• Title/Summary/Keyword: Genetic parameters

Search Result 1,520, Processing Time 0.03 seconds

Genetic Parameters and Annual Trends for Birth and Weaning Weights of a Northeastern Thai Indigenous Cattle Line

  • Intaratham, W.;Koonawootrittriron, S.;Sopannarath, P.;Graser, H.-U.;Tumwasorn, S.
    • Asian-Australasian Journal of Animal Sciences
    • /
    • v.21 no.4
    • /
    • pp.478-483
    • /
    • 2008
  • Records of a Northeastern Thai indigenous cattle line population were used to estimate genetic parameters and annual trends for calf weights. The data set comprised records of 1,922 and 1,489 animals for birth and weaning weight, respectively born from 1993 to 2004. A bivariate analysis was carried out for variance and covariance components estimations using average information restricted maximum likelihood procedure. Average estimated breeding value and maternal breeding value of the animals born in 1993 were set to zero as a base group. Genetic trends of each trait were calculated by regressing average estimated breeding values and maternal breeding values on birth year of calves. Phenotypic trends for each trait were calculated by regressing the yearly adjusted weight on birth year of calves. The results revealed that the estimate of direct heritability, maternal heritability and maternal permanent environmental variance as a proportion of phenotypic variance for birth and weaning weight was 0.40, 0.14 and 0.04; 0.27, 0.05 and 0.23, respectively. Direct heritability was moderately heritable and genetic improvement through selection can be achieved. The estimate of phenotypic, direct genetic, maternal genetic and maternal permanent environmental correlation between birth and weaning weight was 0.48, 0.65, 0.98 and 0.73, respectively. The phenotypic trend, genetic trends of estimated breeding value and maternal breeding value for birth weight was 0.18, 0.04 and 0.01 kg/year, respectively. The phenotypic trend, genetic trends of estimated breeding value and maternal breeding value for weaning weight was -1.36, 0.32 and 0.03 kg/year, respectively. As maternal genetic effect was considerably less important than direct genetic effect, selection for improved weaning weight of this Northeastern Thai indigenous cattle line can place more emphasis on the direct genetic effect.

Optimization of Engine Mount Using an Enhanced Genetic Algorithm (향상된 유전알고리듬을 이용한 유체마운트의 최적화)

  • Ahn, Young-Kong;Kim, Young-Chan;Yang, Bo-Suk
    • Transactions of the Korean Society for Noise and Vibration Engineering
    • /
    • v.12 no.12
    • /
    • pp.935-942
    • /
    • 2002
  • When designing fluid mounts, design parameters can be varied in order to obtain a desired notch frequency and notch depth. The notch frequency is a function of the mount parameters and is typically selected by the designer to occur at the vibration disturbance frequency. Since the process of choosing these parameters can involve some trial and error, it seems to be a great application for obtaining optimal performance of the mount. Many combinations of parameters are possible to give us the desired notch frequency, but the question is which combination provides the lowest depth. Therefore. an automatic optimal technique is needed to optimize the performance of the fluid mount. In this study. the enhanced genetic algorithm (EGA) is applied to minimizing transmissibility of a fluid mount at the desired notch frequency, and at the notch and resonant frequencies. The EGA is modified genetic algorithm to search global and local optimal solutions of multi-modal function optimization. Furthermore. to reduce the searching time as compare to conventional genetic algorithm and Increase the precision of the solutions, the modified simplex method is combined with the algorithm. The results show that the performance of the optimized mount by using the hybrid algorithm is better than that of the conventional fluid mount.

