• Title/Summary/Keyword: General Linear Model

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Polymorphism Identification, RH Mapping and Association of ${\alpha}$-Lactalbumin Gene with Milk Performance Traits in Chinese Holstein

  • Zhang, Jian;Sun, Dongxiao;Womack, J.E.;Zhang, Yi;Wang, Yachun;Zhang, Yuan
    • Asian-Australasian Journal of Animal Sciences
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    • v.20 no.9
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    • pp.1327-1333
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    • 2007
  • Lactose synthase catalyses the formation of lactose which is the major osmole of bovine milk and regulates the milk volume. Alpha-lactalbumin (${\alpha}$-LA) is involved in the synthesis of lactose synthase in the mammary gland. Therefore ${\alpha}$-LA is regarded as a plausible candidate gene for the milk yield trait. To determine whether ${\alpha}$-LA is associated with milk performance traits, 1,028 Chinese Holstein cows were used to detect polymorphisms in the ${\alpha}$-LA by means of single-strand conformation polymorphism (SSCP). Two nucleotide transitions were identified in the 5'flanking region and intron 3 of ${\alpha}$-LA. Associations of such polymorphisms with five milk performance traits were analyzed using a general linear model procedure. No significant associations were observed between these polymorphisms and the five milk performance traits (p>0.05). RH mapping placed ${\alpha}$-LA on BTA5q21, linked most closely to markers U63110, CC537786 and L10347 (LOD>8.3), which is far distant from the region of the quantitative trait locus (QTL) on bovine chromosome 5 for variation in the milk yield trait. In summary, based on our findings, we eliminated these SNPs from having an effect on milk performance traits.

Multidimensional scaling of categorical data using the partition method (분할법을 활용한 범주형자료의 다차원척도법)

  • Shin, Sang Min;Chun, Sun-Kyung;Choi, Yong-Seok
    • The Korean Journal of Applied Statistics
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    • v.31 no.1
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    • pp.67-75
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    • 2018
  • Multidimensional scaling (MDS) is an exploratory analysis of multivariate data to represent the dissimilarity among objects in the geometric low-dimensional space. However, a general MDS map only shows the information of objects without any information about variables. In this study, we used MDS based on the algorithm of Torgerson (Theory and Methods of Scaling, Wiley, 1958) to visualize some clusters of objects in categorical data. For this, we convert given data into a multiple indicator matrix. Additionally, we added the information of levels for each categorical variable on the MDS map by applying the partition method of Shin et al. (Korean Journal of Applied Statistics, 28, 1171-1180, 2015). Therefore, we can find information on the similarity among objects as well as find associations among categorical variables using the proposed MDS map.

Analysis on the Stress Response Inventory and Heart Rate Variability of Dysmenorrhoea Patients (일부 월경통(月經通) 환자의 스트레스 반응 척도와 심박변이도상의 특징 고찰)

  • Lee, Ji-Yung;Lee, Jin-Moo;Lee, Chang-Hoon;Cho, Jung-Hoon;Jang, Jun-Bock;Lee, Kyung-Sub
    • The Journal of Korean Obstetrics and Gynecology
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    • v.21 no.1
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    • pp.216-230
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    • 2008
  • Purpose: The purpose of this study is to analysis on the Stress Response Inventory(SRI) and Heart Rate Variability (HRV) of some dysmenorrhoea patients. Methods: We studied 34 patients visiting OO Medical Center from May 2007 to November 2007. And the severity of dysmenorrhoea were measured by Multidimensional Verbal Rating scale(MVRS), Verbal Rating scale (VRS) and Visual Analog Scale(VAS). And SRI and HRV were recorded. Results: According to comparison of Means of HRV values among the groups, most of them were not statistically significant. But the comparison of Means of SRI, the points of almost all values were kept by order of Severe-Moderate-Mild-None group. Most of them are statistically significant. According to correlation analysis between dysmenorrhoea scale and HRV, most of them were not statistically significant. But the correlation analysis between HRV and SRI, there were some correlations. And the correlation analysis between SRI and dysmenorrhoea scale, most of them were statistically significant. According to General Linear Model of Dysmenorrhoea $scale^{\ast}SRI$ and HRV. Dysmenorrhoea scale and SRI influenced values of HRV. But it is hard to conclude the relationship between Dysmenorrhoea $scale^{\ast}SRI$ and HRV Conclusion: The results suggest that stress is related to dysmenorrhoea. But the relation between dysmenorrhoea and HRV was hard to conclude. We need more study for settling the relation between dysmenorrhoea and HRV.

