• Journal of Microbiology and Biotechnology
• /
• v.34 no.4
• /
• pp.863-870
• /
• 2024

Meju, a fermented soybean brick, is a key component in soybean foods like doenjang and ganjang, harboring a variety of microorganisms, including bacteria and fungi. These microorganisms significantly contribute to the nutritional and sensory characteristics of doenjang and ganjang. Amplicon-based next-generation sequencing was applied to investigate how the microbial communities of meju fermented at low and high temperatures differ and how this variation affects the microbial communities of doenjang, a subsequently fermented soybean food. Our metagenomic data showed distinct patterns depending on the fermentation temperature. The microbial abundance in the bacterial community was increased under both temperatures during the fermentation of meju and doenjang. Weissella was the most abundant genus before the fermentation of meju, however, it was replaced by Bacillus at high temperature-fermented meju and lactic acid bacteria such as Weissella and Latilactobacillus at low temperature-fermented meju. Leuconostoc, Logiolactobacillus, and Tetragenococcus gradually took over the dominant role during the fermentation process of doenjang, replacing the previous dominant microorganisms. Mucor was dominant in the fungal community before and after meju fermentation, whereas Debaryomyces was dominant under both temperatures during doenjang fermentation. The dominant fungal genus of doenjang was not affected regardless of the fermentation temperature of meju. Strong correlations were shown for specific bacteria and fungi linked to specific fermentation temperatures. This study helps our understanding of meju fermentation process at different fermentation temperatures and highlights different bacteria and fungi associated with specific fermentation periods which may influence the nutritional and organoleptic properties of the final fermented soybean foods doenjang.

• Journal of Korean Society of Environmental Engineers
• /
• v.28 no.10
• /
• pp.1024-1030
• /
• 2006

Genus Nitrospira and Nitrobacter species are the key nitrite-oxidizing bacteria(NOB) in nitrifying wastewater treatment plants. It has been hypothesized that genus Nitrospira are K-strategists(low $K_6$ value) that can exploit low amounts of nitrite more efficiently than Nitrobacter. In contrast, Nitrobacter species are r-strategists(high $V_{max}$) that can grow faster than Nitrospira. It has also been known that the availability of organic compounds and dissolved oxygen as well as nitrite affects the distribution of NOB. In this study, we determined the distribution and competition of NOB in wastewater nitrification systems where nitrite, organic compounds, and dissolved oxygen concentrations were compositively varied. For the purpose, several compounds of the laboratory-scale nitrificaiion bioreactor and full-scale $A_2O$ wastewater treatment plant and their distribution of NOB were analyzed and compared. The analysis showed that Nitrobacter was the dominant NOB in nitrification bioreactor where average nitrite was maintained at 5 mg-N/L with very low organic concentration in aerobic condition, whereas Nitrospira was the dominant NOB in full-scale $A_2O$ plant where nitrite was maintained very low and organic compounds were maintained relatively high in alternating aerobic-anoxic condition. The result indicates that nitrite concentration is more critical factor than organics and dissolved oxygen which determines the dominant NOB in nitrification system and it is confirmed that Nitrospira and Nitrobacter showed the characteristics of r-strategist and K-strategist, respectively.

• Journal of Environmental Science International
• /
• v.28 no.10
• /
• pp.899-905
• /
• 2019

Recently, an innovative method for wastewater treatment and nutrient removal was developed by combining the sequence batch reactor and membrane bioreactor to overcome pollution caused by shipboard sewage. This system is a modified form of the activated sludge process and involves repeated cycles of mixing and aeration. In the present study, the bacterial diversity and dominant microbial community in this wastewater treatment system were studied using the MACROGEN next generation sequencing technique. A high diversity of bacteria was observed in anaerobic and aerobic bioreactors, with approximately 486 species. Microbial diversity and the presence of beneficial species are crucial for an effective biological shipboard wastewater treatment system. The Arcobacter genus was dominant in the anaerobic tank, which mainly contained Arcobacter lanthieri (8.24%), followed by Acinetobacter jahnsonii (5.81%). However, the dominant bacterial species in the aerobic bioreactor were Terrimonas lutea (7.24%) and Rubrivivax gelatinosus (4.95%).