Computational Prediction of Solvation Free Energies of Amino Acids with Genetic Algorithm

  • Park, Jung-Hum;Lee, Jin-Won;Park, Hwang-Seo
    • Bulletin of the Korean Chemical Society
    • /
    • v.31 no.5
    • /
    • pp.1247-1251
    • /
    • 2010
  • We propose an improved solvent contact model to estimate the solvation free energies of amino acids from individual atomic contributions. The modification of the solvation model involves the optimization of three kinds of parameters in the solvation free energy function: atomic fragmental volume, maximum atomic occupancy, and atomic solvation parameters. All of these atomic parameters for 17 atom types are developed by the operation of a standard genetic algorithm in such a way to minimize the difference between experimental and calculated solvation free energies. The present solvation model is able to predict the experimental solvation free energies of amino acids with the squared correlation coefficients of 0.94 and 0.93 for the parameterization with Gaussian and screened Coulomb potential as the envelope functions, respectively. This result indicates that the improved solvent contact model with the newly developed atomic parameters would be a useful tool for the estimation of the molecular solvation free energy of a protein in aqueous solution.

Determination of Optimal Machining Parameters Using Genetic Algorithm (유전자 알고리즘을 이용한 최적의 가공 조건 결정)

  • Choi, K.H.;Yook, S.H.
    • Journal of Power System Engineering
    • /
    • v.3 no.4
    • /
    • pp.63-68
    • /
    • 1999
  • The determination of the optimal machining parameters in metal cutting, such as cutting speed, feed rate, and depth of cut, is an important aspect in an economic manufacturing process. The main objective in general is either to minimize the production cost or to maximize the production rate. Also there are constraints on all the machining operations which put restrictions on the choice of the machining parameters. In this paper as an objective function the production cost is considered with two constraints, surface finish and cutting power. Genetic Algorithm is applied to determine the optimum machining parameters, and the effectiveness of the applied algorithm is demonstrated by means of an example, turning operation.

  • PDF

Optimization of Device Process Parameters for GaAs-AlGaAs Multiple Quantum Well Avalanche Photodiodes Using Genetic Algorithms (유전 알고리즘을 이용한 다중 양자 우물 구조의 갈륨비소 광수신소자 공정변수의 최적화)

  • 김의승;오창훈;이서구;이봉용;이상렬;명재민;윤일구
    • Journal of the Korean Institute of Electrical and Electronic Material Engineers
    • /
    • v.14 no.3
    • /
    • pp.241-245
    • /
    • 2001
  • In this paper, we present parameter optimization technique for GaAs/AlGaAs multiple quantum well avalanche photodiodes used for image capture mechanism in high-definition system. Even under flawless environment in semiconductor manufacturing process, random variation in process parameters can bring the fluctuation to device performance. The precise modeling for this variation is thus required for accurate prediction of device performance. The precise modeling for this variation is thus required for accurate prediction of device performance. This paper will first use experimental design and neural networks to model the nonlinear relationship between device process parameters and device performance parameters. The derived model was then put into genetic algorithms to acquire optimized device process parameters. From the optimized technique, we can predict device performance before high-volume manufacturign, and also increase production efficiency.

  • PDF

Variance component analysis of growth and production traits in Vanaraja male line chickens using animal model

  • Ullengala, Rajkumar;Prince, L. Leslie Leo;Paswan, Chandan;Haunshi, Santosh;Chatterjee, Rudranath
    • Animal Bioscience
    • /
    • v.34 no.4
    • /
    • pp.471-481
    • /
    • 2021
  • Objective: A comprehensive study was conducted to study the effects of partition of variance on accuracy of genetic parameters and genetic trends of economic traits in Vanaraja male line/project directorate-1 (PD-1) chicken. Methods: Variance component analysis utilizing restricted maximum likelihood animal model was carried out with five generations data to delineate the population status, direct additive, maternal genetic, permanent environmental effects, besides genetic trends and performance of economic traits in PD-1 chickens. Genetic trend was estimated by regression of the estimated average breeding values (BV) on generations. Results: The body weight (BW) and shank length (SL) varied significantly (p≤0.01) among the generations, hatches and sexes. The least squares mean of SL at six weeks, the primary trait was 77.44±0.05 mm. All the production traits, viz., BWs, age at sexual maturity, egg production (EP) and egg weight were significantly influenced by generation. Model four with additive, maternal permanent environmental and residual effects was the best model for juvenile growth traits, except for zero-day BW. The heritability estimates for BW and SL at six weeks (SL6) were 0.20±0.03 and 0.17±0.03, respectively. The BV of SL6 in the population increased linearly from 0.03 to 3.62 mm due to selection. Genetic trend was significant (p≤0.05) for SL6, BW6, and production traits. The average genetic gain of EP40 for each generation was significant (p≤0.05) with an average increase of 0.38 eggs per generation. The average inbreeding coefficient was 0.02 in PD-1 line. Conclusion: The population was in ideal condition with negligible inbreeding and the selection was quite effective with significant genetic gains in each generation for primary trait of selection. The animal model minimized the over-estimation of genetic parameters and improved the accuracy of the BV, thus enabling the breeder to select the suitable breeding strategy for genetic improvement.

