• Title/Summary/Keyword: Carbon Isotopes

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Paratope Mapping of Anti-Ex-A IgG as Studied by NMR (NMR에 의한 anti-Ex-A IgG의 항원결합부위 해석)

  • Kim, Ha-Hyeong;Lee, Gwang-Pyo
    • YAKHAK HOEJI
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    • v.40 no.4
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    • pp.422-427
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    • 1996
  • The anti-Ex-A IgG was specifically labeled with stable isotopes, DL-His-2,4-$d_2$, L-Phe-$d_5$, L-Trp-$d_5$, L-Tyr-2,6-$d_2$ and L-[1-$^{13}C$]Trp, by growing hybridoma cell in serum-free medium. By use of NMR spectroscopy with selectively labeled Fab fragment, we applied a paratope mapping on antigen-antibody complex. Assignments of the observed carbonyl carbon resonances have been determined by using $^{13}C$-$^{15}N$ double labeling method in order to assign the Trp resonances. Photo CIDNP was also applied to investigate the antigen-binding site(s) on the surface residues of antibody. We found that Trp 36, which is located at the $V_H$ domain, is an important residue to bind to Ex-A, however, two Tyr on the surface of anti-Ex-A IgG plays no crucial role to bind to antigen. On the basis of these results, we demonstrate that stable isotope-aided NMR strategy can be extended to molecular structural analyses of the complex of an Fab fragment and a protein antigen.

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Geochemistry and isotope compositions of the Han River, Korea

  • 류종식;이광식;장호완;김용제
    • Proceedings of the Korean Society of Soil and Groundwater Environment Conference
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    • 2003.09a
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    • pp.435-437
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    • 2003
  • In order to investigate processes and factors controlling the chemical and isotopic compositions of the Han River, seasonal studies were carried out. The North Han River was much lower in the concentrations of total dissolved solids (TDS), dissolved inorganic carbon (DIC) and major ions than the South Han River, but higher in $SiO_2$ concentration, $\delta$$^{34}$ $S_{so4}$ value and $^{87}$ Sr/$^{86}$ Sr ratio. This indicates that the chemical and isotopic compositions of the Han River were strongly controlled by the geology of their drainage basins: silicate rocks in the North Han River and carbonate rocks in the South Han River. The $\delta$$^{34}$ $S_{so4}$ values were relatively higher in the North Han River (5.90$\pm$1.46$\textperthousand$)) than in the South Han River (3.48$\pm$0.73$\textperthousand$). This implies that dissolved S $O_{4}$$^{2-}$ in the North Han River might be mostly derived from deposition of atmospheric sulfates, whereas in the South Han River from oxidation of sulfide minerals in the abandoned poly-metallic deposits and the coal-bearing sedimentary rocks distributed over the upstream as well as deposition of atmospheric sulfates. The $^{87}$ S $r^{86}$ Sr ratios in the North Han River were distinctly higher than those in the South Han River, reflecting water-rock interaction with different rock types.pes.

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Isotopic Assessment of Ecological Function of a Transplanted Macroalgal Habitat (Grateloupia asiatica) (안정동위원소 분석을 이용한 이식된 지네지누아리의 생태학적 기능 평가)

  • Chun, Chan-Kil;Kim, Hyung-Geun;Park, Hyun Je
    • Journal of Environmental Science International
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    • v.29 no.11
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    • pp.1089-1098
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    • 2020
  • To assess the trophic function of an artificial macroalgal habitat, we compared the stable carbon and nitrogen isotope ratios of two amphipods (Caprella sp. and Ampithoe sp.) and their potential food sources in a transplanted macroalgal habitat (Grateloupia asiatica) with those in a natural habitat. There were no significant differences in the isotopic values of both consumers and their potential food sources between the transplanted and natural habitats. Such isotopic similarities between the two sites indicate a comparable resource consumer relationship. Additionally, our results showed similar isotopic niche areas and high dietary overlap (>65%) of the two amphipods between the transplanted and natural sites, suggesting that the transplanted habitat plays ecological roles similar to the natural habitat. Overall, isotopic assessment can provide information on the trophic function of diverse transplanted macroalgal habitats and improve post-monitoring efforts in the management of artificial ecosystems.

Radiocarbon Dating (방사성탄소연대측정)

  • Leigh, Hyeon-Ju;Hwang, Jin-Ju;Paek, Hyun-Ju
    • 보존과학연구
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    • s.23
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    • pp.197-214
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    • 2002
  • It is very important to determine the age of the Cultural Properties in archeology. In about 1950, W.F. Libby and a team of scientists at the University of Chicago developed the Radiocarbon Dating technique. Radiocarbon($^14$C) Dating is probably one of the most widely used and best known absolute dating methods. Radiocarbon ages are conventionally specified to the year 1950. This year is 0 BP year. BP is the initial of Before Present. The $^14$C within an organism is continually decaying into stable carbon isotopes. When $^14$C decays, it emits a $\beta$ - particle with an energy content of 156 KeV and becomes 14N. Only the $\beta$ - particle is detected by Liquid Scintillation Counting. $^14$C has a half life of 5730 years. It has been used to date samples as old as 50,000 years. Radiocarbon determinations can be obtained on organic material : wood, charcoal, shell, etc. The results of radiocarbon dating using Benzene Synthesizer and Liquid Scintillation Counter are KCP539 $4030\pm60$BP year, KCP540 $3980\pm60$BP year, KCP575 $4870\pm50$, KCP576 $100\pm50$BP year, KCP577 $130\pm50$BP yea and KCP578 $210\pm70$BP year.

