• 제목/요약/키워드: Domain Ontology

검색결과 268건 처리시간 0.024초

스마트시티를 위한 시맨틱 서비스 디스커버리 시스템 (A Semantic Service Discovery System for Smart-Cities)

  • 윤창호;박종원;정혜선;이용우
    • 정보처리학회논문지:컴퓨터 및 통신 시스템
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    • 제6권6호
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    • pp.281-288
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    • 2017
  • 스마트-시티에서는 다양한 종류의 정보들을 연계하여 서비스를 제공해야 한다. 따라서 서비스 간에는 유연성이 확보되어야 다양한 서비스를 효율적으로 제공할 수 있다. 서비스 간의 유연성이 확보되기 위해서, 스마트-시티에서는 실시간 상황인식을 통하여 인식된 상황을 반영하여, 시맨틱 서비스 검색을 함으로써, 동적으로 원하는 서비스를 발견하고 호출하는 기능이 매우 중요하다. 현재까지 꽤 많은 시맨틱 서비스 디스커버리 기법들이 개발되었다. 그런데, 이들은 스마트-시티라는 특정 도메인에 사용하기에 적절한지 검증이 되지 않았다. 본 연구에서는 기존의 것들을 일일이 다 검증하여 적합한 것을 사용하고자 하였다. 스마트-시티에서 우리와 같은 시도를 한 연구나 연구결과를 찾을 수 없어서, 일일이 검증을 하였으나, 우리의 스마트-시티 시스템을 위한 요구사항들을 만족시키기에는 매우 부족하거나 적절치 못했다. 그래서, 스마트-시티라는 우리의 사용영역에 맞는, 독자적인 시맨틱 서비스 디스커버리 기법들을 개발하지 않을 수 없었다. 본 논문은 이를 소개하고 성능평가 실험을 통하여 우리의 연구 개발시스템이 잘 작동하였으며, 우수한 성능을 보였음을 입증하는 결과와 이의 상세한 분석을 제시한다. 성능평가를 위하여, 실제로 실험시스템을 구축하고 성능을 측정하였다. 본 실험결과는 실제 스마트-시티를 구축하는데 매우 유용하게 쓰일 수 있다.

Genome-wide survey and expression analysis of F-box genes in wheat

  • Kim, Dae Yeon;Hong, Min Jeong;Seo, Yong Weon
    • 한국작물학회:학술대회논문집
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    • 한국작물학회 2017년도 9th Asian Crop Science Association conference
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    • pp.141-141
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    • 2017
  • The ubiquitin-proteasome pathway is the major regulatory mechanism in a number of cellular processes for selective degradation of proteins and involves three steps: (1) ATP dependent activation of ubiquitin by E1 enzyme, (2) transfer of activated ubiquitin to E2 and (3) transfer of ubiquitin to the protein to be degraded by E3 complex. F-box proteins are subunit of SCF complex and involved in specificity for a target substrate to be degraded. F-box proteins regulate many important biological processes such as embryogenesis, floral development, plant growth and development, biotic and abiotic stress, hormonal responses and senescence. However, little is known about the F-box genes in wheat. The draft genome sequence of wheat (IWGSC Reference Sequence v1.0 assembly) used to analysis a genome-wide survey of the F-box gene family in wheat. The Hidden Markov Model (HMM) profiles of F-box (PF00646), F-box-like (PF12937), F-box-like 2 (PF13013), FBA (PF04300), FBA_1 (PF07734), FBA_2 (PF07735), FBA_3 (PF08268) and FBD (PF08387) domains were downloaded from Pfam database were searched against IWGSC Reference Sequence v1.0 assembly. RNA-seq paired-end libraries from different stages of wheat, such as stages of seedling, tillering, booting, day after flowering (DAF) 1, DAF 10, DAF 20, and DAF 30 were conducted and sequenced by Illumina HiSeq2000 for expression analysis of F-box protein genes. Basic analysis including Hisat, HTseq, DEseq, gene ontology analysis and KEGG mapping were conducted for differentially expressed gene analysis and their annotation mappings of DEGs from various stages. About 950 F-box domain proteins identified by Pfam were mapped to wheat reference genome sequence by blastX (e-value < 0.05). Among them, more than 140 putative F-box protein genes were selected by fold changes cut-offs of > 2, significance p-value < 0.01, and FDR<0.01. Expression profiling of selected F-box protein genes were shown by heatmap analysis, and average linkage and squared Euclidean distance of putative 144 F-box protein genes by expression patterns were calculated for clustering analysis. This work may provide valuable and basic information for further investigation of protein degradation mechanism by ubiquitin proteasome system using F-box proteins during wheat development stages.

