• Title/Summary/Keyword: Data Partition Algorithm

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Atrial Fibrillation Pattern Analysis based on Symbolization and Information Entropy (부호화와 정보 엔트로피에 기반한 심방세동 (Atrial Fibrillation: AF) 패턴 분석)

  • Cho, Ik-Sung;Kwon, Hyeog-Soong
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.16 no.5
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    • pp.1047-1054
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    • 2012
  • Atrial fibrillation (AF) is the most common arrhythmia encountered in clinical practice, and its risk increases with age. Conventionally, the way of detecting AF was the time·frequency domain analysis of RR variability. However, the detection of ECG signal is difficult because of the low amplitude of the P wave and the corruption by the noise. Also, the time·frequency domain analysis of RR variability has disadvantage to get the details of irregular RR interval rhythm. In this study, we describe an atrial fibrillation pattern analysis based on symbolization and information entropy. We transformed RR interval data into symbolic sequence through differential partition, analyzed RR interval pattern, quantified the complexity through Shannon entropy and detected atrial fibrillation. The detection algorithm was tested using the threshold between 10ms and 100ms on two databases, namely the MIT-BIH Atrial Fibrillation Database.

A Space Efficient Indexing Technique for DNA Sequences (공간 효율적인 DNA 시퀀스 인덱싱 방안)

  • Song, Hye-Ju;Park, Young-Ho;Loh, Woong-Kee
    • Journal of KIISE:Databases
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    • v.36 no.6
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    • pp.455-465
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    • 2009
  • Suffix trees are widely used in similar sequence matching for DNA. They have several problems such as time consuming, large space usages of disks and memories and data skew, since DNA sequences are very large and do not fit in the main memory. Thus, in the paper, we present a space efficient indexing method called SENoM, allowing us to build trees without merging phases for the partitioned sub trees. The proposed method is constructed in two phases. In the first phase, we partition the suffixes of the input string based on a common variable-length prefix till the number of suffixes is smaller than a threshold. In the second phase, we construct a sub tree based on the disk using the suffix sets, and then write it to the disk. The proposed method, SENoM eliminates complex merging phases. We show experimentally that proposed method is effective as bellows. SENoM reduces the disk usage less than 35% and reduces the memory usage less than 20% compared with TRELLIS algorithm. SENoM is available to query efficiently using the prefix tree even when the length of query sequence is large.

Spherical Pyramid-Technique : An Efficient Indexing Technique for Similarity Search in High-Dimensional Data (구형 피라미드 기법 : 고차원 데이터의 유사성 검색을 위한 효율적인 색인 기법)

  • Lee, Dong-Ho;Jeong, Jin-Wan;Kim, Hyeong-Ju
    • Journal of KIISE:Software and Applications
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    • v.26 no.11
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    • pp.1270-1281
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    • 1999
  • 피라미드 기법 1 은 d-차원의 공간을 2d개의 피라미드들로 분할하는 특별한 공간 분할 방식을 이용하여 고차원 데이타를 효율적으로 색인할 수 있는 새로운 색인 방법으로 제안되었다. 피라미드 기법은 고차원 사각형 형태의 영역 질의에는 효율적이나, 유사성 검색에 많이 사용되는 고차원 구형태의 영역 질의에는 비효율적인 면이 존재한다. 본 논문에서는 고차원 데이타를 많이 사용하는 유사성 검색에 효율적인 새로운 색인 기법으로 구형 피라미드 기법을 제안한다. 구형 피라미드 기법은 먼저 d-차원의 공간을 2d개의 구형 피라미드로 분할하고, 각 단일 구형 피라미드를 다시 구형태의 조각으로 분할하는 특별한 공간 분할 방법에 기반하고 있다. 이러한 공간 분할 방식은 피라미드 기법과 마찬가지로 d-차원 공간을 1-차원 공간으로 변환할 수 있다. 따라서, 변환된 1-차원 데이타를 다루기 위하여 B+-트리를 사용할 수 있다. 본 논문에서는 이렇게 분할된 공간에서 고차원 구형태의 영역 질의를 효율적으로 처리할 수 있는 알고리즘을 제안한다. 마지막으로, 인위적 데이타와 실제 데이타를 사용한 다양한 실험을 통하여 구형 피라미드 기법이 구형태의 영역 질의를 처리하는데 있어서 기존의 피라미드 기법보다 효율적임을 보인다.Abstract The Pyramid-Technique 1 was proposed as a new indexing method for high- dimensional data spaces using a special partitioning strategy that divides d-dimensional space into 2d pyramids. It is efficient for hypercube range query, but is not efficient for hypersphere range query which is frequently used in similarity search. In this paper, we propose the Spherical Pyramid-Technique, an efficient indexing method for similarity search in high-dimensional space. The Spherical Pyramid-Technique is based on a special partitioning strategy, which is to divide the d-dimensional data space first into 2d spherical pyramids, and then cut the single spherical pyramid into several spherical slices. This partition provides a transformation of d-dimensional space into 1-dimensional space as the Pyramid-Technique does. Thus, we are able to use a B+-tree to manage the transformed 1-dimensional data. We also propose the algorithm of processing hypersphere range query on the space partitioned by this partitioning strategy. Finally, we show that the Spherical Pyramid-Technique clearly outperforms the Pyramid-Technique in processing hypersphere range queries through various experiments using synthetic and real data.

