• Title/Summary/Keyword: Genetic Map

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Linkage Map Construction and Molecular Genetic Approach in Capsicum spp.

  • Kim, Byung-Dong
    • Korean Journal of Plant Tissue Culture
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    • v.27 no.5
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    • pp.367-373
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    • 2000
  • We have constructed a molecular linkage map of chili pepper (Capsicum spp.) in an interspecific (C. annuum cv. TF68 x C. chinense cv. Habanero) F$_2$ population of 107 plants with 150 RFLP and 430 AFLP markers. The resulting linkage map consists of 11 large (206-60.3 cM) and 5 small (32.6- 10.3 cM) linkage groups cover-ing 1,320 cM with an average map distance between framework markers of 7.5 cM. Most (80%) of the RFLP markers were pepper-derived clones and these markers were evenly distributed across the genome. By using 30 primer combinations, 444 AFLP markers were generated in the F$_2$population. The majority of the AFLP markers clustered in each linkage group, although PstI/MseI markers were more evenly distributed than Eco RI/MseI markers within the linkage groups. Genes for biosynthesis of carotenoids and capsaicinoids were mapped on our linkage map. This map will provide the basis of studying secondary metabolites in pepper.

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A study of aerobic and anaerobic inducible genes using Mu dJ(Km lac) operon fusion in salmonella typhimurium (Salmonella typhimurium에서 Mu dJ(Km lac) operon fusion을 이용한 산소, 무산소 유도 유전자에 관한 연구)

  • 김종선;우영대;박종희;김영권;이인수;박용근
    • Korean Journal of Microbiology
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    • v.27 no.3
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    • pp.201-209
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    • 1989
  • Using Mu dJ(Km lac) operon fusion, several oxygen-regulated genetic loci were identified in Salmonella typhimurium. Nine aerobically inducible(oxi) and thirteen anaerobically inducible(ani) operon fusions were newly identified. Based on the control by oxrA regulatory locus, the ani-lacZ fusions were grouped into two classes: class I loci were regulated by oxrA regulatory locus; class II genes were not affected by this locus. Some of the ani-lacZ fusions had required growth in CAA and LB before they exhibited the inducible phinotype. Most of all ani-lacZ fusions were repressed by nitrate and fumarate. Three of the ani loci were mapped into $59{\pm}0.14$ map unit (YK114), $64{\pm}0.5$ map unit(YK120), and $93{\pm}0.29$ map unit(YK112) by testing the cotransduction frequency, respectively.

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A Study on Compressor Map Identification using Artificial Intelligent Technique and Performance Deck Data (인공지능 및 성능덱 데이터를 이용한 압축기 성능도 식별에 관한 연구)

  • Kong Chang-Duck;Ki Ja-Young;Lee Chang-Ho
    • Proceedings of the Korean Society of Propulsion Engineers Conference
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    • 2005.11a
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    • pp.149-153
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    • 2005
  • In order to estimate the gas turbine engine performance precisely, the component maps containing their own performance characteristics should be needed. In this study a component map generation method which may identify compressor map conversely from a performance deck provided by engine manufacturer using genetic algorithms was newly proposed. As a demonstration example for this study, the PW 206C turbo shaft engine for the tilt rotor type Smart UAV (Unmanned Aerial Vehicle). In ordo to verify the proposed method, steady-state performance analysis results using the newly generated compressor map was compared with them performed by EEPP(Estimated Engine Performance Program) deck provided by engine manufacturer. And also the performance results using the identified maps were compared with them using the traditional scaling method. In this investigation, it was found that the newly proposed map generation method would be more effective than the traditional scaling method.

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A Multiresolution Stereo Matching Based on Genetic Algorithm using Edge Information (에지 정보를 이용한 유전 알고리즘 기반의 다해상도 스테레오 정합)

  • Hong, Seok-Keun;Cho, Seok-Je
    • The KIPS Transactions:PartB
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    • v.17B no.1
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    • pp.63-68
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    • 2010
  • In this paper, we propose a multiresolution stereo matching method based on genetic algorithm using edge information. The proposed approach considers the matching environment as an optimization problem and finds the solution by using a genetic algorithm. A cost function composes of certain constraints which are commonly used in stereo matching. We defines the structure of chromosomes using edge pixel information of reference image of stereo pair. To increase the efficiency of process, we apply image pyramid method to stereo matching and calculate the initial disparity map at the coarsest resolution. Then initial disparity map is propagated to the next finer resolution, interpolated and performed disparity refinement. We valid our approach not only reduce the search time for correspondence but alse ensure the validity of matching.

A Genetic Algorithm-based Construction Mechanism for FCM and Its Empirical Analysis of Decision Support Performance : Emphasis on Solving Corporate Software Sales Problem (유전자 알고리즘을 이용한 퍼지인식도 생성 메커니즘의 의사결정 효과성에 관한 실증연구 : 기업용 소프트웨어 판매 문제를 중심으로)

  • Chung, Nam-Ho;Lee, Nam-Ho;Lee, Kun-Chang
    • Korean Management Science Review
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    • v.24 no.2
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    • pp.157-176
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    • 2007
  • Fuzzy cognitive map(FCM) has long been used as an effective way of constructing the human's decision making process explicitly. By taking advantage of this feature, FCM has been extensively used in providing what-if solutions to a wide variety of business decision making problems. In contrast, the goal-seeking analysis mechanism by using the FCM is rarely observed in literature, which remains a research void in the fields of FCM. In this sense, this study proposes a new type of the FCM-based goal-seeking analysis which is based on utilizing the genetic algorithm. Its main recipe lies in the fact that the what-if analysis as well as goal-seeking analysis are enabled very effectively by incorporating the genetic algorithm into the FCM-driven inference process. To prove the empirical validity of the proposed approach, valid questionnaires were gathered from a number of experts on software sales, and analyzed statistically. Results showed that the proposed approach is robust and significant.