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Deoxynivalenol- and zearalenone-contaminated feeds alter gene expression profiles in the livers of piglets

  • Reddy, Kondreddy Eswar;Jeong, Jin young;Lee, Yookyung;Lee, Hyun-Jeong;Kim, Min Seok;Kim, Dong-Wook;Jung, Hyun Jung;Choe, Changyong;Oh, Young Kyoon;Lee, Sung Dae
    • Asian-Australasian Journal of Animal Sciences
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    • 제31권4호
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    • pp.595-606
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    • 2018
  • Objective: The Fusarium mycotoxins of deoxynivalenol (DON) and zerolenone (ZEN) cause health hazards for both humans and farm animals. Therefore, the main intention of this study was to reveal DON and ZEN effects on the mRNA expression of pro-inflammatory cytokines and other immune related genes in the liver of piglets. Methods: In the present study, 15 six-week-old piglets were randomly assigned to the following three different dietary treatments for 4 weeks: control diet, diet containing 8 mg DON/kg feed, and diet containing 0.8 mg ZEN/kg feed. After 4 weeks, liver samples were collected and sequenced using RNA-Seq to investigate the effects of the mycotoxins on genes and gene networks associated with the immune systems of the piglets. Results: Our analysis identified a total of 249 differentially expressed genes (DEGs), which included 99 upregulated and 150 downregulated genes in both the DON and ZEN dietary treatment groups. After biological pathway analysis, the DEGs were determined to be significantly enriched in gene ontology terms associated with many biological pathways, including immune response and cellular and metabolic processes. Consistent with inflammatory stimulation due to the mycotoxin-contaminated diet, the following Kyoto encyclopedia of genes and genomes pathways, which were related to disease and immune responses, were found to be enriched in the DEGs: allograft rejection pathway, cell adhesion molecules, graft-versus-host disease, autoimmune thyroid disease (AITD), type I diabetes mellitus, human T-cell leukemia lymphoma virus infection, and viral carcinogenesis. Genome-wide expression analysis revealed that DON and ZEN treatments downregulated the expression of the majority of the DEGs that were associated with inflammatory cytokines (interleukin 10 receptor, beta, chemokine [C-X-C motif] ligand 9), proliferation (insulin-like growth factor 1, major facilitator superfamily domain containing 2A, insulin-like growth factor binding protein 2, lipase G, and salt inducible kinase 1), and other immune response networks (paired immunoglobulin-like type 2 receptor beta, Src-like-adaptor-1 [SLA1], SLA3, SLA5, SLA7, claudin 4, nicotinamide N-methyltransferase, thyrotropin-releasing hormone degrading enzyme, ubiquitin D, histone $H_2B$ type 1, and serum amyloid A). Conclusion: In summary, our results demonstrated that high concentrations DON and ZEN disrupt immune-related processes in the liver.

사물인터넷 환경에서 대용량 스트리밍 센서데이터의 실시간·병렬 시맨틱 변환 기법 (Real-time and Parallel Semantic Translation Technique for Large-Scale Streaming Sensor Data in an IoT Environment)

  • 권순현;박동환;방효찬;박영택
    • 정보과학회 논문지
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    • 제42권1호
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    • pp.54-67
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    • 2015
  • 최근 사물인터넷 환경에서는 발생하는 센서데이터의 가치와 데이터의 상호운용성을 증진시키기 위해 시맨틱웹 기술과의 접목에 대한 연구가 활발히 진행되고 있다. 이를 위해서는 센서데이터와 서비스 도메인 지식의 융합을 위한 센서데이터의 시맨틱화는 필수적이다. 하지만 기존의 시맨틱 변환기술은 정적인 메타데이터를 시맨틱 데이터(RDF)로 변환하는 기술이며, 이는 사물인터넷 환경의 실시간성, 대용량성의 특징을 제대로 처리할 수 없는 실정이다. 따라서 본 논문에서는 사물인터넷 환경에서 발생하는 대용량 스트리밍 센서데이터의 실시간 병렬처리를 통해 시맨틱 데이터로 변환하는 기법을 제시한다. 본 기법에서는 시맨틱 변환을 위한 변환규칙을 정의하고, 정의된 변환규칙과 온톨로지 기반 센서 모델을 통해 실시간 병렬로 센서데이터를 시맨틱 변환하여 시맨틱 레파지토리에 저장한다. 성능향상을 위해 빅데이터 실시간 분석 프레임워크인 아파치 스톰을 이용하여, 각 변환작업을 병렬로 처리한다. 이를 위한 시스템을 구현하고, 대용량 스트리밍 센서데이터인 기상청 AWS 관측데이터를 이용하여 제시된 기법에 대한 성능평가를 진행하여, 본 논문에서 제시된 기법을 입증한다.

