• Title/Summary/Keyword: EmbB

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Implication of embB Gene Mutation in Ethambutol-Susceptible Clinical Isolates of Mycobacterium tuberculosis (임상에서 분리된 에탐부톨 감수성균에서의 embB 유전자 돌연변이에 대한 고찰)

  • Park, Young Kil;Shin, Sonya;Kim, Sang Jae;Koh, Won-Jung;Kwon, O Jung;Kim, Bum Jun;Kook, Yoon Ho;Cho, Sang Nae;Lew, Woo Jin;Bai, Gill Han
    • Tuberculosis and Respiratory Diseases
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    • v.59 no.3
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    • pp.266-271
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    • 2005
  • Background : Ethambutol(EMB) is one of the first-line drugs included in short-course anti-tuberculosis therapy. The point mutations in embB gene have been speculated to be associated EMB resistance. However, detection of embB mutations at these positions have been observed in both EMB-susceptible isolates; thus, it remains controversial whether these mutations are associated with EMB resistance Methods : The 36 M. tuberculosis isolates were selected from clinical isolates which tested susceptible to EMB and resistant to at least one drug. DNA extracted from the isolates was analyzed by amplifying embB gene. The PCR products were purified and directly sequenced. We reviewed the history of past drug susceptibility test results. Results : Out of 36 EMB-susceptible strains, 3 strains (8.3%) had a mutation in codon 306 or 406 of the embB gene. These three strains had at least isoniazid resistance. They grew at 1.0 mcg/ml of EMB in Lowenstein-Jensen media. The patients of the strains were continuously smear-positive for over 3 years despite taking TB therapy. One strain had been EMB-resistant in past drug susceptibility tests. Conclusion : EMB-susceptible strains containing embB mutation may be caused by decreased viability in vitro test not by itself.

Detection of embB Gene Mutation of Mycobacterium tuberculosis by Reverse Hybridization Assay (역교잡 방법을 이용한 결핵균 embB 유전자 돌연변이 검출)

  • Park, Young Kil;Yu, Hee Kyung;Park, Chan Hong;Ryu, Sung Weon;Lee, Seung Heon;Shim, Myung Sup;Lew, Woo Jin;Koh, Won-Jung;Kwon, O Jung;Cho, Sang Nae;Bai, Gill Han
    • Tuberculosis and Respiratory Diseases
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    • v.58 no.2
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    • pp.129-134
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    • 2005
  • Background : Ethambutol (EMB) is one of important first-line drug in the treatment of tuberculosis. Molecular techniques to detect embB gene mutations have been considered as an method to define the EMB resistance. We investigated the mutation rate within embB gene among EMB resistant strains using reverse hybridization techniques. Methods : We made 11 probes that had wild or mutated sequences containing codons 306, 406, or 497 within embB gene respectively. These probes were reverse-hybridized with PCR products amplified from embB gene which were isolated from 149 ethambutol resistant strains and 50 pan-susceptible strains. Results : Out of 149 ethambutol resistant strains, one hundred (67.1%) had mutation at least one base at codon 306, 406, or 497 in embB gene. Mutation at codon 306, 406, 497 were demonstrated in 75 (50.3%), 16 (10.7%), and 13 strains (8.7%) respectively. There were four strains that showed multi-mutation at codon 306 and codon 406 simultaneously. A high proportion (8.1%) had single mutation at codon 406. There was no mutation observed in embB gene among 50 pan-susceptible strains. Conclusion : Reverse hybridization will be useful technique for detection of gene mutation correlated to ethambutol resistance.

Structural dynamics insights into the M306L, M306V, and D1024N mutations in Mycobacterium tuberculosis inducing resistance to ethambutol

  • Yustinus Maladan;Dodi Safari;Arli Aditya Parikesit
    • Genomics & Informatics
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    • v.21 no.3
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    • pp.32.1-32.11
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    • 2023
  • Resistance to anti-tuberculosis drugs, especially ethambutol (EMB), has been widely reported worldwide. EMB resistance is caused by mutations in the embB gene, which encodes the arabinosyl transferase enzyme. This study aimed to detect mutations in the embB gene of Mycobacterium tuberculosis from Papua and to evaluate their impact on the effectiveness of EMB. We analyzed 20 samples of M. tuberculosis culture that had undergone whole-genome sequencing, of which 19 samples were of sufficient quality for further bioinformatics analysis. Mutation analysis was performed using TBProfiler, which identified M306L, M306V, D1024N, and E378A mutations. In sample TB035, the M306L mutation was present along with E378A. The binding affinity of EMB to arabinosyl transferase was calculated using AutoDock Vina. The molecular docking results revealed that all mutants demonstrated an increased binding affinity to EMB compared to the native protein (-0.948 kcal/mol). The presence of the M306L mutation, when coexisting with E378A, resulted in a slight increase in binding affinity compared to the M306L mutation alone. The molecular dynamics simulation results indicated that the M306L, M306L + E378A, M306V, and E378A mutants decreased protein stability. Conversely, the D1024N mutant exhibited stability comparable to the native protein. In conclusion, this study suggests that the M306L, M306L + E378A, M306V, and E378A mutations may contribute to EMB resistance, while the D1024N mutation may be consistent with continued susceptibility to EMB.

