• 한국미생물·생명공학회지
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• 제17권5호
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• pp.454-460
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• 1989

자연계로부터 분리한 Gram 음성세균과 함께 유전자 조작기법으로 kanamycin (Km)과 chloramphenicol (Cm)에 대한 내성유전자를 재조합한 균주들에서 그 내성유전자의 전이율을 conjugation 방법으로 몇 가지 상이한 수질환경에서 비교 연구하였다. 자연계로부터 분리한 DK1 균주와 재조합한 DKC601이나 DKH103을 donor로 하고 recipient 및 기타 조건을 같게 했을 때, donor가 가지고 있던 Km$^{${\gamma}$}$ 유전자의 전이율은 자연환경의 하천수에서 보다 실험실 환경의 멸균한 하폐수에서 더 높았고, 실험실 환경에서는 멸균한 하폐수보다 Luria-Bertani (LB) 액체배지에서 휠씬 높았다. 온도를 2$0^{\circ}C$와 3$0^{\circ}C$로 했을 때에는 어느 종류의 균주를 donor로 사용하더라도 전이율에는 큰 차이가 없었으나, 전이가 일어나는 시간은 3$0^{\circ}C$에서 조금 빨랐다. 하천수의 자연환경에서나 실험실이 멸균하폐수에서는 항생제내성유전자의 전이율은 두 가지 종류의 균주 사이에 차이가 거의 없거나 재조합된 균주에서 $10^{-1}$ 정도로 낮다. 그러나 실험실 환경의 LB액체배지에서는 전이가 일어나는데 필요한 반응시간이 재조합된 균주에서 더 길 뿐만 아니라, 전이율에 있어서도 $10^{-3}$ - $10^{-4}$ 정도 낮았다. 그리고 MT1 균주를 recipient로 하고 재조합된 균주인 DKC601과 DKH103을 donor 로 했을 경우에는 donor에 따라 전이율의 차이가 없었으나, DKC601을 donor로 하고 MT1과 MT2을 각각 recipient로 했을 경우에는 recipient에 따라 전이율이 $10^{1}$ - $10^{2}$ 정도 차이가 났다.

• 한국버섯학회지
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• 제9권1호
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• pp.27-33
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• 2011

보존중인 구름버섯속 균주를 선발하여 배양 및 형태적 특성을 조사하여 비슷한 균주별로 그룹화하여 rDNA의 ITS 영역을 증폭하여 염기서열을 결정한 결과 보존시 균주의 학명과 많은 차이를 보였으며, 균사의 모양 및 색깔에도 많은 차이를 보였다. rDNA의 ITS 영역의 염기서열을 바탕으로 보존 당시 동정된 결과와 염기서열 분석을 통한 결과를 비교한 결과 종이 다른 균주가 5균주와 학명이 다른 균주가 6균주로 전체의 61%를 차지하였다. 국내에서 수집한 구름버섯의 경우 T. versicolor, T. elegans, T. gibbosa 등 3개 속으로만 동정되었고, 미국에서 수집한 균주는 T. junipericola로 동정되었다. Trametes spp의 RAPD 분석을 통한 유전적인 다형성 조사에서 T. versicolor와 T. gibbosa는 아주 다른 밴드패턴을 보였다. 또한 같은 종내에서서 분포지역에 따라 상이한 밴드 패턴을 보였다. 유전적인 유연관계 분석에서는 T. vericolor 등 4개의 분류군으로 나누어졌으며, ITS부위 유전자수준의 상동성 비교에서도 비슷한 경향을 보였다. 따라서 기존 목록과 완전히 다른 속으로 동정된 균주들에 대해서는 계통분류학적인 유연관계 분석과 보존중인 자실체 유전자와의 상동성을 비교하여 보존진균의 오염 여부를 판단하여 기존 목록의 학명을 재분류해야 할 것으로 판단된다.

• 한국축산식품학회지
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• 제38권5호
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• pp.851-865
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• 2018

