of Plant Taxonomy
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    • v.35 no.4
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    • pp.287-294
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    • 2005
  • Three unrecorded fern species from the flora of Korea, Nephrolepis cordifolia, Athyrium epirhachis, and Asplenium castaneo-viride, are reported here. Nephrolepis cordifolia, recognized as introduced species and cultivation in Korea until now, is found in the wild at the entrance of small cave in Jeju island. Athyrium epirhachis is found under the Quercus acuta forest at about 400 - 500 m alt. in Jeju island. This species is similar to A. otophorum but different from the latter by having once pinnately divided leaf blade and the decurrent base of ultimate segment. Asplenium castaneo-viride is hybrid between A. ruprechtii and A. incisum and is distinguished from parental species by presence of proliferation, shape of leaf blade, pattern of venation, and leaf texture.

The Shot Change Detection Using a Hybrid Clustering (하이브리드 클러스터링을 이용한 샷 전환 검출)

  • Lee, Ji-Hyun;Kang, Oh-Hyung;Na, Do-Won;Lee, Yang-Won
    • Proceedings of the Korean Institute of Information and Commucation Sciences Conference
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    • v.9 no.2
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    • pp.635-638
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    • 2005
  • The purpose of video segmentation is to segment video sequence into shots where each shot represents a sequence of frames having the same contents, and then select key frames from each shot for indexing. There are two types of shot changes, abrupt and gradual. The major problem of shot change detection lies on the difficulty of specifying the correct threshold, which determines the performance of shot change detection. As to the clustering approach, the right number of clusters is hard to be found. Different clustering may lead to completely different results. In this thesis, we propose a video segmentation method using a color-X$^2$ intensity histogram-based fuzzy c-means clustering algorithm.

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Arrhythmia Classification using GAN-based Over-Sampling Method and Combination Model of CNN-BLSTM (GAN 오버샘플링 기법과 CNN-BLSTM 결합 모델을 이용한 부정맥 분류)

  • Cho, Ik-Sung;Kwon, Hyeog-Soong
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.26 no.10
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    • pp.1490-1499
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    • 2022
  • Arrhythmia is a condition in which the heart has an irregular rhythm or abnormal heart rate, early diagnosis and management is very important because it can cause stroke, cardiac arrest, or even death. In this paper, we propose arrhythmia classification using hybrid combination model of CNN-BLSTM. For this purpose, the QRS features are detected from noise removed signal through pre-processing and a single bit segment was extracted. In this case, the GAN oversampling technique is applied to solve the data imbalance problem. It consisted of CNN layers to extract the patterns of the arrhythmia precisely, used them as the input of the BLSTM. The weights were learned through deep learning and the learning model was evaluated by the validation data. To evaluate the performance of the proposed method, classification accuracy, precision, recall, and F1-score were compared by using the MIT-BIH arrhythmia database. The achieved scores indicate 99.30%, 98.70%, 97.50%, 98.06% in terms of the accuracy, precision, recall, F1 score, respectively.

The Variation of Natural Population of Pinus densiflora S. et Z. in Korea(II) -Characteristics of Needle and Wood of Myong-Ju, Ul-Jin, and Suweon Populations- (소나무천연집단(天然集團)의 변이(變異)에 관(關)한 연구(硏究)(II) -명주(溟州), 울진(蔚珍), 수원집단(水原集團)의 침엽(針葉) 및 재질형질(材質形質)-)

  • Yim, Kyong Bin;Kwon, Ki Won
    • Journal of Korean Society of Forest Science
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    • v.31 no.1
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    • pp.8-20
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    • 1976
  • For study on the variation of natural stand, three populations of Pinus densiflora S. et Z. were selected at samsanri Yongogmyun Myongjugun Kangwondo (4), Hawonri seomyun Uljingun Kyongbuk (5), and Emogdong Suweon Kyongkido (6) successibely after the selection of three population in 1974. Twenty individual trees were chosen from each population and the morphological characteristics of trees, needle and wood properties were investigated on the trees. The results are summerized as follows; 1. Serration density, resin canal number in needle did not show significant differences, however stomata row number in the both sides of needle showed highly significant differences among 3 populations. But significant differences were calculated among individual trees in a population regarding any character of needles. 2. Ail population had high correlation on the stomata row between abaxial and adaxial side of needle. 3. The Myongjungun population showed the highest value of resin duct index, which means the population had the highest degree of hybrid character. 4. The ring segment width and summerwood percentage in the wood properties had significant differences, and yet specific gravity and tracheid length had not significant differences statistically among 3 populations. But all the values were significant statistically among the ring segments within population. 5. The ring segment width decreased rapidly with increasing tree age but summerwood percentage, specific gravity, tracheid length increased slowly to the middle age of tree and then decreased slowly after the age. But the patterns of decrease or increase were some different by population. 6. The values of Uljingun population were generally high in the coefficient of variation on all the needle characters. And the values of Suweon population were always the highest and those of Myongjugun population the lowest in the coefficient of variation on all the wood properties.