Comparison of Slotted and Slotless Ring-wound PM Brushless Machines for Electro-Mechanical Battery (EMB용 전동발전기 선정을 위한 슬롯형과 슬롯리스 Ring-wound형 영구자석 브러시리스 기기의 특성 비교)

  • Jang, Seok-Myeong;Jeong, Sang-Sub;Ryu, Dong-Wan;Choi, Sang-Kyu
    • The Transactions of the Korean Institute of Electrical Engineers B
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    • v.50 no.3
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    • pp.107-114
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    • 2001
  • Electro-mechanical battery (EMB) consists of a high-speed fly wheel with an integral motor/ generator suspended on magnetic bearings and in an evacuated housing. Permanent magnet (PM) machines as the EMB motor/ generator are a popular choice, since there are no excitation losses which means substantial increase in the efficiency. In this paper we present the comparison of conventional slotted and slotless ring-wound types, aimed at EMB and other high-speed drives. We firstly discuss the topology of each machine for this particular application. these machines are primarily designed as 1kW two-pole PM generator with the rated speed of 40000 rpm. the motoring torque of 0.51 Nm has to be enough to accelerate the flywheel to the rated speed. We then present the comparison of the open-circuit field, the armature reaction field and winding inductance. next we analyze the induced voltage and the developed torque per unit stack length and unit weight of different machines. Finally, we estimate and compare the losses and the efficiency at motoring and generating modes.

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Design, Manufacture and Performance Characteristics under Each Mode of High-Speed Motor/Generator for Electro-Mechanical Battery System (전기기계식 배터리 시스템용 초고속 전동발전기의 설계, 제작 및 모드별 특성)

  • Jang, Seok-Myeong;Seo, Jin-Ho;Jeong, Sang-Seop;Choe, Sang-Gyu;Ham, Sang-Yong
    • The Transactions of the Korean Institute of Electrical Engineers B
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    • v.48 no.8
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    • pp.400-407
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    • 1999
  • This paper treated the design, manufacture and the performance characteristics under each mode of high speed motor/generator for an electro-mechanical battery(EMB). This machine is employed as an integral part of a flywheel energy storage system(FESS), i.e., a modular flywheel system to be used as a device for storing electrical or mechanical energy. In this machine, the magnetic field system is constructed by using special magnet array, dipole Halbach array with 16 permanent magnet segments and the armature is composed of a plastic bobbin and multi-phase windings with Litz wire. The magnet array produces a highly uniform dipole field without back iron. The motor/generator is 3-phase machine in which the dipole Halbach array surrounding the winding is rotating. Since there are no iron laminations, this field system offers some unique advantages for the simplicity of the design and the theoretical prediction of characteristics of a high speed electric machine. This paper describes the results obtained when EMB system was tested in the laboratory.

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Adaptive Combination of Intra/Inter Predictions in JM KTA Software (JM KTA 소프트웨어에서 인트라 및 인터 예측블록이 혼합된 코딩 방법)

  • Kim, Min-Jae;Seo, Chan-Won;Jang, Myung-Hun;Han, Jong-Ki
    • Journal of Broadcast Engineering
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    • v.16 no.2
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    • pp.190-206
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    • 2011
  • We propose an adaptive combination scheme of intra and inter prediction modes, where uni-directional intra prediction, bi-directional intra prediction, and inter prediction method are adaptively selected in an EMB (extended macro block). For each EMB, after all inter blocks have been encoded and decoded, the reconstructed blocks are used as reference data for bi-directional intra prediction of other blocks. Whereas conventional intra coding scheme does not use the right and below side pixels of the current block as reference data, the proposed method uses those for bi-directional intra prediction mode. In this paper, we propose three advanced techniques; (a) filter design for bi-directional prediction, (b) adaptive coding order scheme which increases the chance to use the bi-directional intra prediction mode, (c) modification of syntax to represent coding order. The information for the coding order is informed to the decoder by using the modified syntax structure without adding any additional flag. The simulation results show that the proposed scheme reduces the BD-Rate by 0.5%, on average, compared to KTA.

