• Geomechanics and Engineering
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• 제34권1호
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• pp.1-15
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• 2023

This study conducts uniaxial compression tests on intact and single crack-contained rocks to investigate the time-frequency domain characteristics of acoustic emission (AE) signals monitored during the deformation failure process. A processing approach, short-time Fourier transform (STFT), is performed to obtain the evolution characteristics of time-frequency domain of AE signals. The AE signal modes at different deformation stages of rocks are different. Five modes of AE signal are observed during the cracking process of rocks. The evolution characteristics of time-frequency domain of AE signals processed by STFT can be utilized to evaluate the damage process of rocks. The difference of time-frequency domain characteristics between intact and cracked rocks is comparatively analyzed. The distribution characteristics of frequency changing from a single band-shaped cluster to multiple band-shaped clusters can be regarded as an early warning information of damage and failure of rocks. Meanwhile, the attenuation of frequency enables the exploration of rock failure trends.

• 한국정보처리학회:학술대회논문집
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• 한국정보처리학회 2004년도 추계학술발표논문집(상)
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• pp.591-594
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• 2004

Existing methodologies and practical ontology development experiences have explored a broad spectrum of knowledge management challenges. Each has its own characteristics and evaluates only a subset of specific domain. However, there is still no one 'correct' way or methodology for developing ontologies. In this paper, we described a methodology for domain driven ontology development, covering the whole lifecycle from the formalization of domain to the evolution of ontologies.

• 한국전기전자재료학회논문지
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• 제30권9호
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• pp.546-550
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• 2017

Ferroelectric properties are governed by domain structures and domain wall motions, so it is of significance to understand domain evolution processes under mechanical stress. In the present study, in situ piezoresponse force microscopy (PFM) observation under compressive stress was carried out for a near-morphotropic PZT. Both $180^{\circ}$ and $non-180^{\circ}$ domain structures were observed from PFM images, and their habit planes were identified using electron backscatter diffraction in conjunction with PFM data. By externally applied mechanical stress, needle-like $non-180^{\circ}$ domain patterns were broadened via domain wall motions. This was interpreted via phenomenological approach such that the total energy minimization can be achieved by domain wall motion rather than domain nucleation mainly due to the local gradient energy. Meanwhile, no motion was observed from curvy $180^{\circ}$ domain walls under the mechanical stress, validating that $180^{\circ}$ domain walls are not directly influenced by mechanical stress.

• 한국정보과학회논문지:컴퓨팅의 실제 및 레터
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• 제15권5호
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• pp.375-379
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• 2009

도메인은 단백질의 진화와 삼차구조 및 분자 기능의 기본 단위체이다. 단백질은 한 개 이상의 도메인들로 구정 되며, 단백질의 기능 또한 각 도메인이 가진 기능의 집합으로 구현된다. 단백질은 특정 기능을 담당하기 위해 진화되어 왔으므로, 도메인 또한 단백질 내에서 기능을 위한 특정 조합 패턴, 즉 보존도메인 조합을 가진다. 본 논문은 각 도메인 조합의 진화상 보존 정도를 측정할 수 있는 연관성 규칙 기반 계산 기법을 제안한다. 제안된 기법은 기존 기법에서 주로 고려되었던 도메인 조합의 빈도뿐 아니라, 조합 내 소속 도메인간의 상호 의존도를 측정하여 주어진 조합의 보존 정도를 산출한다. 이를 기반으로 S.cerevisiae의 단백질을 대상으로 보존 도메인 조합을 추출하였으며, Gene Ontology를 이용하여 그 생물학적 의미를 분석하였다. 그 결과 제안된 기법으로 추출된 보존 도메인 조합은 기존의 것에 비해 조합 내 기능의 유사도가 높았으며, 따라서 제안된 기법이 생물학적 기능의 협업 위해 보존된 도메인 조합의 추출에 우수하다 할 것이다. 또한 S.cerevisiae 단백질체에는 서로 의존도가 높고 자주 나타나는 보존 도메인 조합이 존재하며, 그러한 조합들은 molecular function의 협업과 관련 있음을 밝혀냈다.

• Fisheries and Aquatic Sciences
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• 제20권6호
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• pp.8.1-8.18
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• 2017

Background: Metallothionein (MT) is a multifunctional protein playing important roles in homeostatic regulation and detoxification of metals. Mollusk species have been considered as useful sentinel platforms for MT-based biomarker approaches, and they have been reported to display an extraordinary structural diversity of MT proteins. However, potential diversity of molluskan MTs has not been fully explored and recent updates have suggested the need of revision of evolutionary hypothesis for molluskan MTs. Results: Based on bioinformatic analysis and phylogenetic evidences, novel divergence mechanisms and paths were hypothesized in both gastropod and bivalve MT groups. Our analyses are suggestive of the taxon- or lineage-specific domain multiplication/duplication from the ancestral or prototypic MT. Diversification and selection of molluskan MTs might be driven by the needs for acquiring metal selectiveness, specialized novel function, and improved capacity of metal detoxification under environmentally stressed conditions. Conclusion: The structural diversity and variations of molluskan MTs are significantly larger than previously understood. Undoubtedly, molluskan MTs have undergone dynamic divergent processes in their evolutionary histories, giving rise to the great diversity of domain structures in extant MT isoforms. Novel evolutionary paths for molluskan MTs newly proposed in this review could shed additional light onto the revision of the hypothesis for evolutionary differentiation of MTs in the molluskan lineage.