Hierarchical Organization of Embryo Data for Supporting Efficient Search (배아 데이터의 효율적 검색을 위한 계층적 구조화 방법)

  • Won, Jung-Im;Oh, Hyun-Kyo;Jang, Min-Hee;Kim, Sang-Wook
    • Journal of the Institute of Electronics Engineers of Korea CI
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    • v.48 no.2
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    • pp.16-27
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    • 2011
  • Embryo is a very early stage of the development of multicellular organism such as animals and plants. It is an important research target for studying ontogeny because the fundamental body system of multicellular organism is determined during an embryo state. Researchers in the developmental biology have a large volume of embryo image databases for studying embryos and they frequently search for an embryo image efficiently from those databases. Thus, it is crucial to organize databases for their efficient search. Hierarchical clustering methods have been widely used for database organization. However, most of previous algorithms tend to produce a highly skewed tree as a result of clustering because they do not simultaneously consider both the size of a cluster and the number of objects within the cluster. The skewed tree requires much time to be traversed in users' search process. In this paper, we propose a method that effectively organizes a large volume of embryo image data in a balanced tree structure. We first represent embryo image data as a similarity-based graph. Next, we identify clusters by performing a graph partitioning algorithm repeatedly. We check constantly the size of a cluster and the number of objects, and partition clusters whose size is too large or whose number of objects is too high, which prevents clusters from growing too large or having too many objects. We show the superiority of the proposed method by extensive experiments. Moreover, we implement the visualization tool to help users quickly and easily navigate the embryo image database.

A Study on Improved Image Matching Method using the CUDA Computing (CUDA 연산을 이용한 개선된 영상 매칭 방법에 관한 연구)

  • Cho, Kyeongrae;Park, Byungjoon;Yoon, Taebok
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.16 no.4
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    • pp.2749-2756
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    • 2015
  • Recently, Depending on the quality of data increases, the problem of time-consuming to process the image is raised by being required to accelerate the image processing algorithms, in a traditional CPU and CUDA(Compute Unified Device Architecture) based recognition system for computing speed and performance gains compared to OpenMP When character recognition has been learned by the system to measure the input by the character data matching is implemented in an environment that recognizes the region of the well, so that the font of the characters image learning English alphabet are each constant and standardized in size and character an image matching method for calculating the matching has also been implemented. GPGPU (General Purpose GPU) programming platform technology when using the CUDA computing techniques to recognize and use the four cores of Intel i5 2500 with OpenMP to deal quickly and efficiently an algorithm, than the performance of existing CPU does not produce the rate of four times due to the delay of the data of the partition and merge operation proposed a method of improving the rate of speed of about 3.2 times, and the parallel processing of the video card that processes a result, the sequential operation of the process compared to CPU-based who performed the performance gain is about 21 tiems improvement in was confirmed.

