• Title/Summary/Keyword: Functional Connectivity

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The Protein-Protein Interaction Network of Hereditary Parkinsonism Genes Is a Hierarchical Scale-Free Network

  • Yun Joong Kim;Kiyong Kim;Heonwoo Lee;Junbeom Jeon;Jinwoo Lee;Jeehee Yoon
    • Yonsei Medical Journal
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    • v.63 no.8
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    • pp.724-734
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    • 2022
  • Purpose Hereditary parkinsonism genes consist of causative genes of familial Parkinson's disease (PD) with a locus symbol prefix (PARK genes) and hereditary atypical parkinsonian disorders that present atypical features and limited responsiveness to levodopa (non-PARK genes). Although studies have shown that hereditary parkinsonism genes are related to idiopathic PD at the phenotypic, gene expression, and genomic levels, no study has systematically investigated connectivity among the proteins encoded by these genes at the protein-protein interaction (PPI) level. Materials and Methods Topological measurements and physical interaction enrichment were performed to assess PPI networks constructed using some or all the proteins encoded by hereditary parkinsonism genes (n=96), which were curated using the Online Mendelian Inheritance in Man database and literature. Results Non-PARK and PARK genes were involved in common functional modules related to autophagy, mitochondrial or lysosomal organization, catecholamine metabolic process, chemical synapse transmission, response to oxidative stress, neuronal apoptosis, regulation of cellular protein catabolic process, and vesicle-mediated transport in synapse. The hereditary parkinsonism proteins formed a single large network comprising 51 nodes, 83 edges, and three PPI pairs. The probability of degree distribution followed a power-law scaling behavior, with a degree exponent of 1.24 and a correlation coefficient of 0.92. LRRK2 was identified as a hub gene with the highest degree of betweenness centrality; its physical interaction enrichment score was 1.28, which was highly significant. Conclusion Both PARK and non-PARK genes show high connectivity at the PPI and biological functional levels.

An optimal security management framework for backhaul-aware 5G- Vehicle to Everything (V2X)

  • Vishal Sharma;Jiyoon Kim;Yongho Ko;Ilsun You;Jung Taek Seo
    • Journal of Internet Technology
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    • v.21 no.1
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    • pp.249-264
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    • 2020
  • Cellular (C) setups facilitate the connectivity amongst the devices with better provisioning of services to its users. Vehicular networks are one of the representative setups that aim at expanding their functionalities by using the available cellular systems like Long Term Evolution (LTE)-based Evolved Universal Terrestrial Radio Access Network (E-UTRAN) as well as the upcoming Fifth Generation (5G)-based functional architecture. The vehicular networks include Vehicle to Vehicle (V2V), Vehicle to Infrastructure (V2I), Vehicle to Pedestrian (V2P) and Vehicle to Network (V2N), all of which are referred to as Vehicle to Everything (V2X). 5G has dominated the vehicular network and most of the upcoming research is motivated towards the fully functional utilization of 5G-V2X. Despite that, credential management and edge-initiated security are yet to be resolved under 5G-V2X. To further understand the issue, this paper presents security management as a principle of sustainability and key-management. The performance tradeoff is evaluated with the key-updates required to maintain a secure connection between the vehicles and the 5G-terminals. The proposed approach aims at the utilization of high-speed mmWave-based backhaul for enhancing the security operations between the core and the sub-divided functions at the edge of the network through a dual security management framework. The evaluations are conducted using numerical simulations, which help to understand the impact on the sustainability of connections as well as identification of the fail-safe points for secure and fast operations. Furthermore, the evaluations help to follow the multiple tradeoffs of security and performance based on the metrics like mandatory key updates, the range of operations and the probability of connectivity.

Connectivity Analysis Between EEG and EMG Signals by the Status of Movement Intention (운동 의도에 따른 뇌파-근전도 신호 간 연결성 분석)

  • Kim, Byeong-Nam;Kim, Yun-Hee;Kim, Laehyun;Kwon, Gyu-Hyun;Jang, Won-Seuk;Yoo, Sun-Kook
    • Science of Emotion and Sensibility
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    • v.19 no.1
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    • pp.31-38
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    • 2016
  • The brain and muscles both of which are composed of top-down structure occur the connectivity with the change of Electroencephalogram(EEG) and Electromyogram(EMG). In this paper, we studied the difference of functional connectivity between brain and muscles that by applying coherence method to EEG and EMG signals when users exercised upper limb with and without the movement intention. The changes in the EEG and EMG signals were inspected using coherence method. During the upper limb exercise, the mu (8~14 Hz) and beta (15~30 Hz) rhythms of the EEG signal at the motor cortex area are activated. And then the beta and piper (30~60 Hz) rhythms of the EMG signal are activated as well. The result of coherence analysis between EEG and EMG showed the coefficient of active exercise including movement intention is significantly higher than passive exercise. The coherence relations between cognitive response and muscle movement could interpret that the connectivity between the brain and muscle appear during active exercise with movement intention. The feature of coherence between brain and muscles by the status of movement intention will be useful in designing the rehabilitation system requiring feedback depending on the users' movement intention status.

