• Title/Summary/Keyword: Genetic gains

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Genetic Analysis of Pre-weaning and Post-weaning Growth Traits of Mecheri Sheep under Dry Land Farming Conditions

  • Thiruvenkadan, A.K.;Karunanithi, K.;Muralidharan, J.;Babu, R. Narendra
    • Asian-Australasian Journal of Animal Sciences
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    • v.24 no.8
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    • pp.1041-1047
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    • 2011
  • Data on 2,365 Mecheri sheep (1,201 males and 1,164 females), maintained at the Mecheri Sheep Research Station, Pottaneri, India, and recorded between 1979 and 2006, were analysed to study the growth related traits and their genetic control. The body weights at different ages (i.e. at birth, weaning (3 months), 6, 9 and 12 months) were recorded and collected from the birth and growth registers maintained in the farm. The average weights of Mecheri sheep at birth, and at 12 months of age were $2.24{\pm}0.01$ and $16.81{\pm}0.15$ kg respectively. The pre- and post-weaning average daily weight gains were $63.84{\pm}0.75$ and $29.52{\pm}0.43$ g respectively. Study revealed a significant difference with the period of lambing on body weight, weight gain and efficiency in weight gain at different stages of growth. Males were heavier and had a higher weight gain than females at almost all stages of growth and the differences tended to increase with age. The direct heritability estimates increased from birth to six months of age and then decreased. The direct heritabilities of all body weights at different stages of growth were low to moderate in magnitude and the values at birth, weaning, six, nine and 12 months of age were 0.08, 0.17, 0.21, 0.13 and 0.10 respectively. For the estimation of heritability at birth and three months body weights, the direct additive genetic and maternal additive genetic effects have to be taken into account and for the estimation of six months weight, the direct additive genetic and maternal permanent environmental effects have to be included in the model. The estimates of heritability, phenotypic and genetic correlations among the different body weights indicated that the selection for improving the body weights at different traits should be done on the basis of three or six months weight because of higher heritability estimates and having higher genetic correlations with other traits.

Genetic parameters for worm resistance in Santa Inês sheep using the Bayesian animal model

  • Rodrigues, Francelino Neiva;Sarmento, Jose Lindenberg Rocha;Leal, Tania Maria;de Araujo, Adriana Mello;Filho, Luiz Antonio Silva Figueiredo
    • Animal Bioscience
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    • v.34 no.2
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    • pp.185-191
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    • 2021
  • Objective: The objective of this study was to estimate the genetic parameters for worm resistance (WR) and associated characteristics, using the linear-threshold animal model via Bayesian inference in single- and multiple-trait analyses. Methods: Data were collected from a herd of Santa Inês breed sheep. All information was collected with animals submitted to natural contamination conditions. All data (number of eggs per gram of feces [FEC], Famacha score [FS], body condition score [BCS], and hematocrit [HCT]) were collected on the same day. The animals were weighed individually on the day after collection (after 12-h fasting). The WR trait was defined by the multivariate cluster analysis, using the FEC, HCT, BCS, and FS of material collected from naturally infected sheep of the Santa Inês breed. The variance components and genetic parameters for the WR, FEC, HCT, BCS, and FS traits were estimated using the Bayesian inference under the linear and threshold animal model. Results: A low magnitude was obtained for repeatability of worm-related traits. The mean values estimated for heritability were of low-to-high (0.05 to 0.88) magnitude. The FEC, HCT, BCS, FS, and body weight traits showed higher heritability (although low magnitude) in the multiple-trait model due to increased information about traits. All WR characters showed a significant genetic correlation, and heritability estimates ranged from low (0.44; single-trait model) to high (0.88; multiple-trait model). Conclusion: Therefore, we suggest that FS be included as a criterion of ovine genetic selection for endoparasite resistance using the trait defined by multivariate cluster analysis, as it will provide greater genetic gains when compared to any single trait. In addition, its measurement is easy and inexpensive, exhibiting greater heritability and repeatability and a high genetic correlation with the trait of resistance to worms.