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Inferring Animal Husbandry Practice in the Baekje Period using Stable Isotope Analysis of Animal Bones from the Pungnaptoseong Fortress (풍납토성 출토 동물뼈의 탄소와 질소 안정동위원소 분석을 통해 본 백제시대의 가축사육 양상)

  • Choe, Hyeon Goo;Shin, Ji Young;Han, Ji Sun
    • Journal of Conservation Science
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    • v.32 no.2
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    • pp.179-188
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    • 2016
  • This paper presents a new information on animal husbandry practice in the Baekje period using stable isotope analysis of 17 animal bones excavated from the Pungnaptoseong Fortress. Stable carbon isotope evidence implies that wild animals such as deer and pigs had mainly $C_3$-based diet whereas domestic cattle and horses might have consumed more $C_4$ plants. In addition, we propose one potential that domestic pigs show higher nitrogen isotope values in comparison with wild boar because they were possibly fed by humans.

Understanding the Nutritional Sources of Gastropods and Anomura from the Mangrove Forest of Weno Island, Micronesia (마이크로네시아 웨노섬의 맹그로브 숲에 서식하는 고둥류 및 집게의 영양원에 대한 이해)

  • Ko, Ah-Ra;Kim, Min-Seob;Ju, Se-Jong
    • Ocean and Polar Research
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    • v.35 no.4
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    • pp.427-439
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    • 2013
  • Carbon cycling and productivity within Weno Island of Micronesia enclosed by the coral reef may be likely self-maintained and insignificantly affected by the open ocean. Therefore, it is important to understand the role of the mangrove known as providing the organic matter and habitats for many organisms in this enclosed area. In order to trace the nutritional source of fauna (mostly invertebrates) in the mangrove forest of Weno island, we analyzed the fatty acid (FA) and carbon and nitrogen stable isotopes of potential nutritional sources (mangrove leaf & pneumatophore, seagrass leaf & root, surface sediment, and particulate organic matter (POM) in water) and consumers (4 gastropods and anomura). The mangrove and seagrass contained the abundance of 18:2${\omega}$6, and 18:3${\omega}$3, whereas FAs associated with phytoplankton and bacteria were accounted for a high proportion in the surface sediment and POM. FA composition of consumers was found to be similar to those of the surface sediment, mangrove, and seagrass. These were also confirmed through the mixing model of stable isotope for contribution of nutritional sources to consumers. Overall results with the feeding types of investigated mangrove fauna indicate that investigated mangrove fauna obtained their nutrition from the various sources, i.e. the mangrove for Littorina cf. scabra, the microalgae for Strombus sp., and omnivorous Pagurus sp. and Terebralia cf. palustris. However, it is obvious that the nutrition of most species living in the mangrove ecosystem is highly dependent on the mangrove, either directly or indirectly. More detail food-web structure and function of the mangrove ecosystem would be established with the analysis of additional fauna and flora.

Foodweb of Aquatic Ecosystem within the Tamjin River through the Determination of Carbon and Nitrogen Stable Isotope Ratios (탄소 및 질소 안정동위원소비를 이용한 탐진강 수생태계 먹이망 연구)

  • Gal, Jong-Ku;Kim, Min-Seob;Lee, Yeon-Jung;Seo, Jin-Won;Shin, Kyung-Hoon
    • Korean Journal of Ecology and Environment
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    • v.45 no.2
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    • pp.242-251
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    • 2012
  • To investigate foodweb of aquatic ecosystem in the Tamjin River, carbon and nitrogen stable isotopes ratios of aquatic organisms, as well as environmental indicators based on the water, were determined in this study. Various organisms such as fishes (Coreoperca kawamebari, Zacco platypus, Cobitis lutheri, and Pungtungia herzi) and periphyton (epilithon and epiphyte), and particulate- and coarse particulate organic matters (POM and CPOM) were collected in upper (Tamjin River, Yuchi Stream, and Omcheon Stream) and lower (TJ-1~TJ-5) reaches of Jangheung Dam. The nitrate concentration and ${\delta}^{15}N$ signature of POM and organisms (invertebrates and fish) were found to be more enriched toward the downstream section of the river. It was determined that allochthonous matter occurring from a tributary alters the chemical character of water, as well as the isotopic signature of organisms contained therein. Attached algae (ephilithon) were identified as a base component of the benthic foodchain further downstream.