• Journal of the Korean Society of Food Science and Nutrition
• /
• v.42 no.7
• /
• pp.1109-1114
• /
• 2013

Microbial community analysis was performed on Tarak, a traditional Korean fermented milk product, by 16S rDNA cloning and pyrosequencing to obtain basic data for the standardization and systematization of the Tarak manufacturing process. Microbial analysis of the prokaryotic community revealed a slight difference in microbial abundance between Bontarak (n) and Tarak (n+1), but Firmicute was dominant at the phylum level. At the genus level, the Lactobacillus and Leuconostoc genera constituted over 90% of the population in Bontarak, but Lactococcus was the dominant genus in Tarak. Bontarak and Tarak showed further differences at the species level. Leuconostoc citreum was the dominant species in Bontarak, constituting 40% of the population. In eukaryotic community analysis, all samples were composed of Ascomycota at the phylum level. At the genus level, Saccharomyces was dominant in Bontarak (85% of the population), while Issatchenkia was dominant in Tarak (95% of the population). At the species level, Saccharomyces cerevisiae was detected at a relative abundance in Bontarak (82%), and Pichia kudriavzevii was the dominant species in Tarak, with a relative abundance of 95%. Sensory evaluation indicated that Tarak had a better appearance and texture than Bontarak. As sweetness was not significantly different between the two samples just slightly higher in Tarak, this was likely due to a significant decrease in sourness in Tarak. These results suggest that the microbial community used affects the quality of Tarak produced. Thus, a stable microbial community must be maintained for the production of Tarak with consistent quality.

• Journal of Ecology and Environment
• /
• v.36 no.4
• /
• pp.371-390
• /
• 2013

Remarkable diversity of diatom taxa occurs in intertidal sand-flats of the Nakdong River estuary, one of the most dynamic and productive ecosystem in Korea. Benthic diatoms were collected from the sandy sediments to clarify the taxonomic accounts and distribution of the old genus Navicula, i.e., the naviculoid flora. Total 92 taxa belonging to Navicula sensu stricto and 22 genera separated from Navicula sensu lato are reported with brief descriptions and micrographs, and many species remain unidentified. The genera are ranked by the number of diatom species: Navicula of 33 species and varieties, Fallacia of 17 species, Placoneis of five species, Fogedia and Parlibellus of four species, Austariella, Hippodonta and Petroneis of three species, Cosmioneis, Diadesmis, Luticola, Moreneis and Sellaphora of two species and variety, Berkeleya, Chamaepinnularia, Cocconeiopsis, Diademoides, Dickieia, Eolimna, Geissleria, Haslea, Lyrella and Mayamaea of one species. Through 32 samplings of the 12 areas, the important species were identified Navicula perminuta, N. gregaria, N. torneensis, Fallacia cunoniae, F. litoricola, F. subforcipata, F. tenera. The naviculoid diatoms constitute an average of 27% (range: minimum to maximum, 5-75%), of the benthic diatom assemblages. The diatom assemblages are characterized by the colonizing of a few dominant or frequent species and many occasional or rare species. The dominant species were observed to fluctuate with sampling site and time. Among the reported naviculoid diatoms, 46 taxa are newly reported in Korea.

• Mycobiology
• /
• v.35 no.1
• /
• pp.36-38
• /
• 2007

Stored rice was collected from rice processing complexes of National Agricultural Cooperative Federation of 11 regions in Korea to evaluate the occurrence of fungi and bacteria and to identify the predominant fungi and bacteria to the genus levels. Most rice samples generally produced the higher levels of fungi and bacteria than white rice. The occurrence of fungi and bacteria varied in various locations of Korea. Among fungi observed, Aspergillus spp. and Penicillium spp. were dominant in the samples and Aspergillus spp. were observed more frequently than Penicillium spp. Predominant bacteria from rice and white rice samples tentatively belonged to the Genus Bacillus, Pectobacterium, Pantoea, and Microbacterium according to BIOLOG and FAME analyses. The results of this study showed that rice in Korea was contaminated in a relatively high level by two dominant storage fungi such as Aspergillus spp. and Penicillium spp. In addition, occurrence of mycotoxins in rice by the fungi could be possible and thus it is necessary to control the storage fungi.

• Microbiology and Biotechnology Letters
• /
• v.23 no.1
• /
• pp.36-42
• /
• 1995

Actinomycetes occur in a wide range of environments and many more actinomycetes remain to be detected in the natural environment. In isolation stages, selection of the environment as a source of useful isolates is important. Two hundred and eighteen strains were isolated on Bennet's agar and 346 strains were on humic acid-vitamin agar from five each paddy field, field, forest, grass land, riverside soil samples. These isolates were identified to the genus level based on morphological and physiological characteristics. Among them, 386 strains were Streptomyces, 49 strain were Nocardia, 35 strains were Microbispora and Micromonospora each, 15 strains were Nocardiopsis, 13 strains were Actinomadura, 10 strains were Streptosporangium, and the others were isolated rarely. According to soil type, Nocardia, Micromonospora, Microbispora and Streptosporangium were dominant in paddy field, Microbispora Nocardia, Nocardioides and Micromonospora were dominant in field, Nocardia, Micromonospora, Microbispora and Actinomadura were dominant in grass land, Nocardia, Micromonospora and Microbispora were dominant in forest, Nocardia, Microbispora and Micromonospora were dominant in riverside. Generally, Nocardia, Micromonospora, Microbispora and Actinomadura were isolated in all kinds of soils, Streptosporangium were paddy field, Dactylosporangium were forest, Nocardiopsis were field, forest and riverside.