This study investigated the prevalence of Listeria monocytogenes in slaughterhouses, and determined serovars and genotypes, and antibiotic resistance of the isolates obtained from slaughterhouses and humans in Korea. Two hundred ninety samples were collected from feces (n=136), carcasses [n=140 (cattle: n=61, swine: n=79)], and washing water (n=14) in nine slaughterhouses. Eleven human isolates were obtained from hospitals and the Korea Center for Disease Control and Prevention. Listeria monocytogenes was enriched and identified, using polymerase chain reaction (PCR) and 16S rRNA sequencing. Serovars and presence of virulence genes were determined, and genetic correlations among the isolates were evaluated by the restriction digest patterns of AscI. Antibiotic resistance of L. monocytogenes isolates were examined against 12 different antibiotics. Of 290 slaughterhouse samples, 15 (5.17%) carcass samples were L. monocytogenes positive. Most L. monocytogenes isolates possessed all the virulence genes, while polymorphisms in the actA gene were found between carcass and human isolates. Serovars 1/2a (33.3%) and 1/2b (46.7%) were the most frequent in carcass isolates. Genetic correlations among the isolates from carcass and clinical isolates were grouped within serotypes, but there were low geographical correlations. Most L. monocytogenes isolates were antibiotic resistant, and some strains showed resistance to more than four antibiotics. These results indicate that L. monocytogenes are isolated from carcass and human in Korea, and they showed high risk serotypes and antibiotic resistance. Therefore, intensive attentions are necessary to be aware for the risk of L. monocytogenes in Korea.

• Journal of Microbiology and Biotechnology
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• 제13권5호
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• pp.751-758
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• 2003

Mutations in the rdxA gene had been reported to be associated with metronidazole resistance in Helicobacter pylori. In this study, sensitivity to metronidazole, RAPD profiles, and DNA sequences of the rdxA gene of 32 local H. pylori isolates were analyzed. Of these, 13 were found to be resistant, while 19 were sensitive to metronidazole. Among the 32 isolates, 10 were paired isolates from the antrum and body of the stomach of individual patients. Interestingly, the RAPD profiles of isolates from individual patients were distinctly different from each other, whereas paired isolates from the same patient were identical regardless of their sensitivities to metronidazole. DNA sequences of the rdxA gene of all 32 isolates showed 95% to 97% homology when compared with the HP0954 locus of H. pylori 26695 genome. From the 19 metronidazole-sensitive strains, 10 (with $MIC{\le}0.5\;\mu\textrm{g}/ml$ metronidazole) were selected and induced to become metronidazole resistant by sequentially passaging through serial 2-fold increasing concentrations of metronidazole. Nine of the 10 induced paired isolates showed mutations in the rdxA sequences which resulted in truncated protein or changes in the translated amino acid sequences. However, the changes did not occur at any specific site in the DNA or amino acid sequences of the rdxA gene of all the isolates analyzed. The results show that the rdxA gene cannot be a definitive marker for metronidazole resistance in H. pylori isolates of an Asian population, and that other factors may contribute to resistance to metronidazole.

• The Plant Pathology Journal
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• 제21권3호
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• pp.207-213
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• 2005

Cultural, morphological and pathogenic variation in Indian isolates of Ascochyta rabiei, the causal agent of blight of chickpea, was investigated. Fungal isolates representative of seven agroclimatic regions in north western plain zones (NWPZ) of India showed variation in colony colour as mouse gray with green hue, light mouse gray with slate gray centre and gray with dark brown centre, when grown on chickpea dextrose agar (CDA). Conidiomatal color of the isolates varied from brown to slate gray and black. The number of conidiomata and conidia formed on CDA ranged from 49.7 to 90.7 and $5.5\times10^4\;to\;3\times10^5cm^{-2}$, respectively. The size of conidiomata and conidia of A. rabiei isolates varied from $274\times232{\mu}m\;to\;156\times116{\mu}m$, and from $14.0\times6.2{\mu}m\;to\;10.7\times4.6{\mu}m$, respectively. Fourteen A. rabiei isolates from the seven agroclimatic regions of NWPZ were evaluated for their virulence on 180 chickpea genotypes in controlled environment. Cluster analysis based on the disease rating on a 1-9 scale indicated higher similarity coefficient (> 0.65) between isolates from different agroecological regions, while few isolates from the same region had less similarity. The 14 isolates were grouped into eight pathotypes at > 0.5 similarity coefficient. Sixteen genotypes were identified as probable differentials to distinguish A. rabiei isolates.

• 식물병연구
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• 제7권2호
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• pp.93-101
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• 2001

1996년부터 1998년까지 한국내 십자화과 채소작물의 포장에서 시들음병 발생을 조사한 결과, 배추와 무에서는 발생율이 최대 40%까지 심하게 발생하였으며, 양배추에서는 일부 포장에서만 약간 발생하였다. 시들음증상을 보이는 십자화과 채소작물의 병든 뿌리로부터 총 123균주의 Fusarium균이 분리하였으며, 공시균주들의 형태적 및 배양적 특성을 조사한 결과, 모두 Fusarium of oxysporum으로 동정되었다 공시균주들의 배추 및 양배추에 대한 병원성은 공시품종에 따라 다소 차이는 있었으나 균주들간에 뚜렷하게 구분되지 않았다. 무에 대한 병원성에 있어서는 대체로 무분리 균주들이 배추 및 양배추분리 균주들보다 강한 것으로 나타났다 공시균주들의 십자화과 이외의 채소작물에 대한 병원성검정 결과, 고추 등 8개 작물에 대해 모두 병원성이 없었다 이 연구결과, 배추감염 균주들의 병원형은 양배추감염 균주들의 병원형과 동일하고, 무감염 균주들의 병원형과는 다른 것으로 나타났다.

