• Title/Summary/Keyword: Graph Clustering

Search Result 133, Processing Time 0.032 seconds

CLUSTERING DNA MICROARRAY DATA BY STOCHASTIC ALGORITHM

  • Shon, Ho-Sun;Kim, Sun-Shin;Wang, Ling;Ryu, Keun-Ho
    • Proceedings of the KSRS Conference
    • /
    • 2007.10a
    • /
    • pp.438-441
    • /
    • 2007
  • Recently, due to molecular biology and engineering technology, DNA microarray makes people watch thousands of genes and the state of variation from the tissue samples of living body. With DNA Microarray, it is possible to construct a genetic group that has similar expression patterns and grasp the progress and variation of gene. This paper practices Cluster Analysis which purposes the discovery of biological subgroup or class by using gene expression information. Hence, the purpose of this paper is to predict a new class which is unknown, open leukaemia data are used for the experiment, and MCL (Markov CLustering) algorithm is applied as an analysis method. The MCL algorithm is based on probability and graph flow theory. MCL simulates random walks on a graph using Markov matrices to determine the transition probabilities among nodes of the graph. If you look at closely to the method, first, MCL algorithm should be applied after getting the distance by using Euclidean distance, then inflation and diagonal factors which are tuning modulus should be tuned, and finally the threshold using the average of each column should be gotten to distinguish one class from another class. Our method has improved the accuracy through using the threshold, namely the average of each column. Our experimental result shows about 70% of accuracy in average compared to the class that is known before. Also, for the comparison evaluation to other algorithm, the proposed method compared to and analyzed SOM (Self-Organizing Map) clustering algorithm which is divided into neural network and hierarchical clustering. The method shows the better result when compared to hierarchical clustering. In further study, it should be studied whether there will be a similar result when the parameter of inflation gotten from our experiment is applied to other gene expression data. We are also trying to make a systematic method to improve the accuracy by regulating the factors mentioned above.

  • PDF

Gated Multi-channel Network Embedding for Large-scale Mobile App Clustering

  • Yeo-Chan Yoon;Soo Kyun Kim
    • KSII Transactions on Internet and Information Systems (TIIS)
    • /
    • v.17 no.6
    • /
    • pp.1620-1634
    • /
    • 2023
  • This paper studies the task of embedding nodes with multiple graphs representing multiple information channels, which is useful in a large volume of network clustering tasks. By learning a node using multiple graphs, various characteristics of the node can be represented and embedded stably. Existing studies using multi-channel networks have been conducted by integrating heterogeneous graphs or limiting common nodes appearing in multiple graphs to have similar embeddings. Although these methods effectively represent nodes, it also has limitations by assuming that all networks provide the same amount of information. This paper proposes a method to overcome these limitations; The proposed method gives different weights according to the source graph when embedding nodes; the characteristics of the graph with more important information can be reflected more in the node. To this end, a novel method incorporating a multi-channel gate layer is proposed to weigh more important channels and ignore unnecessary data to embed a node with multiple graphs. Empirical experiments demonstrate the effectiveness of the proposed multi-channel-based embedding methods.

Comparisons of MMR, Clustering and Perfect Link Graph Summarization Methods (MMR, 클러스터링, 완전연결기법을 이용한 요약방법 비교)

  • 유준현;변동률;박순철
    • Proceedings of the IEEK Conference
    • /
    • 2003.07d
    • /
    • pp.1319-1322
    • /
    • 2003
  • We present a web document summarizer, simpler more condense than the existing ones, of a search engine. This summarizer generates summaries with a statistic-based summarization method using Clustering or MMR technique to reduce redundancy in the results, and that generates summaries using Perfect Link Graph. We compare the results with the summaries generated by human subjects. For the comparison, we use FScore. Our experimental results verify the accuracy of the summarization methods.

  • PDF

Traffic Speed Prediction Based on Graph Neural Networks for Intelligent Transportation System (지능형 교통 시스템을 위한 Graph Neural Networks 기반 교통 속도 예측)

  • Kim, Sunghoon;Park, Jonghyuk;Choi, Yerim
    • The Journal of The Korea Institute of Intelligent Transport Systems
    • /
    • v.20 no.1
    • /
    • pp.70-85
    • /
    • 2021
  • Deep learning methodology, which has been actively studied in recent years, has improved the performance of artificial intelligence. Accordingly, systems utilizing deep learning have been proposed in various industries. In traffic systems, spatio-temporal graph modeling using GNN was found to be effective in predicting traffic speed. Still, it has a disadvantage that the model is trained inefficiently due to the memory bottleneck. Therefore, in this study, the road network is clustered through the graph clustering algorithm to reduce memory bottlenecks and simultaneously achieve superior performance. In order to verify the proposed method, the similarity of road speed distribution was measured using Jensen-Shannon divergence based on the analysis result of Incheon UTIC data. Then, the road network was clustered by spectrum clustering based on the measured similarity. As a result of the experiments, it was found that when the road network was divided into seven networks, the memory bottleneck was alleviated while recording the best performance compared to the baselines with MAE of 5.52km/h.