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Plant Regeneration from Cell Suspension Culture Using Leaf Callus in Actinidia deliciosa X A. arguta Clone 118 (양다래X다래 클론 118의 엽조직 캘러스를 이용한 세포 현탁배양으로부터 식물체 유도)

  • Kim Yong-Wook;Moon Heung-Kyu
    • Journal of Plant Biotechnology
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    • v.32 no.4
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    • pp.287-292
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    • 2005
  • Calli were induced by culturing the leaf segment of Actinidia deliciosa ${\times}$ A. arguta clone 118 on MS medium supplemented with 0.5 mg/L 2,4-D, 0.1 mg/L NAA and 0.05 mg/L BA for 8 weeks in light condition. The induced calli were inoculated in liquid MS medium containing 0.5 mg/L 2,4-D, 0.1 mg/L NAA, 0.05 mg/L BA and 3% sucrose to establish cell suspension culture. The cells at the exponential stage and the stationary stage could be observed between 5-11 days and after that 12 days in culture, respectively. The fresh weight of callus induced from the suspended cells did not vary much among the media containing eight different combinations of plant growth regulators tested. The highest frequency of shoot induction (88.3%) was observed in MS medium containing 2.0 mg/L zeatin. Either BA or zeatin mixed with thidiazuron (TDZ) seemed to be effective in shoot induction. The induced shoots were transferred to MS medium containing 0.2 mg/L zeatin for further shoot growth. And then the shoots were transferred to Standardi (ST) medium containing 1.0 mg/L indolebutyric acid (IBA) for rooting. Plantlets could be obtained through cell suspension culture of Actinidia deliciosa ${\times}$ A. arguta clone 118.

Adaptive Vehicle License Plate Recognition System Using Projected Plane Convolution and Decision Tree Classifier (투영면 컨벌루션과 결정트리를 이용한 상태 적응적 차량번호판 인식 시스템)

  • Lee Eung-Joo;Lee Su Hyun;Kim Sung-Jin
    • Journal of Korea Multimedia Society
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    • v.8 no.11
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    • pp.1496-1509
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    • 2005
  • In this paper, an adaptive license plate recognition system which detects and recognizes license plate at real-time by using projected plane convolution and Decision Tree Classifier is proposed. And it was tested in circumstances which presence of complex background. Generally, in expressway tollgate or gateway of parking lots, it is very difficult to detect and segment license plate because of size, entry angle and noisy problem of vehicles due to CCD camera and road environment. In the proposed algorithm, we suggested to extract license plate candidate region after going through image acquisition process with inputted real-time image, and then to compensate license size as well as gradient of vehicle with change of vehicle entry position. The proposed algorithm can exactly detect license plate using accumulated edge, projected convolution and chain code labeling method. And it also segments letter of license plate using adaptive binary method. And then, it recognizes license plate letter by applying hybrid pattern vector method. Experimental results show that the proposed algorithm can recognize the front and rear direction license plate at real-time in the presence of complex background environments. Accordingly license plate detection rate displayed $98.8\%$ and $96.5\%$ successive rate respectively. And also, from the segmented letters, it shows $97.3\%$ and $96\%$ successive recognition rate respectively.

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Biomechanical Analysis of a Combined Interspinous Spacer with a Posterior Lumbar Fusion with Pedicle Screws (척추경나사못을 이용한 유합술과 동반 시술된 극돌기간 삽입기구의 생체역학적 연구)

  • Kim, Y.H.;Park, E.Y.;Lee, S.J.
    • Journal of Biomedical Engineering Research
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    • v.36 no.6
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    • pp.276-282
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    • 2015
  • Recently, during the multi-level fusion with pedicle screws, interspinous spacer are sometimes substituted for the most superior level of the fusion in an attempt to reduce the number of fusion level and likelihood of degeneration process at the adjacent level. In this study, a finite element (FE) study was performed to assess biomechanical efficacies of the interspinous spacer combined with posterior lumbar fusion with a previously-validated 3-dimensional FE model of the intact lumbar spine (L1-S1). The post-operative models were made by modifying the intact model to simulate the implantation of interspinous spacer and pedicle screws at the L3-4 and L4-5. Four different configurations of the post-op model were considered: (1) a normal spinal model; (2) Type 1, one-level fusion using posterior pedicle screws at the L4-5; (3) Type 2, two-level (L3-5) fusion; (4) Type 3, Type 1 plus Coflex$^{TM}$ at the L3-4. hybrid protocol (intact: 10 Nm) with a compressive follower load of 400N were used to flex, extend, axially rotate and laterally bend the FE model. As compared to the intact model, Type 2 showed the greatest increase in Range of motion (ROM) at the adjacent level (L2-3), followed Type 3, and Type 1 depending on the loading type. At L3-4, ROM of Type 2 was reduced by 34~56% regardless of loading mode, as compared to decrease of 55% in Type 3 only in extension. In case of normal bone strength model (Type 3_Normal), PVMS at the process and the pedicle remained less than 20% of their yield strengths regardless of loading, except in extension (about 35%). However, for the osteoporotic model (Type 3_Osteoporotic), it reached up to 56% in extension indicating increased susceptibility to fracture. This study suggested that substitution of the superior level fusion with the interspinous spacer in multi-level fusion may be able to offer similar biomechanical outcome and stability while reducing likelihood of adjacent level degeneration.