• Proceedings of the KSRS Conference
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• 2007.10a
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• pp.438-441
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• 2007

Recently, due to molecular biology and engineering technology, DNA microarray makes people watch thousands of genes and the state of variation from the tissue samples of living body. With DNA Microarray, it is possible to construct a genetic group that has similar expression patterns and grasp the progress and variation of gene. This paper practices Cluster Analysis which purposes the discovery of biological subgroup or class by using gene expression information. Hence, the purpose of this paper is to predict a new class which is unknown, open leukaemia data are used for the experiment, and MCL (Markov CLustering) algorithm is applied as an analysis method. The MCL algorithm is based on probability and graph flow theory. MCL simulates random walks on a graph using Markov matrices to determine the transition probabilities among nodes of the graph. If you look at closely to the method, first, MCL algorithm should be applied after getting the distance by using Euclidean distance, then inflation and diagonal factors which are tuning modulus should be tuned, and finally the threshold using the average of each column should be gotten to distinguish one class from another class. Our method has improved the accuracy through using the threshold, namely the average of each column. Our experimental result shows about 70% of accuracy in average compared to the class that is known before. Also, for the comparison evaluation to other algorithm, the proposed method compared to and analyzed SOM (Self-Organizing Map) clustering algorithm which is divided into neural network and hierarchical clustering. The method shows the better result when compared to hierarchical clustering. In further study, it should be studied whether there will be a similar result when the parameter of inflation gotten from our experiment is applied to other gene expression data. We are also trying to make a systematic method to improve the accuracy by regulating the factors mentioned above.

• Proceedings of the KSRS Conference
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• 2008.10a
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• pp.111-114
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• 2008

The existence of noise bands may deform the typical shape of the spectrum, making the accuracy of clustering degraded. This paper proposes a statistical approach to remove noise bands in hyperspectral data using the correlation coefficient of bands as an indicator. Considering each band as a random variable, two adjacent signal bands in hyperspectral data are highly correlative. On the contrary, existence of a noise band will produce a low correlation. For clustering, the unsupervised ${\kappa}$-nearest neighbor clustering method is implemented in accordance with three well-accepted spectral matching measures, namely ED, SAM and SID. Furthermore, this paper proposes a hierarchical scheme of combining those measures. Finally, a separability assessment based on the between-class and the within-class scatter matrices is followed to evaluate the applicability of the proposed noise band removal method. Also, the paper brings out a comparison for spectral matching measures.

• KSII Transactions on Internet and Information Systems (TIIS)
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• v.4 no.3
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• pp.224-242
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• 2010

Data routing in wireless sensor networks must be energy-efficient because tiny sensor nodes have limited power. A cluster-based hierarchical routing is known to be more efficient than a flat routing because only cluster-heads communicate with a sink node. Existing hierarchical routings, however, assume unrealistically large radio transmission ranges for sensor nodes so they cannot be employed in real environments. In this paper, by considering the practical transmission ranges of the sensor nodes, we propose a clustering and routing method for hierarchical sensor networks: First, we provide the optimal ratio of cluster-heads for the clustering. Second, we propose a d-hop clustering scheme. It expands the range of clusters to d-hops calculated by the ratio of cluster-heads. Third, we present an intra-cluster routing in which sensor nodes reach their cluster-heads within d-hops. Finally, an inter-clustering routing is presented to route data from cluster-heads to a sink node using multiple hops because cluster-heads cannot communicate with a sink node directly. The efficiency of the proposed clustering and routing method is validated through extensive simulations.

• Journal of the Korean Institute of Intelligent Systems
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• v.13 no.5
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• pp.512-519
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• 2003

In this paper, we propose a neuro-fuzzy modeling to improve the performance using the hierarchical clustering and Gaussian Mixture Model(GMM). The hierarchical clustering algorithm has a property of producing unique parameters for the given data because it does not use the object function to perform the clustering. After optimizing the obtained parameters using the GMM, we apply them as initial parameters for Adaptive Network-based Fuzzy Inference System. Here, the number of fuzzy rules becomes to the cluster numbers. From this, we can improve the performance index and reduce the number of rules simultaneously. The proposed method is verified by applying to a neuro-fuzzy modeling for Box-Jenkins s gas furnace data and Sugeno's nonlinear system, which yields better results than previous oiles.