Spectral clustering based on the local similarity measure of shared neighbors

  • Cao, Zongqi;Chen, Hongjia;Wang, Xiang
    • ETRI Journal
    • /
    • v.44 no.5
    • /
    • pp.769-779
    • /
    • 2022
  • Spectral clustering has become a typical and efficient clustering method used in a variety of applications. The critical step of spectral clustering is the similarity measurement, which largely determines the performance of the spectral clustering method. In this paper, we propose a novel spectral clustering algorithm based on the local similarity measure of shared neighbors. This similarity measurement exploits the local density information between data points based on the weight of the shared neighbors in a directed k-nearest neighbor graph with only one parameter k, that is, the number of nearest neighbors. Numerical experiments on synthetic and real-world datasets demonstrate that our proposed algorithm outperforms other existing spectral clustering algorithms in terms of the clustering performance measured via the normalized mutual information, clustering accuracy, and F-measure. As an example, the proposed method can provide an improvement of 15.82% in the clustering performance for the Soybean dataset.

An Efficient Conceptual Clustering Scheme (효율적인 개념 클러스터링 기법)

  • Yang, Gi-Chul
    • Journal of Korea Entertainment Industry Association
    • /
    • v.14 no.4
    • /
    • pp.349-354
    • /
    • 2020
  • This paper, firstly, propose a new Clustering scheme Based on Conceptual graphs (CBC) that can describe objects freely and can perform clustering efficiently. The conceptual clustering is one of machine learning technique. The similarity among the objects in conceptual clustering are decided on the bases of concept membership, unlike the general clustering scheme which decide the similarity without considering the context or environment of the objects. A new conceptual clustering scheme, CBC, which can perform efficient conceptual clustering by describing various objects freely with conceptual graphs is introduced in this paper.

Social Network Analysis using Common Neighborhood Subgraph Density (공통 이웃 그래프 밀도를 사용한 소셜 네트워크 분석)

  • Kang, Yoon-Seop;Choi, Seung-Jin
    • Journal of KIISE:Computing Practices and Letters
    • /
    • v.16 no.4
    • /
    • pp.432-436
    • /
    • 2010
  • Finding communities from network data including social networks can be done by clustering the nodes of the network as densely interconnected groups, where keeping interconnection between groups sparse. To exploit a clustering algorithm for community detection task, we need a well-defined similarity measure between network nodes. In this paper, we propose a new similarity measure named "Common Neighborhood Sub-graph density" and combine the similarity with affinity propagation, which is a recently devised clustering algorithm.

A Heuristic Task Allocation Scheme Based on Clustering (클러스터링을 이용한 경험적 태스크 할당 기법)

  • Kim, Seok-Il;Jeon, Jung-Nam;Kim, Gwan-Yu
    • The Transactions of the Korea Information Processing Society
    • /
    • v.6 no.10
    • /
    • pp.2659-2669
    • /
    • 1999
  • This paper a heuristic, clustering based task allocation scheme applicable to non-directed task graph on a distributed system. This scheme firstly builds a task-machine graph, and then applies a clustering process where in a pair of tasks that are connected to the highest cost edge is merged into a big one or a task is allocated to a machine. During the process, the proposed scheme figure out a machine onto which the task allocation may cause deduction of large communication overhead that has incurred between the task and tasks that are already allocated to the machine while the computation costs is slightly increased in the machine. Simulation for the various task graphs shows that the scheduling using the proposed scheme result far better than ones by using the traditional schemes. A comparison with optimal task scheduling also promises that our scheme derives optimal results more occasionally than the traditional schemes do.

  • PDF

Document Summarization Method using Complete Graph (완전그래프를 이용한 문서요약 연구)

  • Lyu, Jun-Hyun;Park, Soon-Cheol
    • Journal of Korea Society of Industrial Information Systems
    • /
    • v.10 no.2
    • /
    • pp.26-31
    • /
    • 2005
  • In this paper, we present the document summarizers which are simpler and more condense than the existing ones generally used in the web search engines. This method is a statistic-based summarization method using the concept of the complete graph. We suppose that each sentence as a vertex and the similarity between two sentences as a link of the graph. We compare this summarizer with those of Clustering and MMR techniques which are well-known as the good summarization methods. For the comparison, we use FScore using the summarization results generated by human subjects. Our experimental results verify the accuracy of this method, being about $30\%$ better than the others.

  • PDF

A Horizontal Partition of the Object-Oriented Database for Efficient Clustering

  • Chung, Chin-Wan;Kim, Chang-Ryong;Lee, Ju-Hong
    • Journal of Electrical Engineering and information Science
    • /
    • v.1 no.1
    • /
    • pp.164-172
    • /
    • 1996
  • The partitioning of related objects should be performed before clustering for an efficient access in object-oriented databases. In this paper, a horizontal partition of related objects in object-oriented databases is presented. All subclass nodes in a class inheritance hierarchy of a schema graph are shrunk to a class node in the graph that is called condensed schema graph because the aggregation hierarchy has more influence on the partition than the class inheritance hierarchy. A set function and an accessibility function are defined to find a maximal subset of related objects among the set of objects in a class. A set function maps a subset of the domain class objects to a subset of the range class objects. An accessibility function maps a subset of the objects of a class into a subset of the objects of the same class through a composition of set functions. The algorithm derived in this paper is to find the related objects of a condensed schema graph using accessibility functions and set functions. The existence of a maximal subset of the related objects in a class is proved to show the validity of the partition algorithm using the accessibility function.

  • PDF