A Selection Methodology of the Appropriate Candidate Sites of Riverine Wetlands for Ecological Connection (생태축 연결을 고려한 하천습지의 적정 후보지 선정 방안)

  • Yujin Kang;Won-joon Wang;Haneul Lee;Junhyeong, Lee;Seungmin Lee;Hung Soo Kim
    • Journal of Wetlands Research
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    • v.25 no.2
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    • pp.111-120
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    • 2023
  • In Korea, wetland policies are currently being pursued through long-term plans such as nationwide wetland surveys and wetland conservation basic plans. However, most policies focus on understanding the status of wetlands, such as their area, distribution, and biodiversity, and there is a lack of awareness regarding the need to conserve and manage wetland ecosystems as a single organism. Therefore, this study aims to identify potential riverine wetland sites that can be ecologically connected by considering functional aspects such as floodplain, biodiversity, habitat provision, and tourism resources. This study attempted to select a candidate site that could potentially provide ecological connectivity with three wetlands in the Nakdonggang River water system : Upo Wetland, Hwapocheon Wetland, and Junam Reservoir. 63 wetlands and 7 candidate sites located in 15 subwatersheds of the Nakdonggang River were analyzed, and the most suitable candidate site for ecological connectivity was selected based on the calculated scores. A suitability analysis was conducted using 9 evaluation factors to evaluate candidate sites, and the scoring method, using quantile, was applied to these factors. As a result, Upo2(Hopo) was selected as the most suitable site for ecological connectivity, receiving the highest score 36. Therefore, it is believed that Upo2(Hopo) can serve as a floodplain, habitat, biodiversity enhancer, and tourism resource while being the most suitable for ecological connectivity.

Determination of Emergency Evacuation Roads Considering Road Network Function and Connectivity (도로네트워크 기능 및 연결성을 고려한 긴급대피교통로 선정)

  • Noh, Yunseung;Do, Myungsik
    • The Journal of The Korea Institute of Intelligent Transport Systems
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    • v.13 no.6
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    • pp.34-42
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    • 2014
  • This study is a fundamental research to determine the emergency evacuation roads considering road network function and connectivity. First of all, the functional aspects of the road networks are analyzed in the target area, Sejong city, by using degree centrality(DC) and closeness centrality(CC) from GIS based database. Secondly, how network connectivity makes a change in user's travel pattern and travel time and how it affects the whole network are analyzed using TransCAD simulation program. Finally, after performing cluster analysis of index, first and second emergency evacuation roads are determined by judging the characteristics of clusters. The results of this research will be helpful for making a decision to diminish secondary damages when confronting unexpected disasters.

A Study on the Architectural Planning of Spatial Organization Elements & Aerial Composition of Public Health Center within Governments Complexes Town - Focused on case studies in Seoul Metropolis - (복합행정타운 내 보건소의 공간구성요소와 면적구성에 관한 건축계획적 연구 - 서울특별시 사례를 중심으로 -)

  • Byun, Yong-Jin;Park, Jae-Seung
    • Korean Institute of Interior Design Journal
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    • v.19 no.3
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    • pp.224-233
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    • 2010
  • As urban function has become diversified and complicated, multifunctional complex facilities to satisfy new functional desires are necessary. Since local autonomy started, many facilities previously run and managed by central administrative agencies are now under management of localities, and functionally, the necessity for governments complexes town to satisfy diverse taste of populace such as creating local community becomes imminent. Analyzing characteristics by space composition factor of the public health center, newly built as part of such governments complexes town and understanding required area of each part, this project is to be used as basic material for construction plan of public health center that is equipped with local characters while devising construction of the public health center in the governments complexes town. Research method is to analyze four public health center facilities located in governments complexes town sites built after 2007, among twenty five public health centers in Seoul, by spatial functions. Also, based on statistical documents of usage of public health center facilities, research over spatial compositional factors and area composition has been conducted. As a result, connectivity between local government building located inside the governments complexes town and public health center and that of spatial composition factor by part, area ratio by part and floor type of public health center are comprehended. Connectivity type of public health centers are divided into horizontal and vertical connectivity and it is found that spatial composition of public health center is compartmentalized into low level, mid level and high level, to make access by users easier. Level type is decided as radial, rotational and combined by hallway connecting facilities.