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Field data analyses for products with multiple-modes of failure (고장원인이 여럿인 제품의 사용현장 데이터 분석)

  • 배도선;최인수;황용근
    • The Korean Journal of Applied Statistics
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    • v.8 no.1
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    • pp.89-104
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    • 1995
  • This paper is concerned with the method of estimating lifetime distributin from field data for products with multiple modes of failure. When product failures occur within warranty period, a manufacturer can obtain failure-record data; failure times, causes of failure, and covariates. Since these data are seriously incomplete for satisfactory inference, that is, only failures occured during warrantly period may be recorded, it is usually necessary to incoporate the failure-record data by taking a supplementary sample of items obtained following up a portion of products that survive warranty time. The log linear function is considered as a model for describing the relation between failure time of a product and covariates. General methods for obtaining pseudo maximum likelihood estimators(PMLEs) for the parameters are outlined and their asymptotic properties are studied, and specific formulas for exponential or Weibull distribution are obtained. Effects of follow-up percentage on the PMLEs are investigated. Extensions to calendar time warranty or calendar and obtaining time warranty are also considered.

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The Design and Performance Evaluation of a Parallelogram Type Magnetic Spring Suspension for Commercial Vehicle Seat (상용차 시트용 평행사변형구조 마그네틱 현가기구의 설계 및 성능평가)

  • Kwac, Lee Ku;Kim, Hong Gun;Shin, Hee Jae;Jung, Young Bae;Song, Jung Sang
    • Transactions of the Korean Society of Mechanical Engineers A
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    • v.39 no.4
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    • pp.353-360
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    • 2015
  • Commercial drivers feel tired more than the general public, because their driving times are long and they experience more idle vibration. In this study, we developed a nonlinear model of a magnetic, linear spring seat suspension to determine the optimal design to improve ride comfort. The resonant frequency for the optimal design of the suspension was found to be 3.5 Hz, and the stiffness was analyzed through displacement-load experiments. Additionally, the vibration transmissibility was analyzed by the suspension stiffness, and the existing coil spring type vibration transmissibility was found to be 0.99. A parallelogram type magnetic spring was determined to result in a better performance than the existing spring with a vibration transmissibility of 0.823.

A Study on the Multi-Level Artificial Neural Networks Using Genetic Algorithm for Preliminary Structural Design (예비 구조설계를 위한 유전알고리즘을 이용한 다단계 인공신경망에 관한 연구)

  • Choi, Byoung Han
    • Journal of Korean Society of Steel Construction
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    • v.16 no.4 s.71
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    • pp.443-452
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    • 2004
  • Recently, the Artificial Neural Network(ANN) which can organize complex non-linear problems by effectively applying the parallel computational model that is similar to the human brain, was adopted in the wide department of technology and resulted in many successful applications. In this study, a more appropriate formal method is suggested for the preliminary structural design stage controlled merely by the designer's experience and intuition. To do so, this study proposes a multi-level ANN according to the general progressive structural design procedure, using Back-Propagation Algorithm (BP) and Genetic Algorithm (GA) for the ANN learning. The preliminary structural design of cable-stayed bridges was applied to illustrate the applicability of the study formulated as stated above, and the results of two different learning methods were compared.

Associations of Polymorphisms in Four Immune-related Genes with Antibody Kinetics and Body Weight in Chickens

  • Ahmed, A.S.
    • Asian-Australasian Journal of Animal Sciences
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    • v.23 no.8
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    • pp.1089-1095
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    • 2010
  • Four biological candidate genes, natural resistance associated macrophage protein 1 (SLC11A1 or NRAMP), prosaposin (PSAP), interferon Gamma (IFNG), and toll-like receptor 4 (TLR4), were examined to identify single nucleotide polymorphisms (SNP) and associations of the SNP with antibody response kinetics in hens. An $F_2$ population was produced by mating $G_0$ highly inbred (<99%) males of two MHC-congenic Fayoumi lines with highly inbred Leghorn hens. The $F_2$ hens (n = 158) were injected twice with SRBC and whole, fixed Brucella abortus (BA). Blood samples were obtained before each immunization, at 7 d after primary immunization, and at several time points after secondary immunization. Minimum titers (Ymin) and the time needed to reach them (Tmin), and maximum (Ymax) titers and the time needed to reach them (Tmax), were estimated from the seven post-secondary immunization titers using a nonlinear regression model. The $F_2$ hens were genotyped for the four candidate genes by using PCR-RFLP for one SNP per gene, which identified the parental allele. General linear models were used to test associations of SNP genotypes with antibody response parameters and BW measured at 4 ages. The IFNG SNP was highly significantly (p<0.0125) associated with primary response to SRBC, Tmin to BA, Ymin to BA, and 12-week BW. The current study demonstrated that the novel IFNG promoter SNP was associated with antibody kinetics for BA and SRBC in laying hens, and also with BW, suggesting that this cytokine may play a pivotal role in the relationship between immune function and growth.