Genetic evaluation of sheep for resistance to gastrointestinal nematodes and body size including genomic information

  • Torres, Tatiana Saraiva;Sena, Luciano Silva;dos Santos, Gleyson Vieira;Filho, Luiz Antonio Silva Figueiredo;Barbosa, Bruna Lima;Junior, Antonio de Sousa;Britto, Fabio Barros;Sarmento, Jose Lindenberg Rocha
    • Animal Bioscience
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    • v.34 no.4
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    • pp.516-524
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    • 2021
  • Objective: The genetic evaluation of Santa Inês sheep was performed for resistance to gastrointestinal nematode infection (RGNI) and body size using different relationship matrices to assess the efficiency of including genomic information in the analyses. Methods: There were 1,637 animals in the pedigree and 500, 980, and 980 records of RGNI, thoracic depth (TD), and rump height (RH), respectively. The genomic data consisted of 42,748 SNPs and 388 samples genotyped with the OvineSNP50 BeadChip. The (co)variance components were estimated in single- and multi-trait analyses using the numerator relationship matrix (A) and the hybrid matrix H, which blends A with the genomic relationship matrix (G). The BLUP and single-step genomic BLUP methods were used. The accuracies of estimated breeding values and Spearman rank correlation were also used to assess the feasibility of incorporating genomic information in the analyses. Results: The heritability estimates ranged from 0.11±0.07, for TD (in single-trait analysis using the A matrix), to 0.38±0.08, for RH (using the H matrix in multi-trait analysis). The estimates of genetic correlation ranged from -0.65±0.31 to 0.59±0.19, using A, and from -0.42±0.30 to 0.57±0.16 using H. The gains in accuracy of estimated breeding values ranged from 2.22% to 75.00% with the inclusion of genomic information in the analyses. Conclusion: The inclusion of genomic information will benefit the direct selection for the traits in this study, especially RGNI and TD. More information is necessary to improve the understanding on the genetic relationship between resistance to nematode infection and body size in Santa Inês sheep. The genetic evaluation for the evaluated traits was more efficient when genomic information was included in the analyses.

Tuning of PID Controller for Hydraulic Positioning System Using Genetic Algorithm (유전 알고리즘을 이용한 유압 위치계의 PID 제어기 동조)

  • Kim, Gi-Bum;Park, Seung-Min;Kim, In-Soo
    • Journal of the Korean Society of Manufacturing Process Engineers
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    • v.15 no.3
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    • pp.93-101
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    • 2016
  • This study presents a simple genetic algorithm to systematically design a PID controller for a hydraulic positioning system operated by a proportional solenoid valve. The inverse dead-zone compensator with nonlinear characteristics is used to cancel out the dead-zone phenomenon in the hydraulic system. The object function considering overshoot, settling time, and control input is adopted to search for optimal PID gains. The designed PID controller is compared with the LQG/LTR controller to check the performance of the hydraulic positioning system in the time and frequency domains. The experimental results show that the hydraulic servo system with the proposed PID controller responds effectively to the various types of reference input.

Sliding Mode Controller with Sliding Perturbation Observer Based on Gain Optimization using Genetic Algorithm

  • You, Ki-Sung;Lee, Min-Cheol;Yoo, Wan-Suk
    • Journal of Mechanical Science and Technology
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    • v.18 no.4
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    • pp.630-639
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    • 2004
  • The Stewart platform manipulator is a closed-kinematics chain robot manipulator that is capable of providing high structural rigidity and positional accuracy. However, this is a complex and nonlinear system, so the control performance of the system is not so good. In this paper, a new robust motion control algorithm is proposed. The algorithm uses partial state feedback for a class of nonlinear systems with modeling uncertainties and external disturbances. The major contribution is the design of a robust observer for the state and the perturbation of the Stewart platform, which is combined with a variable structure controller (VSC). The combination of controller and observer provides the robust routine called sliding mode control with sliding perturbation observe. (SMCSPO). The optimal gains of SMCSPO, which is determined by nominal eigenvalues, are easily obtained by genetic algorithm. The proposed fitness function that evaluates the gain optimization is to put sliding function. The control performance of the proposed algorithm is evaluated by the simulation and experiment to apply to the Stewart platform. The results showed high accuracy and good performance.