An Energy-Efficient Clustering Using Division of Cluster in Wireless Sensor Network (무선 센서 네트워크에서 클러스터의 분할을 이용한 에너지 효율적 클러스터링)

  • Kim, Jong-Ki;Kim, Yoeng-Won
    • Journal of Internet Computing and Services
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    • v.9 no.4
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    • pp.43-50
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    • 2008
  • Various studies are being conducted to achieve efficient routing and reduce energy consumption in wireless sensor networks where energy replacement is difficult. Among routing mechanisms, the clustering technique has been known to be most efficient. The clustering technique consists of the elements of cluster construction and data transmission. The elements that construct a cluster are repeated in regular intervals in order to equalize energy consumption among sensor nodes in the cluster. The algorithms for selecting a cluster head node and arranging cluster member nodes optimized for the cluster head node are complex and requires high energy consumption. Furthermore, energy consumption for the data transmission elements is proportional to $d^2$ and $d^4$ around the crossover region. This paper proposes a means of reducing energy consumption by increasing the efficiency of the cluster construction elements that are regularly repeated in the cluster technique. The proposed approach maintains the number of sensor nodes in a cluster at a constant level by equally partitioning the region where nodes with density considerations will be allocated in cluster construction, and reduces energy consumption by selecting head nodes near the center of the cluster. It was confirmed through simulation experiments that the proposed approach consumes less energy than the LEACH algorithm.

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Graph-based High-level Motion Segmentation using Normalized Cuts (Normalized Cuts을 이용한 그래프 기반의 하이레벨 모션 분할)

  • Yun, Sung-Ju;Park, An-Jin;Jung, Kee-Chul
    • Journal of KIISE:Software and Applications
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    • v.35 no.11
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    • pp.671-680
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    • 2008
  • Motion capture devices have been utilized in producing several contents, such as movies and video games. However, since motion capture devices are expensive and inconvenient to use, motions segmented from captured data was recycled and synthesized to utilize it in another contents, but the motions were generally segmented by contents producers in manual. Therefore, automatic motion segmentation is recently getting a lot of attentions. Previous approaches are divided into on-line and off-line, where ow line approaches segment motions based on similarities between neighboring frames and off-line approaches segment motions by capturing the global characteristics in feature space. In this paper, we propose a graph-based high-level motion segmentation method. Since high-level motions consist of repeated frames within temporal distances, we consider similarities between neighboring frames as well as all similarities among all frames within the temporal distance. This is achieved by constructing a graph, where each vertex represents a frame and the edges between the frames are weighted by their similarity. Then, normalized cuts algorithm is used to partition the constructed graph into several sub-graphs by globally finding minimum cuts. In the experiments, the results using the proposed method showed better performance than PCA-based method in on-line and GMM-based method in off-line, as the proposed method globally segment motions from the graph constructed based similarities between neighboring frames as well as similarities among all frames within temporal distances.

Development of Sample Survey Design for the Industrial Research and Development Statistics (표본조사에 의한 기업 연구개발활동 통계 작성방안)

  • Cho, Seong-Pyo;Park, Sun-Young;Han, Ki-In;Noh, Min-Sun
    • Journal of Technology Innovation
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    • v.17 no.2
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    • pp.1-23
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    • 2009
  • The Survey on the Industrial Research and Development(R&D) is the primary source of information on R&D performed by Korea industrial sector. The results of the survey are used to assess trends in R&D expenditures. Government agencies, corporations, and research organizations use the data to investigate productivity determinants, formulate tax policy, and compare individual company performance with industry averages. Recently, Korea Industrial Technology Association(KOITA) has collected the data by complete enumeration. Koita has, currently, considered sample survey because the number of R&D institutions in industry has been dramatically increased. This study develops survey design for the industrial research and development(R&D) statistics by introducing a sample survey. Companies are divided into 8 groups according to the amount of R&D expenditures and firm size or type. We collect the sample from 24 or 8 sampling strata and compare the results with those of complete enumeration survey. The estimates from 24 sampling strata are not significantly different to the results of complete enumeration survey. We propose the survey design as follows: Companies are divided into 11 groups including the companies of which R&D expenditures are unknown. All large companies are included in the survey and medium and small companies are sampled from 70% and 3%. Simple random sampling (SRS) is applied to the small company partition since they show uniform distribution in R&D expenditures. The independent probability proportionate to size (PPS) sampling procedure may be applied to those companies identified as 'not R&D performers'. When respondents do not provide the requested information, estimates for the missing data are made using imputation algorithms. In the future study, new key variables should be developed in survey questionnaires.

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