• Asian Pacific Journal of Cancer Prevention
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• 제14권12호
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• pp.7355-7358
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• 2013

Several lines of evidence support the notion that MUC1 is often aberrantly expressed in gastric cancer, and it is a ligand for Helicobacter pylori. Genetic variation in MUC1 gene may confer susceptibility to H. pylori infection and gastric cancer. We assessed the association of common polymorphisms in MUC1 gene with H. pylori infection and non-cardia gastric cancer using an LD-based tag SNP approach in north-western Chinese Han population. A total of four SNPs were successfully genotyped among 288 patients with non-cardia gastric cancer and 281 age- and sex-matched controls. None of the tested SNPs was associated with H. pylori infection. SNP rs9426886 was associated with a decreased risk of non-cardia gastric cancer, but lost significance after adjustment for multiple testing. Overall, our data indicated that common genetic variations in MUC1 gene might not make a major contribution to the risk of H. pylori infection and non-cardia gastric cancer in our studied population.

• The Korean Journal of Physiology and Pharmacology
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• 제25권2호
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• pp.111-118
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• 2021

27-Hydroxycholesterol (27OHChol) exhibits agonistic activity for liver X receptors (LXRs). To determine roles of the LXR agonistic activity in macrophage gene expression, we investigated the effects of LXR inhibition on the 27OHChol-induced genes. Treatment of human THP-1 cells with GSK 2033, a potent cell-active LXR antagonist, results in complete inhibition in the transcription of LXR target genes (such as LXRα and ABCA1) induced by 27OHChol or a synthetic LXR ligand TO 901317. Whereas expression of CCL2 and CCL4 remains unaffected by GSK 2033, TNF-α expression is further induced and 27OHChol-induced CCL3 and CXCL8 genes are suppressed at both the transcriptional and protein translation levels in the presence of GSK 2033. This LXR antagonist downregulates transcript levels and surface expression of CD163 and CD206 and suppresses the transcription of CD14, CD80, and CD86 genes without downregulating their surface levels. GSK 2033 alone had no effect on the basal expression levels of the aforementioned genes. Collectively, these results indicate that LXR inhibition leads to differential regulation of 27-hydroxycholesterol-induced genes in macrophages. We propose that 27OHChol induces gene expression and modulates macrophage functions via LXR-dependent and -independent mechanisms.

• Tuberculosis and Respiratory Diseases
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• 제41권2호
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• pp.87-96
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• 1994