Evaluation of Genetic Parameters of Growth Characteristics and Basic Density of Eucalyptus pellita Clones Planted at Two Different Sites in East Kalimantan, Indonesia

  • Alfia Dewi FADWATI;Fanny HIDAYATI;Mohammad NA'IEM
    • Journal of the Korean Wood Science and Technology
    • /
    • v.51 no.3
    • /
    • pp.222-237
    • /
    • 2023
  • Eucalyptus pellita is one of the fast-growing tree species and has become predominant in Indonesian forest plantations. Meanwhile, tree breeding programs with clone development are the best way to provide greater genetic advantages. A better understanding of genetic control on growth and basic density in E. pellita is important for increasing wood productivity and quality. In this study, growth characteristics (tree height, diameter, and volume), basic density and its genetic parameters (heritability, genetic gain and genetic correlation) were determined. The number of clones tested in both trials was 50, divided into 5 blocks, and 5 trees/plot. The results showed that there were significant differences in growth and basic density among clones. There was an interaction between genetics and the environment further indicating the existence of unstable clones. The high heritability was found in tree height (0.82-0.86), diameter (0.82-0.90), and basic density (0.91-0.93). This implies that E. pellita has good opportunities for genetic improvement to increase wood productivity and quality. In addition, the results of genetic correlations among growth characteristics (height, diameter, and volume) and basic density showed positive moderate to highly significant value. It is suggested that these characters may be used to the advantage of the breeder for bringing improvement in these traits simultaneously. Therefore, this study provides important information of the genetic improvement of wood quality in E. pellita in Indonesia.

A Study on Bead Geometry Prediction the GMA Fillet Welding using Genetic Algorithm (유전자 알고리즘을 이용한 GMA 필릿 용접 비드형상 예측에 관한 연구)

  • Kim, Young-Su;Kim, Ill-Soo;Lee, Ji-Hye;Jung, Sung-Myoung;Lee, Jong-Pyo;Park, Min-Ho;Chand, Reenal Ritesh
    • Journal of Welding and Joining
    • /
    • v.30 no.6
    • /
    • pp.126-132
    • /
    • 2012
  • The GMA welding process involves large number of interdependent variables which may affect product quality, productivity and cost effectiveness. The relationships between process parameters for a fillet joint and bead geometry are complex because a number of process parameters are involved. To make the automated GMA welding, a method that predicts bead geometry and accomplishes the desired mechanical properties of the weldment should be developed. The developed method should also cover a wide range of material thicknesses and be applicable for all welding position. For the automatic welding system, the data must be available in the form of mathematical equations. In this study a new intelligent model with genetic algorithm has been proposed to investigate interrelationships between welding parameters and bead geometry for the automated GMA welding process. Through the developed model, the correlation between process parameters and bead geometry obtained from the actual experimental results, predicts that data did not show much of a difference, which means that it is quite suitable for the developed genetic algorithm. Progress to be able to control the process parameters in order to obtain the desired bead shape, as well as the systematic study of the genetic algorithm was developed on the basis of the data obtained through the experiments in this study can be applied. In addition, the developed genetic algorithm has the ability to predict the bead shape of the experimental results with satisfactory accuracy.

