• Title/Summary/Keyword: Fingerprinting analysis

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DNA Fingerprinting in Poultry Breeding and Genetic Analysis (DNA 지문을 이용한 가금의 유전분석과 개량)

  • 여정수
    • Korean Journal of Poultry Science
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    • v.22 no.2
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    • pp.97-104
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    • 1995
  • Recently, DNA fingerprinting has been utilized as the most powerful tool for genetic analysis and improvement of poultry. This technique enables us to solve several problems of poultry breeding ; traits of low heritability, difficulty in keeping the performance records, measuring in late of life, and sex limited traits. Application of DNA fingerprinting is chiefly focused to individual and population identification, evolution force, quantitative trait marker, introgression of new gene, and prediction of heterosis. Thus, research work on DNA fingerprinting will he accelerated to analyze genetic components exactly and improve the performance of poultry.

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Performance Analysis of Fingerprinting Method for LTE Positioning according to W-KNN Correlation Techniques in Urban Area (도심지역 LTE 측위를 위한 Fingerprinting 기법의 W-KNN Correlation 기술에 따른 성능 분석)

  • Kwon, Jae-Uk;Cho, Seong Yun
    • The Journal of the Korea institute of electronic communication sciences
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    • v.16 no.6
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    • pp.1059-1068
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    • 2021
  • In urban areas, GPS(Global Positioning System)/GNSS(Global Navigation Satellite System) signals are blocked or distorted by structures such as buildings, which limits positioning. To compensate for this problem, in this paper, fingerprinting-based positioning using RSRP(: Reference Signal Received Power) information of LTE signals is performed. The W-KNN(Weighted - K Nearest Neighbors) technique, which is widely used in the positioning step of fingerprinting, yields different positioning performance results depending on the similarity distance calculation method and weighting method used in correlation. In this paper, the performance of the fingerprinting positioning according to the techniques used in correlation is comparatively analyzed experimentally.

Amplified Fragment Length Polymorphism Fingerprinting as a Tool to Study the Genetic Diversity of Staphylococcus aureus Isolated from Food Sources

  • Kim, Young-Sam;Kim, Jong-Bae
    • Biomedical Science Letters
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    • v.8 no.1
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    • pp.39-46
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    • 2002
  • Amplified fragment length polymorphism (AFLP) is a recently developed PCR-based high resolution fingerprinting method that is able to generate complex banding patterns which can be used to delineate intraspecific genetic relationships among bacteria. In this study, we have modified and evaluated a PCR-based technique, amplified fragment length polymorphism (AFLP) analysis, for use in fingerprinting strains of Staphylococcus aureus. Single-enzyme amplified fragment length polymorphism (SE-AFLP) analysis was used to perform strain identification of Staphylococus aureus. By careful selection of AFLP primers, it was possible to obtain reproducible and sensitive identification to strain level. AFLP fingerprinting of 5 reference strains of Staphylococcus aureus and 65 strains of Staphylococcus aureus that were isolated from food sources of different area and diverse genomic types of Staphylococcus aureus were recognized. As a result of this study, we found that the AFLP patterns of Staphylococcus aureus isolated from Seoul, Taejeon and Gwang-Ju indicated the close relation with genetic similarity. The main purpose of this study was to find an alternative and reliable fingerprinting method to study the overall genetic diversity, using Staphylococcus aureus species as an example, and observed if the method can be successfully applied to all staphylococcal species.

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Measurements and Analysis of Fingerprinting Structures for WLAN Localization Systems

  • Al KhanbashI, Nuha;Al Sindi, Nayef;Ali, Nazar;Al-Araji, Saleh
    • ETRI Journal
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    • v.38 no.4
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    • pp.634-644
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    • 2016
  • Channel-based radio-frequency fingerprinting such as a channel impulse response (CIR), channel transfer function (CTF), and frequency coherence function (FCF) have been recently proposed to improve the accuracy at the physical layer; however, their empirical performance, advantages, and limitations have not been well reported. This paper provides a comprehensive empirical performance evaluation of RF location fingerprinting, focusing on a comparison of received-signal strength, CIR-, CTF-, and FCF-based fingerprinting using the weighted k-nearest neighbor pattern recognition technique. Frequency domain channel measurements in the IEEE 802.11 band taken on a university campus were used to evaluate the accuracy of the fingerprinting types and their robustness to human-induced motion perturbations of the channel. The localization performance was analyzed, and the results are described using the spatial and temporal radio propagation characteristics. In particular, we introduce the coherence region to explain the spatial properties and investigate the impact of the Doppler spread in time-varying channels on the time coherence of RF fingerprint structures.

Diversity and Genotypic Structure of ECOR Collection Determined by Repetitive Extragenic Palindromic PCR Genome Fingerprinting

  • HWANG KEUM-OK;JANG HYO-MI;CHO JAE-CHANG
    • Journal of Microbiology and Biotechnology
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    • v.15 no.3
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    • pp.672-677
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    • 2005
  • The standard reference collection of strains for E. coli, the ECOR collection, was analyzed by a genome-based typing method. Seventy-one ECOR strains were subjected to repetitive extragenic palindromic PCR genome fingerprinting with BOX primers (BOX-PCR). Using a similarity value of 0.8 or more after cluster analysis of BOX-PCR fingerprinting patterns to define the same genotypes, we identified 28 genotypes in the ECOR collection. Shannon's entropy-based diversity index was 3.07, and the incident-based coverage estimator indicated potentially 420 genotypes among E. coli populations. Chi-square test of goodness-of-fit showed statistically significant association between the genotypes defined by BOX-PCR fingerprinting and the groups previously defined by multi-locus enzyme electrophoresis. This study suggests that the diversification of E. coli strains in natural populations is actively ongoing, and rep-PCR fingerprinting is a convenient and reliable method to type E. coli strains for the purposes ranging from ecology to quarantine.ine.