Packaging and Storage of kimchi with Polyethylene Film Contained Raw Ore (생광석 함유 폴리에틸렌 필름을 사용한 김치의 포장저장)

  • 김순동;김미향;김미경
    • Food Science and Preservation
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    • v.5 no.4
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    • pp.355-362
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    • 1998
  • Polyethylene films contained 0, 10, 20, 30 and 40% of raw-ore powder(PERO) were prepared. The characteristics feature of the film and the powder were investigated in order to use packaging material for kimchi quality. Kimchi was packaged in the PERO bass md stored at 10$^{\circ}C$. The kimchi was examined for a pH, acidity, number of total microbe and lactic acid bacteria, E. coli, color values and sensory evaluation. The ore powder at 20$^{\circ}C$ produced infrared rays at 800-1100nm. The growth of E. coli md Staphylococcus aureus was extremely inhibited in the EMB and nutrient broth containing 10% of raw-ore powder but, that of lactobacillus plantarum and Leuconostoc mesenteriodes was slightly promoted in MRS broth containing 1%. The ripening by pH and acidity was slightly accelerated in kimchi in PERO bag(PERO-kimchi) compared to control kimchi but the maintenance of ripened-kimchi taste was prolonged in PERO-kimchi. The number of lactic acid bacteria of PERO-kimchi was more numerous than that of contol sample but that of E. coli wag exremely legs. The color L* values of PERO-kimchi was lower than control but a* and b* values were higher. Sensory evaluation of PERO-kimchi was higher score than control sample in crispness and overall taste about 10 to 20% of raw-ore contents for kimchi-packaging material was desirable.

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Status of Water Quality and Future Plans in the Philippines (필리핀의 수질현황 및 미래 관리계획)

  • Gorme, Joan B.;Maniquiz, Marla C.;Kim, Lee-Hyung
    • Journal of Wetlands Research
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    • v.11 no.3
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    • pp.89-103
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    • 2009
  • The Philippines is abundant with rich natural resources such as water. Because of rapid urbanization in the country, most of the water bodies are polluted as a result of domestic, agricultural and industrial activities. The Environmental Management Bureau (EMB) is the main government arm responsible for monitoring and inspection of affected water bodies. Only water bodies with at least four sampling events during dry and wet seasons were included in the assessment of water bodies that passed the DAO 90-34 water quality criteria. Water bodies were monitored for dissolved oxygen (DO), biochemical oxygen demand (BOD), total suspended solids (TSS), and total dissolved solids (TDS), heavy metals, fecal coliform contamination and nitrates. High pollutant concentrations from domestic, agricultural, industrial and nonpoint sources were observed from monitoring events due to inadequate sewage services and treatment facilities in the country. The objective of this paper was to present and evaluate the quality of the water bodies in the Philippines.

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Effect of Thiol Compounds on the Blastocyst Formation of In Vitro Matured and Fertilized Bovine Embryos (체외에서 성숙되고 수정된 소 난자의 배반포 형성에 있어 항산화제의 역할)

  • 정미용;도정태;엄진희;엄상준;김남형;이훈택;정길생
    • Korean Journal of Animal Reproduction
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    • v.22 no.3
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    • pp.293-300
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    • 1998
  • The objective of this study was to determine effects of $\beta$-mercaptoethanol ($\beta$-ME) and cyst-eine (CYS) on the development of bovine em-bryos obtained from in vitro matured and fertil-ized oocytes. Cumulus-oocyte-complexes (COC-s) were matured in micro-drop of TCM-199 medium containing 10% FBS, 17$\beta$-Estradiol and FSH-p under paraffin oil at 39$^{\circ}C$ for 24 hrs. The fertilization of COC were induced in Fert-TALP medium supplemented with PHE, heparin, BSA and then the fertilized oocytes were cultured in CR1aa medium for 24 hrs. To investigate the effects of the agents on the development of the embryos, the embryos developed to the late 2-cell stage were cultured in the media with and without $\beta$-ME, CYS for 9 days. In experiment 1, to select appropriate concentration of $\beta$-ME and CYS during whole culture period (9 days), various concentrations of $\beta$-ME and CYS were add ded to the CR1aa medium. Addition of 25TEX>$\mu$M of $\beta$-ME and O.1mM of CYS to the culture medium 1 increase the incidence of embryos developed to the blastocyst. In experiment 2, we evaluated the effects of 25$\mu$M of $\beta$-ME and O.1mM of CYS addition on the blastocyst formation when emb bryos at different stages were exposed to 25$\mu$M $\beta$-ME and O.1mM of CYS. $\beta$-ME and CYS enhanced in vitro development of embryos to the blastocyst stage. The effect was greater in 8-ceII to morula embryos than in embryos fewer than 2-cells at the initiation of treatment. These results suggested that the addition of 25$\mu$M B-ME and O.1mM cysteine enhanced development to the blastocyst and hatching stage of in vitro derived bovine embryos, also addition of $\beta$-ME and cysteine were effective later stage embryo than early embryo development.

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