Autonomous Pole Placement Controller Design of Two-Inertia Motor System Based on Genetic Algorithms (유전자 알고리즘을 사용한 2관성 모터 시스템의 자동 극배치 제어기 설계)

  • Gloria Suh;Park, Jung-Il
    • Journal of the Institute of Electronics Engineers of Korea SC
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    • v.40 no.5
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    • pp.317-325
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    • 2003
  • The vibration, which often occurred in a two inertia motor system, makes it difficult to achieve a quick response of speed and disturbance rejection. This paper provides an autonomous pole assignment technique for three kinds of speed controllers (I-P, I-PD, and State feedback) using GAs(Genetic Algorithms) for a two-inertia motor system. Firstly, the optimal parameters are chosen using GAs in view of reducing overshoot and settling time, then those are used in computing the gains of each controller. Some simulation results verify the effectiveness of the proposed design. The proposed controller is expected to be the autonomous design way for controlling a two-inertia motor system with flexible shaft.

Design of Self-Tuning Fuzzy Logic Controllers using Genetic Algorithms (유전알고리즘을 이용한 자기동조 퍼지 제어기의 설계)

  • Suh, Jae-Kun;Kim, Tae-Eun;Kwon, Hyuk-Jin;Kim, Lark-Kyo;Nam, Moon-Hyon
    • Proceedings of the KIEE Conference
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    • 1996.07b
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    • pp.1374-1376
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    • 1996
  • In this paper We proposed a new method to generate fuzzy logic controllers through genetic algorithm(GA). In designing of fuzzy logic controllers encounters difficulties in the selection of optimized member-ship functions, gains and rule base, which is conventionally achieved by a tedious trial-and-error process. This paper develops genetic algorithms for automatic design of high performance fuzzy logic controllers which can overcome nonlinearities in many engineering control applications. The rule-base is coded in base-7 strings by generated from random function. Which can be presented in discrete fuzzy linguistic value, and using membership function with Gaussian curve. To verify the validity of this fuzzy logic controller it is compared with conventional fuzzy logic controller(FLC) and PID controller.

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Genetic algorithm-based design of a nonlinear PID controller for the temperature control of load-following coolant systems (부하추종 냉각수 시스템의 온도 제어를 위한 유전알고리즘 기반 비선형 PID 제어기 설계)

  • Yu-Soo, LEE;Soon-Kyu, HWANG;Jong-Kap, AHN
    • Journal of the Korean Society of Fisheries and Ocean Technology
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    • v.58 no.4
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    • pp.359-366
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    • 2022
  • In this study, the load fluctuation of the main engine is considered to be a disturbance for the jacket coolant temperature control system of the low-speed two-stroke main diesel engine on the ships. A nonlinear PID temperature control system with satisfactory disturbance rejection performance was designed by rapidly transmitting the load change value to the controller for following the reference set value. The feed-forwarded load fluctuation is considered the set points of the dual loop control system to be changed. Real-coded genetic algorithms were used as an optimization tool to tune the gains for the nonlinear PID controller. ITAE was used as an evaluation function for optimization. For the evaluation function, the engine jacket coolant outlet temperature was considered. As a result of simulating the proposed cascade nonlinear PID control system, it was confirmed that the disturbance caused by the load fluctuation was eliminated with satisfactory performance and that the changed set value was followed.