• Current Applied Physics
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• 제18권11호
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• pp.1185-1189
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• 2018

Thickness-dependent magnetic domain structure of ultrathin Co wedge films (0.3 nm-1.0 nm) sandwiched by Pt layers was investigated by scanning transmission x-ray microscopy (STXM) employing X-ray magnetic circular dichroism (XMCD), utilizing elliptically polarized soft x-rays and electromagnetic fields, with a spatial resolution of 50 nm. The magnetic domain images measured at the Co $L_3$ edge showed the evolution of the magnetic domain structures from maze-like form to the bubble-like form as the perpendicular magnetic field was applied. The asymmetric domain expansion of a 500 nm-scale bubble domain was also measured when the in-plane and perpendicular external magnetic field were applied simultaneously.

• Fisheries and Aquatic Sciences
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• 제1권2호
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• pp.227-231
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• 1998

The teleosts represent ancient real-bony vertebrates in phylogeny and resemble major genetic patterns to higher vertebrates. In the present study, we have defined the single family of insulin-like growth factors (IGFs) from flounder (Paralichthys olivaceus), compared to the prototype of IGFs observed in the Agnathan hagfish. In flounder, IGFs are clearly diverged into two major types including type I and II, and they are structurally similar by displaying a multidomain structure consisting of five functional regions as previously found in other vertebrates. However, flIGF-I appears to be more basic (pI 8.03) than the flIGF-II (pI 5.34) in the fully processed form for the B to D domain region. The flIGF-I seems to contain an evolutionary conserved Asn-linked glycosylation in E domain, which is not found in flIGF­II. The most interesting feature is that flIGF-II appeared to be structurally close to hagfish IGF in secondary structures, particularly in Band D domains. This could tell us an idea on the molecular divergence of IGFs from the Agnatha to teleosts during the vertebrate phylogeny. It also support, in part, a notion regarding on how IGF-II is appeared as more embryonic during development. Nonetheless, the biologically active B to D domain region of flIGF-II shows significant sequence homology of $65.6\%$ to flIGF-Is and contains the evolutionary conserved insulin-family signature, as well as a reserved recognition site (Lys) in D domain, necessary to generate proteolytic cleavage for E-peptide. A significant structural difference was found in E domain in which flIGF-I possesses two potential alternative splicing donor site at $Val^{17,\;24}$ of E domain. Therefore, it seems so far that IGF-I sorely produces spliced variants due to the spliced E-peptide moiety while IGF-II appears to be maintained in a single type during evolution. IGF-II, however, may be also possible to transcribe unidentified variants, depending on the physiological conditions of tissues in vertebrates in vivo.

• Genomics & Informatics
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• 제12권3호
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• pp.105-113
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• 2014

A subset of mammalian genes differ functionally between two alleles due to genomic imprinting, and seven such genes (Peg3, Usp29, APeg3, Zfp264, Zim1, Zim2, Zim3) are localized within the 500-kb genomic interval of the human and mouse genomes, constituting the Peg3 imprinted domain. This Peg3 domain shares several features with the other imprinted domains, including an evolutionarily conserved domain structure, along with transcriptional co-regulation through shared cis regulatory elements, as well as functional roles in controlling fetal growth rates and maternal-caring behaviors. The Peg3 domain also displays some unique features, including YY1-mediated regulation of transcription and imprinting; conversion and adaptation of several protein-coding members as ncRNA genes during evolution; and its close connection to human cancers through the potential tumor suppressor functions of Peg3 and Usp29. In this review, we summarize and discuss these features of the Peg3 domain.

• 한국자기학회:학술대회 개요집
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• 한국자기학회 2000년도 International Symposium on Magnetics The 2000 Fall Conference
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• pp.121-146
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• 2000

A novel system of magneto-optical microscope magnetometer (MOMM), capable of simultaneous local problems of magnetic properties as well as real-time magnetic domain evolution imaging of ferromagnetic thin films with 400-nm spatial resolution, New findings in domain reveral dynamics of Co-based multilayers: The reversal ratio of V/R is a governing physical parameter. The activation volumes of wall-motion and nucleation processes are generally unequal. Submicron-scale local coercivity variation determines domain reversal dynamics. A thermally activated relaxation process during domain reversal is existed on the submicron-scale in realistic films. Local variation of magnetic properties should be considered for a realistic simulation. The fantastic capabilities of the MOMM can open many possibilities to broaden and deepen our understanding of domain reversal phenomena in ferromagnetic thin films.

• Korea-Australia Rheology Journal
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• 제21권3호
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• pp.193-200
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• 2009

We present a direct simulation technique for two-dimensional mold-filling simulations of fluids filled with a large number of circular disk-like rigid particles. It is a direct simulation in that the hydrodynamic interaction between particles and fluid is fully considered. We employ a pseudo-concentration method for the evolution of the flow front and the DLM (distributed Lagrangian multipliers)-like fictitious domain method for the implicit treatment of the hydrodynamic interaction. Both methods allow the use of a fixed regular discretization during the entire computation. The discontinuous Galerkin method has been used to solve the concentration evolution equation and the rigid-ring description has been introduced for freely suspended particles. A buffer zone, the gate region of a finite area subject to the uniform velocity profile, has been introduced to put discrete particles into the computational domain avoiding any artificial discontinuity. From example problems of 450 particles, we investigated the particle motion and effects of particles on the flow for both Newtonian and shear-thinning fluid media. We report the prolonged particle movement toward the wall in case of a shear-thinning fluid, which has been interpreted with the shear rate distribution.