Estimation of Genetic Parameters for Pork Belly Components in Yorkshire Pigs

  • Kang, H.S.;Lopez, B.M.;Kim, T.H.;Kim, H.S.;Kim, S.H.;Nam, K.C.;Seo, K.S.
    • Asian-Australasian Journal of Animal Sciences
    • /
    • v.28 no.7
    • /
    • pp.922-925
    • /
    • 2015
  • This study was conducted to estimate the genetic parameters for pork belly traits and muscles in Yorkshire pigs. Each pork belly was cut into nine parts perpendicular to the thoracic vertebrae (6th to 14th). Traits of belly muscles including the deep pectoral, latissimus dorsi, cutaneous trunci, rectus abdominis, external and internal abdominal oblique from 382 purebred pigs were recorded and analyzed using SAS Package (9.1) and Derivative-free restricted maximum likelihood methods. Heritability estimates for belly traits ranged from 0.27 to 0.49, while they were 0.12 to 0.66 for belly muscles. Moderate to high heritability estimates were noted in belly weight (0.33), belly length (0.28), and belly width (0.49). In belly muscles, the latissimus dorsi and deep pectoral, which are located only in the 6th to 9th vertebrae sections, were found to have heritability estimates ranging from 0.21 to 0.29 and 0.23 to 0.35, respectively. Strong heritability estimates were observed in the 7th to 13th sections of cutaneous trunci muscle ranging from 0.42 to 0.66. Genetic correlations of latissimus dorsi m. with belly length were positive (0.50), while cutaneous trunci m. with belly weight also revealed a positive relationship that ranged from 0.35 to 0.47. The estimated genetic parameters indicate that belly weight can be improved by genetic selection. Differences in the levels of heritability occurred among various parameters of Yorkshire pork belly, which should be considered when performing selection to improve pork belly quality. Moreover, these results can provide valuable information that can be used as the basis for further investigations to improve pork belly.

Estimation of environmental effects and genetic parameters of carcass traits on Chikso (Korean brindle cattle)

  • Park, Byoungho;Choi, Tae Jeong;Park, Mi Na;Oh, Sang-Hyon
    • Asian-Australasian Journal of Animal Sciences
    • /
    • v.33 no.4
    • /
    • pp.525-530
    • /
    • 2020
  • Objective: The purpose of this study was i) to identify the characteristics of carcass traits in Chikso by gender, region, age at slaughter, and coat color using the carcass data collected from the nationwide pedigree information and coat color investigation, and ii) to estimate genetic parameters for breed improvement. Methods: A linear model was used to analyze the environmental effects on the carcass traits and to estimate genetic parameters. Analysis of variance was performed using TYPE III sum of squares for the unbalanced data provided by the general linear model procedure. Variance components for genetic parameters was estimated using REMLF90 of the BLUPF90 family programs. Results: Phenotypic performance of carcass weight (CW), eye muscle area (EMA), and backfat thickness (BF) in Chikso were lower than those of Hanwoo. This is a natural outcome because Hanwoo have undergone significant efforts for improvement at the national level, a phenomenon not observed in Chikso. Another factor influencing the above outcome was the smaller population size of Chikso compared to that of Hanwoo's. The heritabilities of CW, EMA, BF, and marbling score in Chikso were estimated as 0.50, 0.37, 0.35, and 0.53, respectively, which were was higher than those of Hanwoo. Conclusion: Based on the genetic parameters that were estimated in this study, it is expected that the carcass traits will improve when the livestock research institutes at each province conduct small-scale performance tests and the semen is provided to farmers after selecting proven bulls using the state-of-art selection technique such as genomic selection.