• Korean Journal of Remote Sensing
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• v.20 no.3
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• pp.215-225
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• 2004

A multistage hierarchical clustering technique, which is an unsupervised technique, was suggested in this paper for classifying large remotely-sensed imagery. The multistage algorithm consists of two stages. The 'local' segmentor of the first stage performs region-growing segmentation by employing the hierarchical clustering procedure of CN-chain with the restriction that pixels in a cluster must be spatially contiguous. The 'global' segmentor of the second stage, which has not spatial constraints for merging, clusters the segments resulting from the previous stage, using the conventional agglomerative approach. Using simulation data, the proposed method was compared with another hierarchical clustering technique based on 'mutual closest neighbor.' The experimental results show that the new approach proposed in this study considerably increases in computational efficiency for larger images with a low number of bands. The technique was then applied to classify the land-cover types using the remotely-sensed data acquired from the Korean peninsula.

• Journal of the Korean Society for Library and Information Science
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• v.38 no.4
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• pp.179-192
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• 2004

In this paper, we present that the result of document clustering can change dramatically with respect to the different ways of indexing compound nouns. First of all, the automatic indexing engine specialized for Korean words analysis, which also serves as the backbone engine for automatic document clustering system, is introduced. Then, the details of hierarchical agglomerative clustering(HAC) method, one of the widely used clustering methodologies in these days, was illustrated. As the result of observing the experiments, carried out in the final part of this paper, it comes to the conclusion that the various modes of indexing compound nouns have an effect on the outcome of HAC.

• Journal of the Institute of Electronics Engineers of Korea SD
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• v.45 no.2
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• pp.150-156
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• 2008

Many papers have shown that the hierarchical clustering method takes good-performance, but is limited because of its quadratic time complexity. In contrast, with a large number of variables, K-means reduces a time complexity. Think of the factor of simplify, high-quality and high-efficiency, we combine the two approaches providing a new system named CONDOR system with hierarchical structure based on document clustering using K-means algorithm. Evaluated the performance on different hierarchy depth and initial uncertain centroid number based on variational relative document amount correspond to given queries. Comparing with regular method that the initial centroids have been established in advance, our method performance has been improved a lot.

• Journal of the Korean Institute of Intelligent Systems
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• v.20 no.5
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• pp.716-721
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• 2010

In this work we address the use of support vector machine (SVM) in the multi-class gas classification system. The objective is to classify single gases and their mixture with a semiconductor-type electronic nose. The SVM has some typical multi-class classification models; One vs. One (OVO) and One vs. All (OVA). However, studies on those models show weaknesses on calculation time, decision time and the reject region. We propose a hierarchical clustering method (HCM) based on the SVM for real-time gas mixture classification. Experimental results show that the proposed method has better performance than the typical multi-class systems based on the SVM, and that the proposed method can classify single gases and their mixture easily and fast in the embedded system compared with BP-MLP and Fuzzy ARTMAP.

• Journal of Microbiology and Biotechnology
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• v.16 no.5
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• pp.748-756
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• 2006

We propose a genome-scale clustering approach to identify whole genome relationships using the functional groups given by the Kyoto Encyclopedia of Genes and Genomes Orthology (KO) database. The metabolic capabilities of each organism were defined by the number of genes in each functional category. The archaeal, bacterial, and eukaryotic genomes were compared by simultaneously applying a two-step clustering method, comprised of a self-organizing tree algorithm followed by unsupervised hierarchical clustering. The clustering results were consistent with various phenotypic characteristics of the organisms analyzed and, additionally, showed a different aspect of the relationship between genomes that have previously been established through rRNA-based comparisons. The proposed approach to collect and cluster the metabolic functional capabilities of organisms should make it a useful tool in predicting relationships among organisms.

• Communications for Statistical Applications and Methods
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• v.25 no.3
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• pp.263-274
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• 2018

One of the common issues in large dataset analyses is to detect and construct homogeneous groups of objects in those datasets. This is typically done by some form of clustering technique. In this study, we present a divisive hierarchical clustering method for two monothetic characteristics of histogram data. Unlike classical data points, a histogram has internal variation of itself as well as location information. However, to find the optimal bipartition, existing divisive monothetic clustering methods for histogram data consider only location information as a monothetic characteristic and they cannot distinguish histograms with the same location but different internal variations. Thus, a divisive clustering method considering both location and internal variation of histograms is proposed in this study. The method has an advantage in interpreting clustering outcomes by providing binary questions for each split. The proposed clustering method is verified through a simulation study and applied to a large U.S. house property value dataset.