Ginseng authenticity testing by measuring carbon, nitrogen, and sulfur stable isotope compositions that differ based on cultivation land and organic fertilizer type

  • Chung, Ill-Min;Lee, Taek-Jun;Oh, Yong-Taek;Ghimire, Bimal Kumar;Jang, In-Bae;Kim, Seung-Hyun
    • Journal of Ginseng Research
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    • v.41 no.2
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    • pp.195-200
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    • 2017
  • Background: The natural ratios of carbon (C), nitrogen (N), and sulfur (S) stable isotopes can be varied in some specific living organisms owing to various isotopic fractionation processes in nature. Therefore, the analysis of C, N, and S stable isotope ratios in ginseng can provide a feasible method for determining ginseng authenticity depending on the cultivation land and type of fertilizer. Methods: C, N, and S stable isotope composition in 6-yr-old ginseng roots (Jagyeongjong variety) was measured by isotope ratio mass spectrometry. Results: The type of cultivation land and organic fertilizers affected the C, N, and S stable isotope ratio in ginseng (p < 0.05). The ${\delta}^{15}N_{AIR}$ and ${\delta}^{34}S_{VCDT}$ values in ginseng roots more significantly discriminated the cultivation land and type of organic fertilizers in ginseng cultivation than the ${\delta}^{13}C_{VPDB}$ value. The combination of ${\delta}^{13}C_{VPDB}$, ${\delta}^{15}N_{AIR}$, or ${\delta}^{34}S_{VCDT}$ in ginseng, except the combination ${\delta}^{13}C_{VPDB}-^{34}S_{VCDT}$, showed a better discrimination depending on soil type or fertilizer type. Conclusion: This case study provides preliminary results about the variation of C, N, and S isotope composition in ginseng according to the cultivation soil type and organic fertilizer type. Hence, our findings are potentially applicable to evaluate ginseng authenticity depending on cultivation conditions.

Exploration for the Carlin-type Gold Deposits and Its Potential to Korea (칼린형 금광상 탐사와 국내 적용성 연구)

  • Park Maeng-Eon;Sung Kyu-Youl;Baek Seung-Gyun;Kim Pil-Geun;Kang Heung-Suk;Moon Young-Hwan
    • Economic and Environmental Geology
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    • v.38 no.4 s.173
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    • pp.421-434
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    • 2005
  • Abstract Based onthe characteristics of Carlin-type gold deposit in Nevada district, a potential in Korea is evaluated to the Yemi area where is structurally controlled by folds and trust fault. The fault of high angles are combined with a more permeable rocks such as the Yemi breccia and laminated silty limestone. The pattern of enrichment factors for Tl, Sb, As, Ag, Pb, Zn, Cu, Mo and W of limestones in the southern area are geochemically similar with those reported from the Carlin-type Bold deposit. Moreover, the oxygen and carbon isotopes show a hydrothermal alteration is widely developed in this area. According to the result of geophysical interpretation, stable isotope, alteration mineralogy, geochemical study, and geological structure, this mineralized zone may be extended to the M direction, so a detailed systematic exploration is required to identify this alteration zone.

Spatial distribution and temporal variation of hydrogeochemistry in coastal lagoons and groundwater on the eastern area of korea

  • Chanyoung Jeong;Soo Min Song;Woo-Hyun Jeon;Hee Sun Moon
    • Proceedings of the Korea Water Resources Association Conference
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    • 2023.05a
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    • pp.247-247
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    • 2023
  • Coastal lagoons play a crucial role in water exchange, water quality, and biodiversity. It is essential to monitor and understand the dynamics of hydrogeochemistry in lagoon water and its groundwater to preserve and sustainably manage the groundwater-dependent ecosystems like coastal lagoons. This study investigated the spatial and temporal hydrogeochemical characteristics of coastal lagoon (Songjiho) and groundwater on the east coast of Korea. The concentrations of major ions, water isotopes, and nutrients (nitrogen and dissolved organic carbon) in lagoon water and groundwater were periodically monitored for one year. The study revealed that major ions and total dissolved solids (TDS) concentration were higher at deeper depths of aquifers and closer to the coastal area. The hydrogeochemical characteristics of coastal lagoon and groundwater chemistry were classified into two types, Ca-Mg-HCO3 and Na-Cl, based on their spatial location from inland to coastal area. Moreover, the hydrogeochemical characteristics of coastal lagoons and groundwater varied significantly depending on the season. During the wet season, the increased precipitation and evaporation lead to changes in water chemistry. As a result, the total organic carbon (TOC) of coastal lagoons increases during this season, likely due to increased runoff by rainfall whereas the variation of chemical compositions in the lagoon and groundwater were not significant because there is reduced precipitation, resulting in stable water levels and during the dry season. The study emphasizes the impact of spatial distribution and seasonal changes in precipitation, evaporation, and river discharge on the hydrogeochemical characteristics of the coastal aquifer and lagoon system. Understanding these impacts is crucial for managing and protecting coastal lagoons and groundwater resources.

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