• Title/Summary/Keyword: Genetic Factor

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Genetic Stability of Magnaporthe oryzae during Successive Passages through Rice Plants and on Artificial Medium

  • Park, Sook-Young;Chi, Myoung-Hwan;Milgroom, Michael G.;Kim, Hyo-Jung;Han, Seong-Sook;Kang, Seog-Chan;Lee, Yong-Hwan
    • The Plant Pathology Journal
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    • v.26 no.4
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    • pp.313-320
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    • 2010
  • Genetic instability of the rice blast fungus Magnaporthe oryzae has been suggested as a major factor underlying the rapid breakdown of host resistance in the field. However, little information is available on the mechanism of genetic instability. In this study, we assessed the stability of repetitive DNA elements and several key phenotypic traits important for pathogenesis after serially transferring two isolates though rice plants and an artificial medium. Using isolate 70-15, we obtained a total of 176 single-spore isolates from 10 successive rounds of culturing on artificial medium. Another 20 isolates were obtained from germ tubes formed at the basal and apical cells of 10 three-celled conidia. Additionally, 60 isolates were obtained from isolate KJ201 after serial transfers through rice plants and an artificial medium. No apparent differences in phenotypes, including mycelial growth, conidial morphologies, conidiation, conidial germination, appressorium formation, and virulence, or in DNA fingerprints using MGR586, MAGGY, Pot2, LINE, MG-SINE and PWL2 as probes were observed among isolates from the same parent isolate. Southern hybridization and sequence analysis of two avirulence genes, AVR-Pita1 and AVR-Pikm, showed that both genes were also maintained stably during 10 successive generations on medium and plants. However, one reversible loss of restriction fragments was found in the telomere-linked helicase gene (TLH1) family, suggesting some telomere regions may be more unstable than the rest of the genome. Taken together, our results suggest that phenotype and genotype of M. oryzae isolates do not noticeably change, at least up to 10 successive generations on a cultural medium and in host plants.

Hybrid Feature Selection Using Genetic Algorithm and Information Theory

  • Cho, Jae Hoon;Lee, Dae-Jong;Park, Jin-Il;Chun, Myung-Geun
    • International Journal of Fuzzy Logic and Intelligent Systems
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    • v.13 no.1
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    • pp.73-82
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    • 2013
  • In pattern classification, feature selection is an important factor in the performance of classifiers. In particular, when classifying a large number of features or variables, the accuracy and computational time of the classifier can be improved by using the relevant feature subset to remove the irrelevant, redundant, or noisy data. The proposed method consists of two parts: a wrapper part with an improved genetic algorithm(GA) using a new reproduction method and a filter part using mutual information. We also considered feature selection methods based on mutual information(MI) to improve computational complexity. Experimental results show that this method can achieve better performance in pattern recognition problems than other conventional solutions.

Search Method for Consensus Pattern of Transcription Factor Binding Sites in Promoter Region (프로모터 영역의 전사인자 결합부위 Consensus 패턴 탐색 방법)

  • Kim, Ki-Bong
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.9 no.5
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    • pp.1218-1224
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    • 2008
  • Located on the upstream of a gene, the promoter region that plays a very important role in the control of gene expression as a signal part has various binding sites for transcription factors. These binding sites are present in various parts of the promoter region and assume an aspect of highly conserved consensus sequence pattern. This paper deals with the introductions of search methods for consensus pattern, including Wataru method, EM algorithm, MEME algorithm, Genetic algorithm and Phylogenetic Footprinting method, and intends to give future prospects of research on this field.

Rhinovirus and childhood asthma: an update

  • Song, Dae Jin
    • Clinical and Experimental Pediatrics
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    • v.59 no.11
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    • pp.432-439
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    • 2016
  • Asthma is recognized as a complex disease resulting from interactions between multiple genetic and environmental factors. Accumulating evidence suggests that respiratory viral infections in early life constitute a major environmental risk factor for the development of childhood asthma. Respiratory viral infections have also been recognized as the most common cause of asthma exacerbation. The advent of molecular diagnostics to detect respiratory viruses has provided new insights into the role of human rhinovirus (HRV) infections in the pathogenesis of asthma. However, it is still unclear whether HRV infections cause asthma or if wheezing with HRV infection is simply a predictor of childhood asthma. Recent clinical and experimental studies have identified plausible pathways by which HRV infection could cause asthma, particularly in a susceptible host, and exacerbate disease. Airway epithelial cells, the primary site of infection and replication of HRV, play a key role in these processes. Details regarding the role of genetic factors, including ORMDL3, are beginning to emerge. This review discusses recent clinical and experimental evidence for the role of HRV infection in the development and exacerbation of childhood asthma and the potential underlying mechanisms that have been proposed.

Intelligent Control Method Using Genetic Algorithm and Fuzzy Logic Controller (유전자 알고리즘과 퍼지 논리 제어기를 이용한 지능 제어 방식)

  • 김주웅;이승형;엄기환
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.5 no.7
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    • pp.1374-1383
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    • 2001
  • In the fuzzy control method behaves more robustness than conventional control method, we propose a intelligent control method that membership functions and scaling factor of the fuzzy logic controller are optimized by genetic algorithm under off-line, and then fuzzy logic controller is constructed by the optimization parameters under on-line. In order to verify the usefulness of the proposed control method, we are applied to one link manipulator, and confirmed that the proposed control method is reduced the fuzzy rule base and is the better performance than the conventional fuzzy control method.