A Study of Vertical Circulation System in General Hospitals by Using Space Syntax (공간구문론을 이용한 종합병원 수직동선체계 연구)

  • Lee, Hyunjin;Park, Jaseung
    • Journal of The Korea Institute of Healthcare Architecture
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    • v.19 no.4
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    • pp.47-60
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    • 2013
  • Purpose: This study examines construction core plans for the users of vertical-typed general hospitals to effectivly use the flow line. Methods: The study sampled representative 9 hospitals, calculated the depth value through Convex Map of Space Syntax and Justified Graph according to the determination of form of construction cire, and analyzed its functional connectivity. Results: The analysis of the connectivity between operation core part and emergency part of core space with high importance in the hospitals showed that the types of hospital and hospital have the lowest depth value in the spatial phase diagram, where central treatment part and outpatient part are arranged well vertically. Elevators for patients at these hospitals are close to operation and emergency parts actually separated from the elevators for passengers. For shortening of flow line of patients and private movement environment, however, it is desirable to arrange the elevators for patients to be adjacent to the operation parts and to arrange the emergent patient entrances more effectively to separate them from the flow line of visitors and guardians. Implications: Consideration should be taken into account for the effective flow line design. This study hopefully may serve as a stepping stone for the standard design of horizontal/vertical flow line.

Brain Connectivity Analysis using 18F-FDG-PET and 11C-PIB-PET Images of Normal Aging and Mild Cognitive Impairment Participants (정상 노화군과 경도인지장애 환자군의 18F-FDG-PET과 11C-PIB-PET 영상을 이용한 뇌 연결망 분석)

  • Son, S.J.;Park, H.
    • Journal of Biomedical Engineering Research
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    • v.35 no.3
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    • pp.68-74
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    • 2014
  • Recent research on mild cognitive impairment (MCI) has shown that cognitive and memory decline in this disease is accompanied by disruptive changes in the brain functional network. However, there have been no graph-theoretical studies using $^{11}C$-PIB PET data of the Alzheimer's Disease or mild cognitive impairment. In this study, we acquired $^{18}F$-FDG PET and $^{11}C$-PIB PET images of twenty-four normal aging control participants and thirty individuals with MCI from ADNI (Alzheimer's Disease Neuroimaging Initiative) database. Brain networks were constructed by thresholding binary correlation matrices using graph theoretical approaches. Both normal control and MCI group showed small-world property in $^{11}C$-PIB PET images as well as $^{18}F$-FDG PET images. $^{11}C$-PIB PET images showed significant difference between NC (normal control) and MCI over large range of sparsity values. This result will enable us to further analyze the brain using established graph-theoretical approaches for $^{11}C$-PIB PET images.

Design of In-situ Self-diagnosable Smart Controller for Integrated Algae Monitoring System

  • Lee, Sung Hwa;Mariappan, Vinayagam;Won, Dong Chan;Shin, Jaekwon;Yang, Seungyoun
    • International Journal of Advanced Culture Technology
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    • v.5 no.1
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    • pp.64-69
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    • 2017
  • The rapid growth of algae occurs can induce the algae bloom when nutrients are supplied from anthropogenic sources such as fertilizer, animal waste or sewage in runoff the water currents or upwelling naturally. The algae blooms creates the human health problem in the environment as well as in the water resource managers including hypoxic dead zones and harmful toxins and pose challenges to water treatment systems. The algal blooms in the source water in water treatment systems affects the drinking water taste & odor while clogging or damaging filtration systems and putting a strain on the systems designed to remove algal toxins from the source water. This paper propose the emerging In-Situ self-diagnosable smart algae sensing device with wireless connectivity for smart remote monitoring and control. In this research, we developed the In-Site Algae diagnosable sensing device with wireless sensor network (WSN) connectivity with Optical Biological Sensor and environmental sensor to monitor the water treatment systems. The proposed system emulated in real-time on the water treatment plant and functional evaluation parameters are presented as part of the conceptual proof to the proposed research.

Brain Mapping: From Anatomics to Informatics

  • Sun, Woong
    • Applied Microscopy
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    • v.46 no.4
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    • pp.184-187
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    • 2016
  • Neuronal connectivity determines brain function. Therefore, understanding the full map of brain connectivity with functional annotations is one of the most desirable but challenging tasks in science. Current methods to achieve this goal are limited by the resolution of imaging tools and the field of view. Macroscale imaging tools (e.g., magnetic resonance imaging, diffusion tensor images, and positron emission tomography) are suitable for large-volume analysis, and the resolution of these methodologies is being improved by developing hardware and software systems. Microscale tools (e.g., serial electron microscopy and array tomography), on the other hand, are evolving to efficiently stack small volumes to expand the dimension of analysis. The advent of mesoscale tools (e.g., tissue clearing and single plane ilumination microscopy super-resolution imaging) has greatly contributed to filling in the gaps between macroscale and microscale data. To achieve anatomical maps with gene expression and neural connection tags as multimodal information hubs, much work on information analysis and processing is yet required. Once images are obtained, digitized, and cumulated, these large amounts of information should be analyzed with information processing tools. With this in mind, post-imaging processing with the aid of many advanced information processing tools (e.g., artificial intelligence-based image processing) is set to explode in the near future, and with that, anatomic problems will be transformed into informatics problems.