연구배경 : 종양괴사인자(tumor necrosis factor ; TNF)는 여러 암세포에 대해서 세포독성을 보임이 알려져 있다. 그리고, 최근 분자생물학적 발전에 힘입어 TNF 유전자를 암세포에 이입하고 발현시키는 연구가 그 동안 진행되었다. 이들 연구의 목적은, TNF를 전신적으로 쓸 경우 전신 부작용이 심하여 인체에 쓸 수 없는 현 단계에서 암세포 자체에서 TNF를 만들어 내어서 암세포 주위에서만 작용하게 함으로써 연체에 미치는 전신독성을 최소한으로 줄이고 암세포를 사멸시키는 것이었다. 암세포에 TNF 유전자를 이입함으로써 예상되는 항암효과가 성공을 거두기 위해서는 첫째, TNF 유전자가 이입된 암세포에서 분비된 TNF가 주위 암세포를 성공적으로 사멸시켜야 하고 둘째는 분비된 TNF가, TNF 유전자가 이입된 암세포 자신을 사멸시켜야 한다. 본 연구는 이 중 두번째 기전, 즉 TNF 유전자가 이입된 암세포가 자신이 분비한 TNF에 의해서 사멸되거나 또는 세포 독성이 나타날 수 있는가를 검증하는데 목적을 두었다. 방법 : TNF에 감수성을 보이는 인체의 중피종 세포주인 NCI-H2058과 생쥐 섬유육종 세포주인 WEHI164에 TNF-$\alpha$ 유전자를 retroviral vector를 이용하여 이입하고 TNF를 발현을 시도하였다. DNA 수준과 단백질 수준에서 TNF-$\alpha$ 유전자가 제대로 이입되어 발현되는지 PCR과 ELISA 및 bioassay(MTT assay)로 확인하였다. 그리고, TNF 유전자가 이입된 세포주가 자신이 분비하는 TNF에 사멸되는지 아니면 생존하는지 MTT(dimethylthiazolyl diphenyltetrazolium) assay로 알아보았다. 그리고, 만일 TNF 유전자가 이입된 암세포가 자신이 분비한 TNF에 사멸되지 않고 생존할 경우, TNF 유전자가 이입된 NCI-H2058-TNF와 WEHI164-TNF 암세포주가 외부에서 준 TNF에도 내성을 보이는지도 추가로 MTT assay 방법으로 확인해 보았다. 결과 : 1) TNF-$\alpha$ 유전자 이입 및 발현 확인 PCR을 시행한 결과, TNF 유전자가 이입된 NCI-H2058-TNF와 WEHI164-TNF 세포주는 790 base pair 크기의 진한 DNA band를 보인 반면 각각의 모세포주에서는 보이지 않아서 retroviral vector를 이용한 유전자 이입이 DNA 수준에서 이루어졌음을 확인할 수 있었다. 그리고, NCI-H2058-TNF와 WEHI164-TNF의 상층 배양액의 TNF양을 ELISA와 bioassay(MTT assay)로 측정한 결과, 생물학적 활성을 지닌 TNF를 각각 $23.6{\pm}0.84ng$/24h/$10^6cells$, $12.2{\pm}0.36ng$/24h/$10^6cells$ 생산함을 알 수 있었다. 2) TNF 유전자 이입 전후, 암세포의 TNF에 대한 감수성 비교 TNF 유전자 이입 전후의 TNF에 대한 세포주의 감수성(세포사망율)을 TNF의 농도 변화에 따라 비교한 결과, NCI-H2058의 경우 TNF 농도 100ng/ml에서 모세포는 $25{\pm}3%$의 세포독성을 보인 반면 TNF 유전자 이입 후에는 $3{\pm}2%$의 세포독성을 보여 통계적으로 유의한 차이가 있었다(p<0.01). 그리고, WEHI-164의 경우도 TNF 농도 100ng/ml에서 모세포는 $73{\pm}5%$의 세포독성을 보인 반면 TNF 유전자 이입 후에는 $3{\pm}2%$의 세포독성을 보여 통계적으로 유의한 차이가 있었다(p<0.01). 결론 : TNF에 감수성을 보이는 암세포주인 NCI-H2058과 WEHI164에 TNF 유전자 이입을 시행하고 TNF가 발현되게 하였을 때, TNF 유전자를 이입받은 두 암세포주 모두에서 자신이 생산해 내는 TNF에 내성을 보여 생존하였다. 뿐만 아니라 생존한 이들 세포는 외부에서 준 TNF에 대해서도 내성을 보였다. 따라서, 암세포에 대한 TNF 유전자 이입을 통한 유전자 요법이 성공을 거두려면 유전자 이입된 세포에서 분비하는 TNF의 면역 세포 동원 방법 등의 간접적인 항암기전이 필요할 것으로 생각된다.