• Applied Biological Chemistry
• /
• v.49 no.3
• /
• pp.175-179
• /
• 2006

This study was carried out to investigate the change of rhizosphere microflora in paddy soils of long-term application of same fertilizer by single cropping. Treatments consisted of no fertilizer, NPK, PK, NK, NP and NPK + compost and the same fertilizer has been applied to the soil of each treatment for thirty five years. Any remarkable difference of the microbial population structure was not detected from the rhizosphere of Hwayeongbyeo and that of Hwasambyeo. However, slight difference of dominant microbial species in the rhizosphere was recognized between different fertilization practice. The bacterial population in the rhizosphere was steadily reduced over time after rice plant setting out, while actinomycetal population was increased over time. The increase of actinomycetal population was the highest in the NPK + compost treatment, suggesting the effect of organic matters in the change of actinomycetal population. As for the aerobic culturable bacterial diversity, Bacillus megaterium, B. mycoides, B. licheniformis and B. subtilis were dominants in genus Bacillus, and Streptomyces spororaveus, S. canus, S. tauricus and S. galbus in genus Streptomyces and genus Micromonospora was another dominant in actinomycetes.

• Food Science of Animal Resources
• /
• v.41 no.4
• /
• pp.701-714
• /
• 2021

In this study, the microbial community succession and the protein hydrolysis of donkey meat during refrigerated (4℃) storage were investigated. 16S rDNA sequencing method was used to analyze the bacteria community structure and succession in the level of genome. Meanwhile, the volatile base nitrogen (TVB-N) was measured to evaluate the degradation level of protein. After sorting out the sequencing results, 1,274,604 clean data were obtained, which were clustered into 2,064 into operational taxonomic units (OTUs), annotated to 32 phyla and 527 genus. With the prolonging of storage time, the composition of microorganism changed greatly. At the same time, the diversity and richness of microorganism decreased and then increased. During the whole storage period, Proteobacteria was the dominant phyla, and the Photobacterium, Pseudompnas, and Acinetobacter were the dominant genus. According to correlation analysis, it was found that the abundance of these dominant bacteria was significantly positively correlated with the variation of TVB-N. And Pseudomonas might play an important role in the production of TVB-N during refrigerated storage of donkey meat. The predicted metabolic pathways, based on PICRUSt analysis, indicated that amino metabolism in refrigerated donkey meat was the main metabolic pathways. This study provides insight into the process involved in refrigerated donkey meat spoilage, which provides a foundation for the development of antibacterial preservative for donkey meat.

• ALGAE
• /
• v.18 no.3
• /
• pp.207-215
• /
• 2003

Dynamics of phytoplankton communities were investigated at five stations in Youngsan River from December 1995 to November 1996. Phytoplankton were identified to the total of 466 taxa, which were composed of 136 genera, 438 species, 27 varieties and 1 forma. The standing crops ranged 1,163-50,765 cells ${\cdot}ml^{-1}$ during the investigation periods. The variation of classes was in order to Chrysophyceae - Bascillariophyceae - Chlorophyceae at St. 1 and was only Bacillariophyceae at the other stations. The dominant species were 12 taxa including Aulacoseira ambigua, A. garnulata, Cyclotella meneghiniana, C. pseudostelligera, Chlorella vulgaris, Dinobryon sertularia, Flagilaria elliptica, Monoraphidium contortum, Micractinium pusillum, Nitzschia palea, Scenedesmus grahneisii and Stephanodiscus hantzschii f. tenuis. The standing crops of dominant species ranged from 10.6% to 94.7%. The genus Dinobryon in Chrysophyceae was dominant species at St. 1 in December 1995, but not recorded in the other months. The dominant species were composed with the planktonic diatoms from winter to spring and were the tychoplanktonic and the benthic species at St. 2-5 from summer to fall. The relationships between total standing crops and water temperature, pH, $NH_4$, $NO_2$, $NO_3$ and $PO_4$ showed low positive or negative coefficients. Stephanodiscus hantzschii f. tenuis had low positive or negative coefficients with water temperature, $NH_4$, $NO_2$, $NO_3$ and $PO_4$. The fluctuations of standing crops in the Youngsan river phytoplankton community were not caused by a single factor but controlled by the complex factors with interaction between phytoplankton community and envirowmental factors.