유사도 알고리즘을 활용한 시맨틱 프로세스 검색방안 (Semantic Process Retrieval with Similarity Algorithms)

  • 이홍주
    • Asia pacific journal of information systems
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    • 제18권1호
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    • pp.79-96
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    • 2008
  • One of the roles of the Semantic Web services is to execute dynamic intra-organizational services including the integration and interoperation of business processes. Since different organizations design their processes differently, the retrieval of similar semantic business processes is necessary in order to support inter-organizational collaborations. Most approaches for finding services that have certain features and support certain business processes have relied on some type of logical reasoning and exact matching. This paper presents our approach of using imprecise matching for expanding results from an exact matching engine to query the OWL(Web Ontology Language) MIT Process Handbook. MIT Process Handbook is an electronic repository of best-practice business processes. The Handbook is intended to help people: (1) redesigning organizational processes, (2) inventing new processes, and (3) sharing ideas about organizational practices. In order to use the MIT Process Handbook for process retrieval experiments, we had to export it into an OWL-based format. We model the Process Handbook meta-model in OWL and export the processes in the Handbook as instances of the meta-model. Next, we need to find a sizable number of queries and their corresponding correct answers in the Process Handbook. Many previous studies devised artificial dataset composed of randomly generated numbers without real meaning and used subjective ratings for correct answers and similarity values between processes. To generate a semantic-preserving test data set, we create 20 variants for each target process that are syntactically different but semantically equivalent using mutation operators. These variants represent the correct answers of the target process. We devise diverse similarity algorithms based on values of process attributes and structures of business processes. We use simple similarity algorithms for text retrieval such as TF-IDF and Levenshtein edit distance to devise our approaches, and utilize tree edit distance measure because semantic processes are appeared to have a graph structure. Also, we design similarity algorithms considering similarity of process structure such as part process, goal, and exception. Since we can identify relationships between semantic process and its subcomponents, this information can be utilized for calculating similarities between processes. Dice's coefficient and Jaccard similarity measures are utilized to calculate portion of overlaps between processes in diverse ways. We perform retrieval experiments to compare the performance of the devised similarity algorithms. We measure the retrieval performance in terms of precision, recall and F measure? the harmonic mean of precision and recall. The tree edit distance shows the poorest performance in terms of all measures. TF-IDF and the method incorporating TF-IDF measure and Levenshtein edit distance show better performances than other devised methods. These two measures are focused on similarity between name and descriptions of process. In addition, we calculate rank correlation coefficient, Kendall's tau b, between the number of process mutations and ranking of similarity values among the mutation sets. In this experiment, similarity measures based on process structure, such as Dice's, Jaccard, and derivatives of these measures, show greater coefficient than measures based on values of process attributes. However, the Lev-TFIDF-JaccardAll measure considering process structure and attributes' values together shows reasonably better performances in these two experiments. For retrieving semantic process, we can think that it's better to consider diverse aspects of process similarity such as process structure and values of process attributes. We generate semantic process data and its dataset for retrieval experiment from MIT Process Handbook repository. We suggest imprecise query algorithms that expand retrieval results from exact matching engine such as SPARQL, and compare the retrieval performances of the similarity algorithms. For the limitations and future work, we need to perform experiments with other dataset from other domain. And, since there are many similarity values from diverse measures, we may find better ways to identify relevant processes by applying these values simultaneously.

스마트 TV 환경에서 정보 검색을 위한 사용자 프로파일 기반 필터링 방법 (A User Profile-based Filtering Method for Information Search in Smart TV Environment)

