• Title/Summary/Keyword: DNA 바코드

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Report on an Outbreak of the Onion Thrips, Thrips tabaci, Infesting Welsh Onion during Winter Season (동절기 대파 재배지 파총채벌레 발생 보고)

  • Kim, Chulyoung;Choi, Dooyeol;Kim, Yonggyun
    • Korean journal of applied entomology
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    • v.60 no.2
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    • pp.247-254
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    • 2021
  • An outbreak of the onion thrips, Thrips tabaci, was observed in welsh onion cultured in greenhouse during winter season (Jan ~ Feb). The thrips was identified using DNA barcode. Weekly occurrence was around 240 ~ 700 adults per trap. Trap color gave significant influence on the capture efficiency with a preference on yellow compared to blue sticky trap. Subsequently, most (> 90%) onions exhibited a damage symptom induced by the thrips. This outbreak was observed only in a specific area but not in nearby greenhouses. This discontinuous occurrence pattern was further investigated by analyzing flight behavior through in- and out- door tests. About 1.5 mm-body length adults could jump up to about 5 cm and fly up to 2 m in altitude, which was the top of the greenhouse. This suggested their migrating potential to nearby (< 2 m) greenhouses. However, few were detected in the neighboring places probably due to physical hindrance with low temperatures between greenhouses. This is reasoned why the onion thrips forms a patch distribution among greenhouses during winter season.

New record of an alien plant, Desmodium paniculatum (Fabaceae), in Korea based on a morphological examination and DNA barcoding (형태와 DNA 바코드에 근거한 한국 미기록 외래식물의 보고, 미국잔디갈고리(콩과))

  • JIN, Dong-Pil;KIM, Jung-Hyun;SIM, Sunhee;SUH, Hwa-Jung;KIM, Jin-Seok
    • Korean Journal of Plant Taxonomy
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    • v.51 no.2
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    • pp.133-140
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    • 2021
  • Desmodium paniculatum (Fabaceae), native to North America and an alien plant in Japan, was newly found in Hwaseong-si and Daejeon-si, Korea. This species is distinguished from Korean-related taxa based on certain morphological features. Specifically, it is a perennial herb, with a 4-5 jointed loment, and with the basal suture moderately incised between the articles. In the field, D. paniculatum grows around rivers and roadsides, suggesting that it is likely to have been introduced through river improvement work and road construction. On the phylogenetic tree based on an internal transcribed spacer, Korean individuals forms a clade with a Japanese individual. Here, we report a morphological description, photographs, an illustration, and the locality of D. paniculatum.

Control efficacy of BtPlus against two mosquitoes, Aedes koreicus and Culex vagans (한국숲모기와 줄다리집모기에 대한 비티플러스 방제 효과)

  • Kim, Yonggyun;Minoo, Sajjadian;Ahmed, Shabbir
    • Korean journal of applied entomology
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    • v.59 no.1
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    • pp.41-54
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    • 2020
  • Two mosquito species were collected in still-water near farming area in Andong, Korea. Based on morphological characters, these two mosquitoes were identified as Aedes koreicus and Culex vagans, respectively. DNA barcode analyses supported the identification. An entomopathogenic bacterium, Bacillus thuringiensis subsp. israelensis (BtI), exhibited insecticidal activities against the two mosquito species and its virulence was more potent than that of B. thuringiensis subsp. kurstaki. It has been known that the bacterial metabolites of Xenorhabdus spp. suppress insect immunity and enhance pathogenicity of B. thuringiensis. This study tested the effect of the bacterial culture broth of Xenorhabdus spp. on enhancing BtI pathogenicity. Among three Xenorhabdus spp., culture broth of X. ehlersii (Xe) was relatively effective to enhance BtI pathogenicity against both mosquito species. Indeed, organic extracts of Xe culture broth suppressed the hemocyte-spreading behavior, suggesting the presence of immunosuppressant in the culture broth. These results suggest a formulation of BtPlus by mixing BtI spore and Xe culture broth to be applied to control the two mosquito species.

Temporal variation in the community structure of green tide forming macroalgae(Chlorophyta; genus Ulva) on the coast of Jeju Island, Korea based on DNA barcoding (DNA 바코드를 이용한 제주도 연안 파래대발생(green tide)을 형성하는 갈파래(genus Ulva) 군집구조 및 주요 종 구성의 시간적 변이)

  • Hye Jin Park;Seo Yeon Byeon;Sang Rul Park;Hyuk Je Lee
    • Korean Journal of Environmental Biology
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    • v.40 no.4
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    • pp.464-476
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    • 2022
  • In recent years, macroalgal bloom occurs frequently in coastal oceans worldwide. It might be attributed to accelerating climate change. "Green tide" events caused by proliferation of green macroalgae (Ulva spp.) not only damage the local economy, but also harm coastal environments. These nuisance events have become common across several coastal regions of continents. In Korea, green tide incidences are readily seen throughout the year along the coastlines of Jeju Island, particularly the northeastern coast, since the 2000s. Ulva species are notorious to be difficult for morphology-based species identification due to their high degrees of phenotypic plasticity. In this study, to investigate temporal variation in Ulva community structure on Jeju Island between 2015 and 2020, chloroplast barcode tufA gene was sequenced and phylogenetically analyzed for 152 specimens from 24 sites. We found that Ulva ohnoi and Ulva pertusa known to be originated from subtropical regions were the most predominant all year round, suggesting that these two species contributed the most to local green tides in this region. While U. pertusa was relatively stable in frequency during 2015 to 2020, U. ohnoi increased 16% in frequency in 2020 (36.84%), which might be associated with rising sea surface temperature from which U. ohnoi could benefit. Two species (Ulva flexuosa, Ulva procera) of origins of Europe should be continuously monitored. The findings of this study provide valuable information and molecular genetic data of genus Ulva occurring in southern coasts of Korea, which will help mitigate negative influences of green tide events on Korea coast.

Assaying Mitochondrial COI Sequences and Their Molecular Studies in Hexapoda, PART I: From 2000 to 2009 (육각강에서 보고된 미토콘드리아 COI 염기서열과 이들을 이용한 분자 연구 논문 분석, 파트 I: 2000년~2009년)

  • Lee, Wonhoon;Park, Jongsun;Akimoto, Shin-Ichi;Kim, Sora;Kim, Yang-Su;Lee, Yerim;Kim, Kwang-Ho;Lee, Si Hyeock;Lee, Yong-Hwan;Lee, Seunghwan
    • Korean journal of applied entomology
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    • v.52 no.4
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    • pp.395-402
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    • 2013
  • Since 2000, a large number of molecular studies have been conducted in Hexapoda with generating large amount of mitochondrial sequences. In this study, to review mitochondrial COI sequences and their molecular studies reported in Hexapoda from 2000 to 2009, 488 molecular studies conducted based on 58,323 COI sequences were categorized according to 26 orders and the positions of COI sequences (5', 3', and entire regions). The numbers of molecular studies in which the three regions utilized varied largely among the 26 orders; however, seven orders showed preferred positions of COI sequences in the researches: Diptera and Orthoptera revealed the largest number of studies in the 5' region; while, Coleoptera, Phthiraptera, Odonata, Phasmatodea, and Psocoptera, showed the largest number of studies in the 3' region. From comparing 84 molecular studies published before 2000, we observed the possibilities that molecular studies in Coleoptera, Diptera, Phthiraptera, and Phasmatodea from 2000 to 2009 had been followed classical studies using the positions of COI sequences well-known until 1999. This study provides useful information to understand the overall trends in COI sequence usages as well as molecular studies conducted from 2000 to 2009 in Hexapoda.