• 한국한의학연구원논문집
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• 제8권2호통권9호
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• pp.95-107
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• 2002

Yukmijihwang-tang(YM) is a noted herbal prescription in Chinese and Korean traditional medicines, and it has been known to reinforce the vital essence and has been widely used for a variety of disease such as stroke, osteoporosis, anti-tumor, and hypothyrodism. Regarding its traditional use, YM has been known to reinforce the Yin (vital essence) of liver and kidney. Also it has been known to reinforce nutrition and biological function in brain. Recently, studies suggested that YM increase antioxidant activities and exert the protective effect against oxidant-induced liver cell injury. We investigated the high-throughput gene expression analysis on the Yukmijihwang-tang administrated in SD rats. Microarray data were validated on a limited number of genes by semiquantitative RT-PCR and Western blot analyses. The recent availability of microarrays provides an attractive strategy for elaborating an unbiased molecular profile of large number of genes in drug discovery This experimental approach offers the potential to identify molecules or cellular pathways not previously associated with herbal medicine. Total RNA from normal control brain and Yukmijihwang-tang administrated brain were hybridized to microarrays containing 10,000 rat genes. The 52 genes were found to be up-regulated(twice or more) excluding EST gene. The nine genes were found to be down-regulated(twice or more) excluding EST gene. Gene array technology was used to identify for the first time many genes expression pathway analysis that arecell cycle pathway, apoptosis pathway, electron transport chain pathway, cytoplasmic ribosomal protein pathway, fatty acid degradation pathway, and TGF-beta signaling pathway. These differentially expressed genes pathway analysis have not previously been iavestigated in the context of herbal medicine efficacy and represent novel factors for further study of the mechanism of herbal medicine efficacy.

• Journal of Acupuncture Research
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• 제24권3호
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• pp.197-205
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• 2007

Objectives : Tumor necrosis factor-${\alpha}$(TNF ${\alpha}$) is a proinflammatory cytokine involved in the pathogenesis of rheumatoid arthritis. This study was designed to investigate the relation between TNF-${\alpha}$ gene polymorphism and rheumatoid arthritis in Korean population. Methods : This study was carried out on 103 rheumatoid arthritis patients who fulfilled the American College of Rheumatology 1987 revised criteria for rheumatoid arthritis and 208 healthy control subjects. Blood samples from all subjects were obtained for DNA extraction. The extracted DNA was amplified by polymerse chain reaction(PCR). PCR products were visualized by 2% agarose gel electrophoresis. We investigated the genotyping of TNF-${\alpha}$ by using Pyrosequencing. Results: The genotypes of TNF-${\alpha}$ gene were GG, AG and AA. While the distribution of TNF-${\alpha}$ polymorphism in control subjects was 92.31%, 7.21%, 0.48% respectively, in rheumatoid arthritis patients was 93.20%, 6.80%, 0.00%(GG, AG, AA). There was no statistical significant allelic frequency difference between control and rheumatoid arthritis groups. Conclusions : We concluded that there was no significant association between TNF-${\alpha}$ gene polymorphism and rheumatoid arthritis. However, the findings of this study need to be confirmed in more patients and further studies.

• 대한한방내과학회지
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• 제30권4호
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• pp.685-695
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• 2009

Objectives : In this study, the author tried to investigate whether Geonpye-tang(GPT) significantly affects PMA-, EGF- or TNF-alpha-induced MUC5AC mucin production and gene expression from human airway epithelial cells. Materials and Methods : Effects of the agent on PMA-, EGF- or TNF-alpha-induced MUC5AC mucin production and gene expression from human airway epithelial cells (NCI-H292) were investigated. Confluent NCI-H292 cells were pretreated for 30 min in the presence of GPT and treated with PMA (10ng/ml) or EGF (25ng/ml) or TNF-alpha (0.2nM), to assess both effect of the agent on PMA- or EGF- or TNF-alpha-induced MUC5AC mucin production by enzyme-linked immunosorbent assay (ELISA) and gene expression by reverse transcription-polymerase chain reaction (RT-PCR). Possible cytotoxicity of the agent was assessed by examining the rate of survival and proliferation of NCI-H292 cells after treatment with the agent over 72 hrs (SRB assay). Results : (1) GPT significantly inhibited PMA-induced and EGF-induced MUC5AC mucin production from NCI-H292 cells. However, GPT did not affect TNF-alpha-induced MUC5AC mucin production. (2) GPT significantly inhibited the expression levels of PMA-, EGF- or TNF-alpha-induced MUC5AC genes in NCI-H292 cells (3) GPT did not show significant cytotoxicity to NCI-H292 cells. Conclusion : This result suggests that GPT can affect the production and gene expression of respiratory mucin observed in diverse respiratory diseases accompanied by mucus hypersecretion. This can explain the traditional use of GPT in oriental medicine. Effects of GPT with their components should be further investigated using animal experimental models that reflect pathophysiology of airway diseases through future studies.