  • 신위살;오경진;조근식
    • 지능정보연구
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    • 제18권3호
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    • pp.97-117
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    • 2012
  • 인터넷 사용자는 비디오를 보면서 소셜 네트워크 서비스를 이용하고 웹 검색을 하고, 비디오에 나타난 상품에 관심이 있을 경우 검색엔진을 통해 정보를 찾는다. 비디오와 사용자의 직접적인 상호작용을 위해 비디오 어노테이션에 대한 연구가 진행되었고, 스마트 TV 환경에서 어노테이션 된 비디오가 활용될 경우 사용자는 객체에 대한 링크를 통해 원하는 상품의 정보를 쉽게 확인할 수 있게 된다. 사용자가 상품에 대한 구매를 원할 경우 상품에 대한 정보검색 이외에 상품평이나 소셜 네트워크 친구의 의견을 통해 구매 결정을 한다. 소셜 네트워크로부터 발생되는 정보는 다른 정보에 비해 신뢰도가 높아 구매 결정에 큰 영향을 미친다. 하지만 현재 소셜 네트워크 서비스는 의견을 얻고자 할 경우 모든 소셜 네트워크 친구들에게 전달되고 많은 의견을 얻게 되어 이들로부터 유용한 정보를 파악하는 것은 쉽지 않다. 본 논문에서는 소셜 네트워크 사용자의 프로파일을 기반으로 상품에 대해 유용한 정보를 제공할 수 있는 친구를 규명하기 위한 필터링 방법을 제안한다. 사용자 프로파일은 페이스북의 사용자 정보와 페이스북 페이지의 'Like' 정보를 이용하여 구성된다. 프로파일의 상품 정보는 GoodRelations 온톨로지와 BestBuy 데이터를 이용하여 의미적으로 표현된다. 사용자가 비디오를 보면서 상품 정보를 얻고자 할 경우 어노테이션된 URI를 이용하여 정보가 전달된다. 시스템은 소셜 네트워크 친구들에 대한 사용자 프로파일과 BestBuy를 기반으로 어노테이션된 상품에 대한 의미적 유사도를 계산하고 유사도 값에 따라 순위가 결정한다. 결정된 순위는 유용한 정보를 제공할 수 있는 소셜 네트워크 상의 친구를 규명하는데 사용된다. 참가자의 동의하에 페이스북 정보를 활용하였고, 시스템에 의해 도출된 결과와 참가자 인터뷰를 통해 평가된 결과를 이용하여 타당성을 검증하였다. 비교 실험의 결과는 제안하는 시스템이 상품 구매결정을 하기 위해 유용한 정보를 획득할 수 있는 방법임을 증명한다.

링크드 데이터를 이용한 인터랙티브 요리 비디오 질의 서비스 시스템 (An Interactive Cooking Video Query Service System with Linked Data)

  • 박우리;오경진;홍명덕;조근식
    • 지능정보연구
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    • 제20권3호
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    • pp.59-76
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    • 2014
  • 스마트 미디어 장치의 발달로 인하여 시공간적인 제약이 없이 비디오를 시청 가능한 환경이 제공됨에 따라 사용자의 시청행태가 수동적인 시청에서 능동적인 시청으로 계속해서 변화하고 있다. 사용자는 비디오를 시청하면서 비디오를 볼 뿐 아니라 관심 있는 내용에 대한 세부적인 정보를 검색한다. 그 결과 사용자와 미디어 장치간의 인터랙션이 주요 관심사로 등장하였다. 이러한 환경에서 사용자들은 일방적으로 정보를 제공해주는 것보다는 자신이 원하는 정보를 웹 검색을 통해 사용자 스스로 정보를 찾지 않고, 쉽고 빠르게 정보를 얻을 수 있는 방법의 필요성을 인식하게 되었으며 그에 따라 인터랙션을 직접 수행하는 것에 대한 요구가 증가하였다. 또한 많은 정보의 홍수 속에서 정확한 정보를 얻는 것이 중요한 이슈가 되었다. 이러한 사용자들의 요구사항을 만족시키기 위해 사용자 인터랙션 기능을 제공하고, 링크드 데이터를 적용한 시스템이 필요한 상황이다. 본 논문에서는 여러 분야 중에서 사람들이 가장 관심 있는 분야중 하나인 요리를 선택하여 문제점을 발견하고 개선하기 위한 방안을 살펴보았다. 요리는 사람들이 지속적인 관심을 갖는 분야이다. 레시피, 비디오, 텍스트와 같은 요리에 관련된 정보들이 끊임없이 증가하여 빅 데이터의 한 부분으로 발전하였지만 사용자와 요리 콘텐츠간의 인터랙션을 제공하는 방법과 기능이 부족하고, 정보가 부정확하다는 문제점을 가지고 있다. 사용자들은 쉽게 요리 비디오를 시청할 수 있지만 비디오는 단 방향으로만 정보를 제공하기 때문에 사용자들의 요구사항을 충족시키기 어렵고, 검색을 통해 정확한 정보를 얻는 것이 어렵다. 이러한 문제를 해결하기 위하여 본 논문에서는 요리 비디오 시청과 동시에 정보제공을 위한 UI(User Interface), UX(User Experience)를 통해 사용자의 편의성을 고려한 환경을 제시하고, 컨텍스트에 맞는 정확한 정보를 제공하기 위해 링크드 데이터를 이용하여 사용자와 비디오 간에 인터랙션을 위한 요리보조 서비스 시스템을 제안한다.