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Design of GA-Fuzzy Precompensator of TCSC-PSS for Enhancement of Power System Stability (전력계통 안정도 향상을 위한 TCSC 안정화 장치의 GA-퍼지 전 보상기 설계)

  • Wang Yong-Peel;Chung Mun-Kyu;Chung Hyeng-Hwan
    • The Transactions of the Korean Institute of Electrical Engineers A
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    • v.54 no.2
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    • pp.51-60
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    • 2005
  • In this paper, we design the GA-fuzzy precompensator of a Power System Stabilizer for Thyristor Controlled Series Capacitor(TCSC-PSS) for enhancement of power system stability. Here a fuzzy precompensator is designed as a fuzzy logic-based precompensation approach for TCSC-PSS. This scheme is easily implemented by adding a fuzzy precompensator to an existing TCSC-PSS. And we optimize the fuzzy precompensator with a genetic algorithm for complements the demerit such as the difficulty of the component selection of fuzzy controller, namely, scaling factor, membership function and control rules. Nonlinear simulation results show that the proposed control technique is superior to conventional TCSC-PSS in dynamic responses over the wide range of operating conditions and in convinced robust and reliable in view of structure.

Environmental Risk Factors for Children and Adolescents Suffering from Depressive Disorder : Clinical Aspects (소아청소년 우울증에서의 환경적 위험 인자들과 임상적 의미)

  • Lee, Moon-Soo
    • Journal of the Korean Academy of Child and Adolescent Psychiatry
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    • v.21 no.3
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    • pp.141-146
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    • 2010
  • This summary of literature during the past year reviews published studies relating to risk factors for depressive disorders in children and adolescents. Risk factors include environmental toxins, socio-environmental, and genetic factors. As depression has a complex, multifactorial causal mechanism, it is likely that the accumulation and/ or interaction among multiple risk factors lead to depression. Findings related to the result of toxin exposure have been difficult to interpret given that risk factors tend to interact and that higher mental functions are not easily measurable. However, some findings have been consistent. Clinical research data has also shown that the risk for negative outcomes may be modified both by genetic and environmental factors through a gene environment interplay mechanism.

An Optimum Selection of Dual Coding Subfield Pattern for Plasma Displays

  • Kwak, Dong-Chan;Kim, Choon-Woo
    • 한국정보디스플레이학회:학술대회논문집
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    • 2003.07a
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    • pp.730-733
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    • 2003
  • Dual coding technique is one of the popular techniques to reduce the dynamic false contours on PDP. Subfield pattern is a key factor affecting the performance of dual coding technique. In this paper, an optimum subfield selection method based on genetic algorithm is proposed. Two types of string structures are defined to account for all the possible configurations of the dual coding subfield patterns. Genetic operators are proposed for optimization of dual coding subfield pattern. Quantitative measures to describe degrees of dynamic false contours and checkerboard patterns are defined. Experimental results indicate that dual coding subfield pattern that is determined by proposed method reduces dynamic false contours and checkerboard patterns.

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A Design of the Robust Servo Controller for DC Servo-Motor Using Genetic Algorithm (유전알고리즘을 이용한 강인한 DC 서보제어기의 설계)

  • Kim, Dong-Wan;Hwang, Gi-Hyun;Hwang, Hyun-Joon;Nam, Jing-Lak;Park, June-Ho
    • Proceedings of the KIEE Conference
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    • 1999.07b
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    • pp.812-814
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    • 1999
  • In this paper, we are applied the Genetic Algorithm (GA) to design of fuzzy logic controller (FLC) for a DC Servo-Motor Speed Control. GA is used to design of the membership functions and scaling factor of FLC. To evaluate the performances of the proposed FLC, we make an experiment on FLC for the speed control of an actual DC servo-motor system with nonlinear characteristics. Experimental results show that proposed controller have better performance than those of PD controller.

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Pattern Optimization of Intentional Blade Mistuning for the Reduction of the Forced Response Using Genetic Algorithm

  • Park, Byeong-Keun
    • Journal of Mechanical Science and Technology
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    • v.17 no.7
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    • pp.966-977
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    • 2003
  • This paper investigates how intentional mistuning of bladed disks reduces their sensitivity to unintentional random mistuning. The class of intentionally mistuned disks considered here is limited, for cost reasons, to arrangements of two types of blades (A and B, say). A two-step procedure is then described to optimize the arrangement of these blades around the disk to reduce the effects of unintentional random mistuning. First, a pure optimization effort is undertaken to obtain the pattern (s) of the A and B blades that yields small/the smallest value of the largest amplitude of response to a given excitation in the absence of unintentional random mistuning using Genetic Algorithm. Then, in the second step, a qualitative/quantitative estimate of the sensitivity for the optimized intentionally mistuned bladed disks with respect to unintentional random mistuning is performed by analyzing their amplification factor, probability density function and passband/stopband structures. Examples of application with simple bladed disk models demonstrate the significant benefits of using this class of intentionally mistuned disks.