Trends in Genetic Parameters with Age and Site for Early Implications of Genetic Improvement in Korean White Pine (잣나무의 유전적(遺傳的) 형질(形質) 개량(改良)의 조기검정(早期檢定)을 위한 수령(樹齡) 및 입지별(立地別) 생장(生長)과 유전모수(遺傳母數)의 특성(特性)에 관(關)한 연구(硏究))

  • Kim, Dae Eun;Chon, Sang Keun
    • Journal of Korean Society of Forest Science
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    • v.79 no.1
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    • pp.56-70
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    • 1990
  • Eighteen Korean white pine (P. koraiensis S. et Z.) families were tested in 3 different regions from age 5 to 9. Family and site were significant sources of variation for seedling survival and field growth, whereas the effects of family x site interaction ware relatively small as compared with the former sources of variation. Variance components estimated from the separate and combined sites indicated that the most variabilities were associated with individual trees within plot. Family ${\times}$ site interaction components as a percentage of family variance decreased sharply with age. Heritability estimates varied with testing site and tree age. Combined analyses, however, showed a moderate change in heritability with increasing tree ages, and demonstrated high and stable trends of estimates, particularly in family heritabilities of tree height ($h_F{^2}=0.789-0.798$). The gains estimated from combined analysis have expected maximum or near-maximum efficiencies at age 6 or 7. Given equal intensity of selection, mass selection showed the most efficient gains within and across the sites. However, for the differences between mass and combined selections are small, selection made on the combination of family and within-family would be more effective in improving genetic gains. Indirect selection method indicated that 5-and 6-years height were all good predictors of 9-year-old height with little loss of relative efficiency (less than 10%) as compared with direct family selection at age 9. Phenotypic and genetic correlations computed on the basis of family mean values of height and diameter have shown predominantly high, positive, and statistically significant (1% level) relationships between all tested pairs of traits, which indicates that family growth maintained statistically consistent trends with age. The best families are those that maintained a stable superiority overall sites and ages in growth performance, therefore, it can be suggested that early identification of superior families at age 9 is feasible at age 5 or 6 in Pinus koraiensis S. et Z.

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Estimation of Heritabilities and Genetic Gains for Height and Diameter Growth of Korean White Pine Open-Pollinated Progeny Stands (잣나무 풍매차대검정림(風媒次代檢定林)의 수고(樹高) 및 직경생장(直徑生長)의 유전력(遺傳力)과 개량효과(改良效果)에 관한 연구(硏究))

  • Chon, Sang-Keun;Shin, Man Yong;Chung, Dong-Jun;Jang, Yong-Seok
    • Journal of Korean Society of Forest Science
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    • v.90 no.1
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    • pp.105-112
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    • 2001
  • This study was carried out to analyze the genetic variation and to estimate both heritabilities and genetic gains for height and diameter growth of 20-year-old open-pollinated progenies of Korean white pine in three different sites. For there, analysis of variance for both height and diameter growth was conducted to see if there exist significant differences among families, sites, blocks, and their interactions exist or not and to analyze the variance components for each factor. Mean height and diameter at Gapyeong site were 7.65m and 11.92cm, respectively. they were 7.42m and 11.35cm at Gwangiu site, 6.13m and 8.41cm at Youngdong site, and 7.12m and 10.68cm for the overall sites. The family No. 20 showed the most excellent growth of 7.99m in mean height and 12.14cm in mean diameter for all sites surveyed. The estimates of heritabilities for individual-tree and family were, 0.35~0.73 and 0.65~0.83 for height growth, and 0.12~0.40 and 0.46~0.75 for diameter growth, respectively. For the combined data from all the sites, the estimates of individual tree heritability were 0.60 for height and 0.20 for diameter, and those of family were 0.91 for height and 0.77 for diameter. Heritability estimates varied with testing sites, and those for height were higher than those for diameter in all sites. Given equal intensity of selection, combined selection method provided the most efficient genetic gains for both height and diameter growth.

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