• Journal of Gastric Cancer
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• 제20권1호
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• pp.29-40
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• 2020

Purpose: Gastrointestinal stromal tumors (GISTs) frequently harbor activating gene mutations in either KIT or platelet-derived growth factor receptor A (PDGFRA) and are highly responsive to several selective tyrosine kinase inhibitors. In this study, a targeted next-generation sequencing (NGS) assay with an Oncomine Focus Assay (OFA) panel was used for the genetic characterization of molecular targets in 30 Korean patients with GIST. Materials and Methods: Using the OFA that enables rapid and simultaneous detection of hotspots, single nucleotide variants (SNVs), insertion and deletions (Indels), copy number variants (CNVs), and gene fusions across 52 genes relevant to solid tumors, targeted NGS was performed using genomic DNA extracted from formalin-fixed and paraffin-embedded samples of 30 GISTs. Results: Forty-three hotspot/other likely pathogenic variants (33 SNVs, 8 Indels, and 2 amplifications) in 16 genes were identified in 26 of the 30 GISTs. KIT variants were most frequent (44%, 19/43), followed by 6 variants in PIK3CA, 3 in PDGFRA, 2 each in JAK1 and EGFR, and 1 each in AKT1, ALK, CCND1, CTNNB1, FGFR3, FGFR4, GNA11, GNAQ, JAK3, MET, and SMO. Based on the mutation types, majority of the variants carried missense mutations (60%, 26/43), followed by 8 frameshifts, 6 nonsense, 1 stop-loss, and 2 amplifications. Conclusions: Our study confirmed the advantage of using targeted NGS with a cancer gene panel to efficiently identify mutations associated with GISTs. These findings may provide a molecular genetic basis for developing new drugs targeting these gene mutations for GIST therapy.

• Tuberculosis and Respiratory Diseases
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• 제64권6호
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• pp.466-470
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• 2008

저자들은 저자들은 폐색전증이 발생한 환자에서 기저질환을 조사하던 중 Factor VII 활성도 저하를 관찰하였고, 이 환자에게서 Factor VII 유전자의 프로모터 -401의 단염기 치환($G{\rightarrow}A$)을 발견하여 보고하며, 국내에도 Factor VII 유전자 다형성이 존재함을 밝히며, Factor VII 활성도 감소와 폐색전증이 동반된 환자를 보고하는 바이다.

• Parasites, Hosts and Diseases
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• 제52권2호
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• pp.197-199
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• 2014

Diphyllobothrium latum and Diphyllobothrium nihonkaiense are the 2 reported main causes of human diphyllobothriasis in the Republic of Korea. However, the differentiation of these 2 species based on morphologic features alone is difficult. The authors used nucleotide sequencing of the mitochondrial cytochrome c oxidase subunit 1 (cox1) gene to diagnose Diphyllobothrium spp. Two patients visited the emergency room at Kyungpook National University Hospital on 3 April and 12 April 2013, respectively, with fragments of parasites found while defecating. The parasites were identified as Diphyllobothrium spp. based on morphologic characteristics, and subsequent cox1 gene sequencing showed 99.9% similarity (1,478/1,480 bp) with D. nihonkaiense. Our findings support the hypothesis that D. nihonkaiense is a dominant species in Korea.

• 대한생식의학회:학술대회논문집
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• 대한불임학회 2004년도 제46차 춘계학술대회
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• pp.73-74
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• 2004