• Mycobiology
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• 제34권2호
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• pp.99-103
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• 2006

Toxicity of the fungicide Flutolanil was in vitro tested against 20 isolates of Macrophomina phaseolina and cotton seedlings of ten commercial cotton cultivars. The isolates were recovered from roots of cotton plants obtained from different cotton-growing areas in Egypt. Most of the tested isolates were sensitive to Flutolanil; however, they varied in sensitivity. Twenty-five percent of the isolates were highly sensitive where $IC_{50}$ ranged from < 1 to $5.1{\mu}g/ml$, 20% of the isolates were sensitive where $IC_{50}$ ranged from 15 to $30{\mu}g/ml$, 45% of the isolates were moderately sensitive where $IC_{50}$ ranged from 46 to $58.5{\mu}g/ml$, and 10% of the isolates were not much sensitive (tolerant) where $IC_{50}$ was > $100{\mu}g/ml$. Flutolanil was very safe on both shoots and roots of the tested cultivars ($IC_{50}\;>\;100{\mu}g/ml$). Treating cotton seeds with Flutolanil resulted in highly significant (P < 0.01) reductions in pathogenicity of 18 isolates and a significant reduction (P < 0.05) in pathogenicity of isolate $M_{29}.\;M_{1}$ was the only isolate, which was insensitive to the application of Flutolanil. In vivo toxicity to Flutolanil was not correlated with its in vitro toxicity. However, a highly significant correlation (r = 0.60, P < 0.01) was observed between pathogenicity of isolates and the in vivo toxicity of the fungicide.

• BMB Reports
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• 제31권3호
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• pp.281-286
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• 1998

Hepatitis C virus (HCV) core proteins from two different isolates (HCV-1 and HCV-RH) were expressed in Spotioptera Jrugiperda (Sf9) insect cells. The RH core consisted of two major species of proteins (21 kDa and 19 kDa). On the other hand, the HCV-1 core was approximately 16 kDa in a SDS-PAGE gel. Both core proteins were phosphorylated in vivo on serine residues. Furthermore, the RH core but not HCV-1 core formed dimers, indicating that the protein conformation of the core in these two isolates is dfferent from one another. Immunofluorescence studies showed that the RH core was present in the cytoplasm, whereas the HCV-1 core was localized predominantly to the nucleus in recombinant baculovirus-infected insect cells. Since the major difference between the two isolates is the codon 9 of the core protein, a single amino acid substitution appears to play a major role in the protein conformation and these properties may reflect the different biological functions of core proteins in HCV-infected cells.

• 미생물학회지
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• 제30권3호
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• pp.177-180
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• 1992

Among 120 U. maydis strains isolated in Korea 14 different strains containing specific viral dsRNA segments were analyzed for the distribution of dsRNA and the production of toxin protein. Several distinctive dsRNA patterns were identified, 9 cases of P type with typical H, M and L ds RNA and one case of non-P-type, the frequency of a specific isolate was decreased with increasing number of dsRNA segments. The presence of dsRNA had no effect on the cultural or morphological phenotype of the host. Two isolates containing P type dsRNA segments appeared to produce toxin protein (killer strains) which inhibited the growth of 4 isolates (sensitive strain) with different susceptibility. Two killer strains contain unique M dsRNA segment which may code for toxin protein. However, the presence of toxin-sensitive strains among dsRNA-free isolates was similar to that of ds RNA containing strains.

• The Plant Pathology Journal
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• 제19권5호
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• pp.221-226
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• 2003

Twenty universal rice primers (URPs) were used to detect PCR polymorphisms in 25 isolates of six different Alternaria species producing host specific toxins (HST). Eight URPs could be used to reveal PCR polymorphisms of Alternaria isolates at the intra- and inter-species levels. Specific URP-PCR polymorphic bands that are different from those of the other Alternaria spp. were observed on A. gaisen and A. longipes isolates. Unweighted pair-group method with arithmetic mean (UPGMA) cluster analysis using 94 URP polymorphic bands revealed three clustered groups (A. gaisen group, A. mati complex group, and A. logipes group).