Genome Mapping Technology And Its Application In Plant Breeding (작물 육종에서 분자유전자 지도의 이용)

  • 은무영
    • Proceedings of the Botanical Society of Korea Conference
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    • 1995.07a
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    • pp.57-86
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    • 1995
  • Molecular mapping of plant genomes has progressed rapidly since Bostein et al.(1980) introduced the idea of constructing linkage maps of human genome based on restriction fragment length polymorphism (RFLP) markers. In recent years, the development of protein and DNA markers has stimulated interest for the new approaches to plant improvement. While classical maps based on morphological mutant markers have provided important insights into the plant genetics and cytology, the molecular maps based on molecular markers have a number of inherent advatages over classical genetic maps for the applications in genetic studies and/or breeding schemes. Isozymes and DNA markers are numerous, discrete, non-deleterious, codominant, and almost entirely free of environmental and epistatic interactions. For these reasons, they are widely used in constructing detailed linkage maps in a number of plant species. Plant breeders improve crops by selecting plants with desirable phenotypes. However a plant's phenotyes is often under genetic control, positioning at different "quantitative trait loci" (QTLs) together with environmental effects. Molecular maps provide a possible way to determine the effect of the individual gene that combines to produce a quantitative trait because the segregation of a large number of markers can be followed in a single genetic cross. Using market-assisted selection, plants that contain several favorable genes for the trait and do not contain unfavourable segments can be obtained during early breeding processes. Providing molecular maps are available, valuable data relevant to the taxonomic relationships and chromosome evolution can be accumulated by comparative mapping and also the structural relationships between linkage map and physical map can be identified by cDNA sequencing. After constructing high density maps, it will be possible to clone genes, whose products are unknown, such as semidwarf and disease resistance genes. However, much attention has to be paid to level-up the basic knowledge of genetics, physiology, biochemistry, plant pathology, entomology, microbiology, and so on. It must also be kept in mind that scientists in various fields will have to make another take off by intensive cooperation together for early integration and utilization of these newly emerging high-techs in practical breeding. breeding.

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A whole genomic scan to detect selection signatures between Berkshire and Korean native pig breeds

  • Edea, Zewdu;Kim, Kwan-Suk
    • Journal of Animal Science and Technology
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    • v.56 no.7
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    • pp.23.1-23.7
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    • 2014
  • Background: Scanning of the genome for selection signatures between breeds may play important role in understanding the underlie causes for observable phenotypic variations. The discovery of high density single nucleotide polymorphisms (SNPs) provide a useful starting point to perform genome-wide scan in pig populations in order to identify loci/candidate genes underlie phenotypic variation in pig breeds and facilitate genetic improvement programs. However, prior to this study genomic region under selection in commercially selected Berkshire and Korean native pig breeds has never been detected using high density SNP markers. To this end, we have genotyped 45 animals using Porcine SNP60 chip to detect selection signatures in the genome of the two breeds by using the $F_{ST}$ approach. Results: In the comparison of Berkshire and KNP breeds using the FDIST approach, a total of 1108 outlier loci (3.48%) were significantly different from zero at 99% confidence level with 870 of the outlier SNPs displaying high level of genetic differentiation ($F_{ST}{\geq}0.490$). The identified candidate genes were involved in a wide array of biological processes and molecular functions. Results revealed that 19 candidate genes were enriched in phosphate metabolism (GO: 0006796; ADCK1, ACYP1, CAMK2D, CDK13, CDK13, ERN1, GALK2, INPP1; MAK, MAP2K5, MAP3K1, MAPK14, P14KB, PIK3C3, PRKC1, PTPRK, RNASEL, THBS1, BRAF, VRK1). We have identified a set of candidate genes under selection and have known to be involved in growth, size and pork quality (CART, AGL, CF7L2, MAP2K5, DLK1, GLI3, CA3 and MC3R), ear morphology and size (HMGA2 and SOX5) stress response (ATF2, MSRB3, TMTC3 and SCAF8) and immune response (HCST and RYR1). Conclusions: Some of the genes may be used to facilitate genetic improvement programs. Our results also provide insights for better understanding of the process and influence of breed development on the pattern of genetic variations.

Improved Single Feistel Circuit Supporter by A Chaotic Genetic Operator

  • JarJar, Abdellatif
    • Journal of Multimedia Information System
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    • v.7 no.2
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    • pp.165-174
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    • 2020
  • This document outlines a new color image encryption technology development. After splitting the original image into 240-bit blocks and modifying the first block by an initialization vector, an improved Feistel circuit is applied, sponsored by a genetic crossover operator and then strong chaining between the encrypted block and the next clear block is attached to set up the confusion-diffusion and heighten the avalanche effect, which protects the system from any known attack. Simulations carried out on a large database of color images of different sizes and formats prove the robustness of such a system.