시맨틱 웹 자원의 랭킹을 위한 알고리즘: 클래스중심 접근방법 (A Ranking Algorithm for Semantic Web Resources: A Class-oriented Approach)

  • 노상규;박현정;박진수
    • Asia pacific journal of information systems
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    • 제17권4호
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    • pp.31-59
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    • 2007
  • We frequently use search engines to find relevant information in the Web but still end up with too much information. In order to solve this problem of information overload, ranking algorithms have been applied to various domains. As more information will be available in the future, effectively and efficiently ranking search results will become more critical. In this paper, we propose a ranking algorithm for the Semantic Web resources, specifically RDF resources. Traditionally, the importance of a particular Web page is estimated based on the number of key words found in the page, which is subject to manipulation. In contrast, link analysis methods such as Google's PageRank capitalize on the information which is inherent in the link structure of the Web graph. PageRank considers a certain page highly important if it is referred to by many other pages. The degree of the importance also increases if the importance of the referring pages is high. Kleinberg's algorithm is another link-structure based ranking algorithm for Web pages. Unlike PageRank, Kleinberg's algorithm utilizes two kinds of scores: the authority score and the hub score. If a page has a high authority score, it is an authority on a given topic and many pages refer to it. A page with a high hub score links to many authoritative pages. As mentioned above, the link-structure based ranking method has been playing an essential role in World Wide Web(WWW), and nowadays, many people recognize the effectiveness and efficiency of it. On the other hand, as Resource Description Framework(RDF) data model forms the foundation of the Semantic Web, any information in the Semantic Web can be expressed with RDF graph, making the ranking algorithm for RDF knowledge bases greatly important. The RDF graph consists of nodes and directional links similar to the Web graph. As a result, the link-structure based ranking method seems to be highly applicable to ranking the Semantic Web resources. However, the information space of the Semantic Web is more complex than that of WWW. For instance, WWW can be considered as one huge class, i.e., a collection of Web pages, which has only a recursive property, i.e., a 'refers to' property corresponding to the hyperlinks. However, the Semantic Web encompasses various kinds of classes and properties, and consequently, ranking methods used in WWW should be modified to reflect the complexity of the information space in the Semantic Web. Previous research addressed the ranking problem of query results retrieved from RDF knowledge bases. Mukherjea and Bamba modified Kleinberg's algorithm in order to apply their algorithm to rank the Semantic Web resources. They defined the objectivity score and the subjectivity score of a resource, which correspond to the authority score and the hub score of Kleinberg's, respectively. They concentrated on the diversity of properties and introduced property weights to control the influence of a resource on another resource depending on the characteristic of the property linking the two resources. A node with a high objectivity score becomes the object of many RDF triples, and a node with a high subjectivity score becomes the subject of many RDF triples. They developed several kinds of Semantic Web systems in order to validate their technique and showed some experimental results verifying the applicability of their method to the Semantic Web. Despite their efforts, however, there remained some limitations which they reported in their paper. First, their algorithm is useful only when a Semantic Web system represents most of the knowledge pertaining to a certain domain. In other words, the ratio of links to nodes should be high, or overall resources should be described in detail, to a certain degree for their algorithm to properly work. Second, a Tightly-Knit Community(TKC) effect, the phenomenon that pages which are less important but yet densely connected have higher scores than the ones that are more important but sparsely connected, remains as problematic. Third, a resource may have a high score, not because it is actually important, but simply because it is very common and as a consequence it has many links pointing to it. In this paper, we examine such ranking problems from a novel perspective and propose a new algorithm which can solve the problems under the previous studies. Our proposed method is based on a class-oriented approach. In contrast to the predicate-oriented approach entertained by the previous research, a user, under our approach, determines the weights of a property by comparing its relative significance to the other properties when evaluating the importance of resources in a specific class. This approach stems from the idea that most queries are supposed to find resources belonging to the same class in the Semantic Web, which consists of many heterogeneous classes in RDF Schema. This approach closely reflects the way that people, in the real world, evaluate something, and will turn out to be superior to the predicate-oriented approach for the Semantic Web. Our proposed algorithm can resolve the TKC(Tightly Knit Community) effect, and further can shed lights on other limitations posed by the previous research. In addition, we propose two ways to incorporate data-type properties which have not been employed even in the case when they have some significance on the resource importance. We designed an experiment to show the effectiveness of our proposed algorithm and the validity of ranking results, which was not tried ever in previous research. We also conducted a comprehensive mathematical analysis, which was overlooked in previous research. The mathematical analysis enabled us to simplify the calculation procedure. Finally, we summarize our experimental results and discuss further research issues.