A Study on the Serum Lipid, Digestive Enzymes and Thyroid Hormone in Sasang Constitutional Medicine (사상체질별 혈중지질, 소화효소 및 갑상선 호르몬의 비교 연구)

  • Choi, Ae-Ryun;Lee, Si-Woo;Koo, Deok-Mo
    • Journal of Sasang Constitutional Medicine
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    • v.22 no.2
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    • pp.60-69
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    • 2010
  • 1. Objectives: The purpose of this study was to analyze the serum lipid, digestive enzymes, thyroid hormone of each Sasang type groups which were classified by Sasang medicine specialist. 2. Methode: The subjects were 1084 (male:female=399:685) person with 371 of Taeeum type, 324 of Soeum type, 389 of Soyang type after the Sasang type classification. The blood samples of the 1084 subjects were to analyze the serum lipid(triglyceride, total cholesterol, HDL-cholesterol, LDL-cholesterol), digestive enzymes(lipase, amylase), thyroid hormone(T3, TSH). The general linear model (SPSS 12.0) were used for the analysis. 3. Results: Taeeum type group ($133.50\pm89.84$, $189.41\pm33.11$, $107.29\pm28.66$) showed significantly higher triglyceride, total cholesterol, LDL-cholesterol than other two group. In digestive enzymes(lipase, amylase), we found significant differences in the order of Soeum>Soyang>Taeeum. Soeum type group($116.23\pm21.38$) has lower T3 than Soyang type group ($119.90\pm21.60$) with marginal significance (p=0.066). 4. Conclusions: The Results of present study showed that Taeeum type showed significantly highest in triglyceride, total cholesterol, LDL-cholesterol. Soeum type showed significantly highest in digestive enzymes. Blood sample of each Sasang type group will serve as an important evidence for further study showing that the Sasang typology has biological basis.

Wave Reflections from Breakwaters Having Resonance Channels with Perforated Plates (유공판을 갖는 공진수로 내장형 방파제의 반사특성)

  • Kim, Jeongseok;Seo, Jihye;Lee, Younghoon;Lee, Joongwoo;Park, Woosun
    • Proceedings of the Korean Institute of Navigation and Port Research Conference
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    • 2013.10a
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    • pp.149-150
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    • 2013
  • Recently, various types of perforated breakwaters are being constructed for protecting offshore storm waves. In general, perforated breakwaters have wave chambers with perforated walls at seaside. Purposes of the wave chambers are to reduce wave reflections and maximum wave forces acting on the breakwater. Impact wave forces due to wave breaking can attack to the perforated wall directly, so the effects have to be considered in the design of the perforated wall carefully. Using resonance channels for wave energy dissipation, a new concept perforated breakwater is proposed, which is free from impact loads. Numerical simulation was made for wave reflection characteristics of the breakwater with respect to major design parameters. Numerical analysis was carried out using the Galerkin's FE model based on the linear potential theory considering energy dissipation on the perforated plate. Variations of wave reflection was investigated according to perforated ratios of perforated plate.

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Accuracy of virtual models in the assessment of maxillary defects

  • Kamburoglu, Kivanc;Kursun, Sebnem;Kilic, Cenk;Ozen, Tuncer
    • Imaging Science in Dentistry
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    • v.45 no.1
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    • pp.23-29
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    • 2015
  • Purpose: This study aimed to assess the reliability of measurements performed on three-dimensional (3D) virtual models of maxillary defects obtained using cone-beam computed tomography (CBCT) and 3D optical scanning. Materials and Methods: Mechanical cavities simulating maxillary defects were prepared on the hard palate of nine cadavers. Images were obtained using a CBCT unit at three different fields-of-views (FOVs) and voxel sizes: 1) $60{\times}60mm$ FOV, $0.125mm^3$ ($FOV_{60}$); 2) $80{\times}80mm$ FOV, $0.160mm^3$ ($FOV_{80}$); and 3) $100{\times}100mm$ FOV, $0.250mm^3$ ($FOV_{100}$). Superimposition of the images was performed using software called VRMesh Design. Automated volume measurements were conducted, and differences between surfaces were demonstrated. Silicon impressions obtained from the defects were also scanned with a 3D optical scanner. Virtual models obtained using VRMesh Design were compared with impressions obtained by scanning silicon models. Gold standard volumes of the impression models were then compared with CBCT and 3D scanner measurements. Further, the general linear model was used, and the significance was set to p=0.05. Results: A comparison of the results obtained by the observers and methods revealed the p values to be smaller than 0.05, suggesting that the measurement variations were caused by both methods and observers along with the different cadaver specimens used. Further, the 3D scanner measurements were closer to the gold standard measurements when compared to the CBCT measurements. Conclusion: In the assessment of artificially created maxillary defects, the 3D scanner measurements were more accurate than the CBCT measurements.