Improved Algorithms for the Identification of Yeast Proteins and Significant Transcription Factor and Motif Analysis

  • Lee Seung-Won;Hong Seong-Eui;Lee Kyoo-Yeol;Choi Do-Il;Chung Hae-Young;Hur Cheol-Goo
    • Genomics & Informatics
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    • v.4 no.2
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    • pp.87-93
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    • 2006
  • With the rapid development of MS technologiesy, the demands for a more sophisticated MS interpretation algorithm haves grown as well. We have developed a new protein fingerprinting method using a binomial distribution, (fBIND). With the fBIND, we improved the performance accuracy of protein fingerprinting up to the maximum 49% (more than MOWSE) and 2% than(at a previous binomial distribution approach studied by of Wool et al.) as compared to the established algorithms. Moreover, we also suggest a the statistical approach to define the significance of transcription factors and motifs in the identified proteins based on the Gene Ontology (GO). Abbreviations: fBIND, fingerprinting using binomial distribution; GO, Gene Ontology; MS, Mass Spectrometry; PMF, peptide mass fingerprinting; nr, nonredundant; SGD, Saccharomyces Genome Database

Analysis of RSSI Character for Efficient Fingerprinting Map Design (효율적인 fingerprinting map 구축을 위한 RSSI 특성 분석)

  • Han, Byung-hun;Jeon, Min-ho;Oh, Chang-heon
    • Proceedings of the Korean Institute of Information and Commucation Sciences Conference
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    • 2014.05a
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    • pp.861-863
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    • 2014
  • Fingerprinting technique exists at the position assumption system for the service of indoor location-based. However, there is a problem it takes a long time to build fingerprinting map. We need to verify that received signal of WAP(wireless access point) is similar at all times in a similar space in order to solve these problems. This paper proposes a plan that is able to build fingerprinting map by using the received signal data of WAP. To do this, change the positon of WAP in the same space, It is confirmed the process of change of the RSSI corresponding to the distance. We also confirmed that the RSSI collected from elsewhere in the space a similar change in the same manner.

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Performance Analysis of Fingerprinting algorithms for Indoor Positioning (옥내 측위를 위한 지문 방식 알고리즘들의 성능 분석)

  • Yim, Jae-Geol
    • Journal of the Institute of Electronics Engineers of Korea CI
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    • v.43 no.6 s.312
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    • pp.1-9
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    • 2006
  • For the indoor positioning, wireless fingerprinting is most favorable because fingerprinting is most accurate among the techniques for wireless network based indoor positioning which does not require any special equipments dedicated for positioning. The deployment of a fingerprinting method consists of off-line phase and on-line phase. Off-line phase is not a time critical procedure, but on-line phase is indeed a time-critical procedure. If it is too slow then the user's location can be changed while it is calculating and the positioning method would never be accurate. Even so there is no research of improving efficiency of on-line phase of wireless fingerprinting. This paper proposes a decision-tree method for wireless fingerprinting and performs comparative analysis of the fingerprinting techniques including K-NN, Bayesian and our decision-tree.

Application of Wavelet-Based RF Fingerprinting to Enhance Wireless Network Security

  • Klein, Randall W.;Temple, Michael A.;Mendenhall, Michael J.
    • Journal of Communications and Networks
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    • v.11 no.6
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    • pp.544-555
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    • 2009
  • This work continues a trend of developments aimed at exploiting the physical layer of the open systems interconnection (OSI) model to enhance wireless network security. The goal is to augment activity occurring across other OSI layers and provide improved safeguards against unauthorized access. Relative to intrusion detection and anti-spoofing, this paper provides details for a proof-of-concept investigation involving "air monitor" applications where physical equipment constraints are not overly restrictive. In this case, RF fingerprinting is emerging as a viable security measure for providing device-specific identification (manufacturer, model, and/or serial number). RF fingerprint features can be extracted from various regions of collected bursts, the detection of which has been extensively researched. Given reliable burst detection, the near-term challenge is to find robust fingerprint features to improve device distinguishability. This is addressed here using wavelet domain (WD) RF fingerprinting based on dual-tree complex wavelet transform (DT-$\mathbb{C}WT$) features extracted from the non-transient preamble response of OFDM-based 802.11a signals. Intra-manufacturer classification performance is evaluated using four like-model Cisco devices with dissimilar serial numbers. WD fingerprinting effectiveness is demonstrated using Fisher-based multiple discriminant analysis (MDA) with maximum likelihood (ML) classification. The effects of varying channel SNR, burst detection error and dissimilar SNRs for MDA/ML training and classification are considered. Relative to time domain (TD) RF fingerprinting, WD fingerprinting with DT-$\mathbb{C}WT$ features emerged as the superior alternative for all scenarios at SNRs below 20 dB while achieving performance gains of up to 8 dB at 80% classification accuracy.

Comparative Identification of Oil Spills by Gas Chromatography Fingerprinting (海上 流出油 識別法에 關한 硏究)

  • 김영희
    • 한국해양학회지
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    • v.21 no.2
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    • pp.118-123
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    • 1986
  • A gas chromatographic oil fingerprinting method is a technique used for comparative source identification of spilled oil. The hydrocarbon and sulfur compound analysis by gas chromatography are generally used for analyzing oils. However, due to the complexity of oils, another technique is also needed for comparative identification. In this study, polycyclic aromatic hydrocarbons contained in crude oil and heavy fuel oil are analyzed by gas chromatography. They are relatively unaffected by weathering condition because they are stable. The oil fingerprinting of polycyclic aromatic hydrocarbons by GC seems to be a reliable technique for analyzing oils in identification of sources and kinds of oils.

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